- Gene ID
- Ot11g02170
- Locus
- Ot11g02170
- Functional Description
- Ubiquitin C-terminal hydrolase (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom11
- Last Modified On
- 09 March 2010 9h15
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Ubiquitin C-terminal hydrolase (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
cysteine-type endopeptidase activity
2.
obsolete ubiquitin thiolesterase activity
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
InterPro |
|
SSF54001 |
Cysteine proteinases |
superfamily |
|
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
InterPro |
|
PTHR10420 |
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55822.1 |
probable ubiquitin carboxyl terminal hydrolase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1077
Identities = 580/580 (100%), Positives = 580/580 (100%), Gaps = 0/580 (0%) |
NCBI |
Show Blast
|
| XP_001420324.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-170 | Bitscore: 604
Identities = 278/312 (89%), Positives = 299/312 (95%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| EAD19004.1 |
unknown [environmental sequence]
Evalue: 1e-114 | Bitscore: 412
Identities = 226/318 (71%), Positives = 254/318 (79%), Gaps = 17/318 (5%) |
GOS |
Show Blast
|
| XP_002509019.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 5e-105 | Bitscore: 385
Identities = 191/353 (54%), Positives = 246/353 (69%), Gaps = 15/353 (4%) |
NCBI |
Show Blast
|
| EEH54374.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-99 | Bitscore: 367
Identities = 189/358 (52%), Positives = 240/358 (67%), Gaps = 20/358 (5%) |
NCBI |
Show Blast
|
| XP_001772702.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-65 | Bitscore: 254
Identities = 130/339 (38%), Positives = 199/339 (58%), Gaps = 13/339 (3%) |
NCBI |
Show Blast
|
| XP_002298917.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-62 | Bitscore: 244
Identities = 128/316 (40%), Positives = 182/316 (57%), Gaps = 12/316 (3%) |
NCBI |
Show Blast
|
| XP_002317364.1 |
predicted protein [Populus trichocarpa]
Evalue: 5e-62 | Bitscore: 243
Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 16/317 (5%) |
NCBI |
Show Blast
|
| XP_002266179.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-62 | Bitscore: 243
Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 12/315 (3%) |
NCBI |
Show Blast
|
| CBI33027.1 |
unnamed protein product [Vitis vinifera]
Evalue: 9e-62 | Bitscore: 242
Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 12/315 (3%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD19004.1 |
unknown [environmental sequence]
Evalue: 1e-114 | Bitscore: 412
Identities = 226/318 (71%), Positives = 254/318 (79%), Gaps = 17/318 (5%) |
GOS |
Show Blast
|
| EAE35996.1 |
unknown [environmental sequence]
Evalue: 7e-15 | Bitscore: 82
Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 27/249 (10%) |
GOS |
Show Blast
|
| EAG82512.1 |
unknown [environmental sequence]
Evalue: 2e-13 | Bitscore: 77
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 27/236 (11%) |
GOS |
Show Blast
|
| EAA95295.1 |
unknown [environmental sequence]
Evalue: 2e-11 | Bitscore: 70
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%) |
GOS |
Show Blast
|
| EAE58290.1 |
unknown [environmental sequence]
Evalue: 4e-10 | Bitscore: 66
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 10/190 (5%) |
GOS |
Show Blast
|
| EAG09278.1 |
unknown [environmental sequence]
Evalue: 2e-09 | Bitscore: 63
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%) |
GOS |
Show Blast
|
| EAD69837.1 |
unknown [environmental sequence]
Evalue: 4e-09 | Bitscore: 62
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 46/232 (19%) |
GOS |
Show Blast
|
| EAD79984.1 |
unknown [environmental sequence]
Evalue: 9e-08 | Bitscore: 58
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 10/140 (7%) |
GOS |
Show Blast
|
| EAB95043.1 |
unknown [environmental sequence]
Evalue: 1e-07 | Bitscore: 57
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) |
GOS |
Show Blast
|
| EAE63136.1 |
unknown [environmental sequence]
Evalue: 4e-07 | Bitscore: 56
Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 29/242 (11%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55822.1 |
probable ubiquitin carboxyl terminal hydrolase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1077
Identities = 580/580 (100%), Positives = 580/580 (100%), Gaps = 0/580 (0%) |
NCBI |
Show Blast
|
| XP_001420324.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-170 | Bitscore: 604
Identities = 278/312 (89%), Positives = 299/312 (95%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| XP_002509019.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 5e-105 | Bitscore: 385
Identities = 191/353 (54%), Positives = 246/353 (69%), Gaps = 15/353 (4%) |
NCBI |
Show Blast
|
| EEH54374.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-99 | Bitscore: 367
Identities = 189/358 (52%), Positives = 240/358 (67%), Gaps = 20/358 (5%) |
NCBI |
Show Blast
|
| XP_001772702.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-65 | Bitscore: 254
Identities = 130/339 (38%), Positives = 199/339 (58%), Gaps = 13/339 (3%) |
NCBI |
Show Blast
|
| XP_002298917.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-62 | Bitscore: 244
Identities = 128/316 (40%), Positives = 182/316 (57%), Gaps = 12/316 (3%) |
NCBI |
Show Blast
|
| XP_002317364.1 |
predicted protein [Populus trichocarpa]
Evalue: 5e-62 | Bitscore: 243
Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 16/317 (5%) |
NCBI |
Show Blast
|
| XP_002266179.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-62 | Bitscore: 243
Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 12/315 (3%) |
NCBI |
Show Blast
|
| CBI33027.1 |
unnamed protein product [Vitis vinifera]
Evalue: 9e-62 | Bitscore: 242
Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 12/315 (3%) |
NCBI |
Show Blast
|
| NP_565576.1 |
UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19); cysteine-type endopeptidase/ ubiquitin thiolesterase [Arabidopsis thaliana]
Evalue: 2e-60 | Bitscore: 237
Identities = 127/339 (37%), Positives = 184/339 (54%), Gaps = 9/339 (2%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot11g00020 |
chrom11.0001 [3388..5454]
Evalue: 3e-41 | Bitscore: 164
Identities = 117/343 (34%), Positives = 179/343 (52%), Gaps = 22/343 (6%) |
Self |
Show Blast
|
| Ot04g02050 |
chrom04.0001 [301541..302729,302804..304869]
Evalue: 3e-20 | Bitscore: 95
Identities = 93/360 (25%), Positives = 159/360 (44%), Gaps = 43/360 (11%) |
Self |
Show Blast
|
| Ot13g00010 |
chrom13.0001 [652..1812]
Evalue: 1e-14 | Bitscore: 76
Identities = 84/357 (23%), Positives = 138/357 (38%), Gaps = 58/357 (16%) |
Self |
Show Blast
|
| Ot01g03000 |
chrom01.0001 [467503..467517,467759..468093,468128..468481, 468545..468857,468912..471874,471914..473171,
Evalue: 4e-10 | Bitscore: 61
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 19/154 (12%) |
Self |
Show Blast
|
| Ot02g05640 |
chrom02.0001 [669326..672838] inframe stop codon incomplete
Evalue: 3e-09 | Bitscore: 58
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 23/209 (11%) |
Self |
Show Blast
|
| Ot01g01550 |
chrom01.0001 [228044..228293,228626..229940,229978..229993, 230036..230085,230127..230316,230384..232249]
Evalue: 6e-07 | Bitscore: 51
Identities = 63/256 (24%), Positives = 96/256 (37%), Gaps = 69/256 (26%) |
Self |
Show Blast
|
| Ot17g01610 |
chrom17.0001 [232902..232914,233160..234628]
Evalue: 6e-05 | Bitscore: 44
Identities = 68/290 (23%), Positives = 110/290 (37%), Gaps = 46/290 (15%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9SJA1 |
Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2
Evalue: 1e-57 | Bitscore: 224
Identities = 127/339 (37%), Positives = 184/339 (54%), Gaps = 9/339 (2%) |
SwissP |
Show Blast
|
| Q9FPS9 |
Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2
Evalue: 2e-57 | Bitscore: 224
Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 12/315 (3%) |
SwissP |
Show Blast
|
| Q67XW5 |
Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2
Evalue: 2e-57 | Bitscore: 224
Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 9/339 (2%) |
SwissP |
Show Blast
|
| Q9H9J4 |
Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2
Evalue: 8e-50 | Bitscore: 198
Identities = 125/313 (39%), Positives = 167/313 (53%), Gaps = 15/313 (4%) |
SwissP |
Show Blast
|
| Q9FKP5 |
Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1
Evalue: 1e-49 | Bitscore: 198
Identities = 109/313 (34%), Positives = 174/313 (55%), Gaps = 10/313 (3%) |
SwissP |
Show Blast
|
| Q9SB51 |
Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1
Evalue: 2e-49 | Bitscore: 197
Identities = 106/313 (33%), Positives = 174/313 (55%), Gaps = 9/313 (2%) |
SwissP |
Show Blast
|
| B1AQJ2 |
Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1
Evalue: 3e-46 | Bitscore: 186
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 15/313 (4%) |
SwissP |
Show Blast
|
| Q9P275 |
Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3
Evalue: 6e-46 | Bitscore: 185
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 15/313 (4%) |
SwissP |
Show Blast
|
| Q9FPS2 |
Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=1 SV=1
Evalue: 5e-45 | Bitscore: 182
Identities = 120/326 (36%), Positives = 180/326 (55%), Gaps = 29/326 (8%) |
SwissP |
Show Blast
|
| Q6QN14 |
Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2
Evalue: 3e-44 | Bitscore: 180
Identities = 109/313 (34%), Positives = 161/313 (51%), Gaps = 21/313 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G24640.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 9e-59 | Bitscore: 224
Identities = 127/339 (37%), Positives = 184/339 (54%), Gaps = 9/339 (2%) |
Tair |
Show Blast
|
| AT1G17110.1 |
| Symbols: UBP15 | UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease | chr1:5845809-5849882
Evalue: 2e-58 | Bitscore: 224
Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 12/315 (3%) |
Tair |
Show Blast
|
| AT4G31670.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 2e-58 | Bitscore: 224
Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 9/339 (2%) |
Tair |
Show Blast
|
| AT5G65450.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 9e-51 | Bitscore: 198
Identities = 109/313 (34%), Positives = 174/313 (55%), Gaps = 10/313 (3%) |
Tair |
Show Blast
|
| AT4G24560.1 |
| Symbols: UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin-specific protease | chr4:12679503-12684538
Evalue: 1e-50 | Bitscore: 197
Identities = 106/313 (33%), Positives = 174/313 (55%), Gaps = 9/313 (2%) |
Tair |
Show Blast
|
| AT3G14400.1 |
| Symbols: UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease | chr3:4811960-4815217
Evalue: 5e-46 | Bitscore: 182
Identities = 120/326 (36%), Positives = 180/326 (55%), Gaps = 29/326 (8%) |
Tair |
Show Blast
|
| AT5G57990.1 |
| Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin-specific protease | chr5:23487444-23491223
Evalue: 2e-42 | Bitscore: 171
Identities = 109/318 (34%), Positives = 166/318 (52%), Gaps = 23/318 (7%) |
Tair |
Show Blast
|
| AT5G46740.1 |
| Symbols: UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin-specific protease | chr5:18982637-18985719
Evalue: 3e-30 | Bitscore: 130
Identities = 96/319 (30%), Positives = 155/319 (48%), Gaps = 22/319 (6%) |
Tair |
Show Blast
|
| AT4G39910.1 |
| Symbols: UBP3, ATUBP3 | ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease | chr4:18511852-18514133
Evalue: 2e-22 | Bitscore: 104
Identities = 92/353 (26%), Positives = 148/353 (41%), Gaps = 52/353 (14%) |
Tair |
Show Blast
|
| AT4G17895.1 |
| Symbols: UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin-specific protease | chr4:9939927-9942711
Evalue: 2e-22 | Bitscore: 103
Identities = 87/316 (27%), Positives = 145/316 (45%), Gaps = 22/316 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
