- Gene ID
- Ot11g00020
- Locus
- Ot11g00020
- Functional Description
- Ubiquitin-specific protease (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom11
- Last Modified On
- 09 March 2010 8h40
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Ubiquitin-specific protease (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
cysteine-type endopeptidase activity
2.
obsolete ubiquitin thiolesterase activity
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
InterPro |
|
SSF54001 |
Cysteine proteinases |
superfamily |
|
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
InterPro |
|
PTHR10420 |
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55607.1 |
putative ubiquitin-specific protease (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1194
Identities = 676/676 (100%), Positives = 676/676 (100%), Gaps = 0/676 (0%) |
NCBI |
Show Blast
|
| XP_001420231.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-157 | Bitscore: 559
Identities = 269/308 (87%), Positives = 290/308 (94%), Gaps = 1/308 (0%) |
NCBI |
Show Blast
|
| XP_002509376.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-113 | Bitscore: 414
Identities = 213/348 (61%), Positives = 263/348 (75%), Gaps = 9/348 (2%) |
NCBI |
Show Blast
|
| EEH54020.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-101 | Bitscore: 372
Identities = 190/307 (61%), Positives = 228/307 (74%), Gaps = 19/307 (6%) |
NCBI |
Show Blast
|
| XP_001760410.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-74 | Bitscore: 285
Identities = 152/308 (49%), Positives = 197/308 (63%), Gaps = 10/308 (3%) |
NCBI |
Show Blast
|
| AAO72607.1 |
putative ubiquitin-specific protease [Oryza sativa Japonica Group]
Evalue: 1e-70 | Bitscore: 272
Identities = 147/327 (44%), Positives = 205/327 (62%), Gaps = 15/327 (4%) |
NCBI |
Show Blast
|
| NP_001056992.1 |
Os06g0184300 [Oryza sativa (japonica cultivar-group)]
Evalue: 3e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| EEC80142.1 |
hypothetical protein OsI_21934 [Oryza sativa Indica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| EEE65221.1 |
hypothetical protein OsJ_20367 [Oryza sativa Japonica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| BAD72518.1 |
putative ubiquitin-specific protease 23 [Oryza sativa Japonica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD19004.1 |
unknown [environmental sequence]
Evalue: 3e-23 | Bitscore: 110
Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 12/206 (5%) |
GOS |
Show Blast
|
| EAE35996.1 |
unknown [environmental sequence]
Evalue: 2e-11 | Bitscore: 70
Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 37/282 (13%) |
GOS |
Show Blast
|
| EAI00348.1 |
unknown [environmental sequence]
Evalue: 9e-11 | Bitscore: 68
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 23/187 (12%) |
GOS |
Show Blast
|
| EAG82512.1 |
unknown [environmental sequence]
Evalue: 4e-10 | Bitscore: 66
Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 42/295 (14%) |
GOS |
Show Blast
|
| EAE58290.1 |
unknown [environmental sequence]
Evalue: 3e-09 | Bitscore: 63
Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 20/200 (10%) |
GOS |
Show Blast
|
| EAD79984.1 |
unknown [environmental sequence]
Evalue: 2e-07 | Bitscore: 57
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%) |
GOS |
Show Blast
|
| EAJ65160.1 |
unknown [environmental sequence]
Evalue: 3e-07 | Bitscore: 56
Identities = 66/335 (19%), Positives = 130/335 (38%), Gaps = 39/335 (11%) |
GOS |
Show Blast
|
| EAB95043.1 |
unknown [environmental sequence]
Evalue: 4e-07 | Bitscore: 56
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%) |
GOS |
Show Blast
|
| EAA95295.1 |
unknown [environmental sequence]
Evalue: 5e-07 | Bitscore: 56
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) |
GOS |
Show Blast
|
| EAD98207.1 |
unknown [environmental sequence]
Evalue: 4e-06 | Bitscore: 53
Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 48/262 (18%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55607.1 |
putative ubiquitin-specific protease (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1194
Identities = 676/676 (100%), Positives = 676/676 (100%), Gaps = 0/676 (0%) |
NCBI |
Show Blast
|
| XP_001420231.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-157 | Bitscore: 559
Identities = 269/308 (87%), Positives = 290/308 (94%), Gaps = 1/308 (0%) |
NCBI |
Show Blast
|
| XP_002509376.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-113 | Bitscore: 414
Identities = 213/348 (61%), Positives = 263/348 (75%), Gaps = 9/348 (2%) |
NCBI |
Show Blast
|
| EEH54020.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-101 | Bitscore: 372
Identities = 190/307 (61%), Positives = 228/307 (74%), Gaps = 19/307 (6%) |
NCBI |
Show Blast
|
| XP_001760410.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-74 | Bitscore: 285
Identities = 152/308 (49%), Positives = 197/308 (63%), Gaps = 10/308 (3%) |
NCBI |
Show Blast
|
| AAO72607.1 |
putative ubiquitin-specific protease [Oryza sativa Japonica Group]
Evalue: 1e-70 | Bitscore: 272
Identities = 147/327 (44%), Positives = 205/327 (62%), Gaps = 15/327 (4%) |
NCBI |
Show Blast
|
| NP_001056992.1 |
Os06g0184300 [Oryza sativa (japonica cultivar-group)]
Evalue: 3e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| EEC80142.1 |
hypothetical protein OsI_21934 [Oryza sativa Indica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| EEE65221.1 |
hypothetical protein OsJ_20367 [Oryza sativa Japonica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| BAD72518.1 |
putative ubiquitin-specific protease 23 [Oryza sativa Japonica Group]
Evalue: 4e-70 | Bitscore: 270
Identities = 149/328 (45%), Positives = 205/328 (62%), Gaps = 17/328 (5%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot11g02170 |
chrom11.0001 [369884..371626]
Evalue: 3e-36 | Bitscore: 148
Identities = 118/392 (30%), Positives = 188/392 (47%), Gaps = 29/392 (7%) |
Self |
Show Blast
|
| Ot04g02050 |
chrom04.0001 [301541..302729,302804..304869]
Evalue: 1e-25 | Bitscore: 113
Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 35/293 (11%) |
Self |
Show Blast
|
| Ot02g05640 |
chrom02.0001 [669326..672838] inframe stop codon incomplete
Evalue: 2e-18 | Bitscore: 89
Identities = 86/285 (30%), Positives = 120/285 (42%), Gaps = 41/285 (14%) |
Self |
Show Blast
|
| Ot13g00010 |
chrom13.0001 [652..1812]
Evalue: 6e-17 | Bitscore: 84
Identities = 89/348 (25%), Positives = 137/348 (39%), Gaps = 55/348 (15%) |
Self |
Show Blast
|
| Ot01g01550 |
chrom01.0001 [228044..228293,228626..229940,229978..229993, 230036..230085,230127..230316,230384..232249]
Evalue: 1e-14 | Bitscore: 76
Identities = 77/278 (27%), Positives = 106/278 (38%), Gaps = 77/278 (27%) |
Self |
Show Blast
|
| Ot01g03000 |
chrom01.0001 [467503..467517,467759..468093,468128..468481,
Evalue: 5e-11 | Bitscore: 64
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 23/172 (13%) |
Self |
Show Blast
|
| Ot17g01610 |
chrom17.0001 [232902..232914,233160..234628]
Evalue: 0.0007 | Bitscore: 41
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| B1AQJ2 |
Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1
Evalue: 7e-61 | Bitscore: 235
Identities = 136/363 (37%), Positives = 209/363 (57%), Gaps = 26/363 (7%) |
SwissP |
Show Blast
|
| Q9P275 |
Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3
Evalue: 1e-60 | Bitscore: 235
Identities = 141/409 (34%), Positives = 220/409 (53%), Gaps = 44/409 (10%) |
SwissP |
Show Blast
|
| Q9H9J4 |
Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2
Evalue: 2e-57 | Bitscore: 224
Identities = 131/333 (39%), Positives = 185/333 (55%), Gaps = 14/333 (4%) |
SwissP |
Show Blast
|
| Q9FPS4 |
Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2
Evalue: 7e-57 | Bitscore: 222
Identities = 134/308 (43%), Positives = 175/308 (56%), Gaps = 14/308 (4%) |
SwissP |
Show Blast
|
| O74442 |
Probable ubiquitin carboxyl-terminal hydrolase 16 OS=Schizosaccharomyces pombe GN=ubp16 PE=1 SV=1
Evalue: 5e-52 | Bitscore: 206
Identities = 125/349 (35%), Positives = 180/349 (51%), Gaps = 23/349 (6%) |
SwissP |
Show Blast
|
| Q9FPS2 |
Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=1 SV=1
Evalue: 1e-49 | Bitscore: 198
Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 22/318 (6%) |
SwissP |
Show Blast
|
| Q6QN14 |
Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2
Evalue: 2e-48 | Bitscore: 194
Identities = 117/312 (37%), Positives = 177/312 (56%), Gaps = 26/312 (8%) |
SwissP |
Show Blast
|
| Q0WX57 |
Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2
Evalue: 7e-47 | Bitscore: 189
Identities = 117/312 (37%), Positives = 176/312 (56%), Gaps = 26/312 (8%) |
SwissP |
Show Blast
|
| A8MUK1 |
Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2
Evalue: 9e-47 | Bitscore: 189
Identities = 117/312 (37%), Positives = 176/312 (56%), Gaps = 26/312 (8%) |
SwissP |
Show Blast
|
| P0C7I0 |
Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8 OS=Homo sapiens GN=USP17L8 PE=3 SV=1
Evalue: 1e-46 | Bitscore: 188
Identities = 139/414 (33%), Positives = 205/414 (49%), Gaps = 53/414 (12%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G57990.1 |
| Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin-specific protease | chr5:23487444-23491223
Evalue: 6e-58 | Bitscore: 222
Identities = 134/308 (43%), Positives = 175/308 (56%), Gaps = 14/308 (4%) |
Tair |
Show Blast
|
| AT3G14400.1 |
| Symbols: UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease | chr3:4811960-4815217
Evalue: 1e-50 | Bitscore: 198
Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 22/318 (6%) |
Tair |
Show Blast
|
| AT4G31670.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 1e-43 | Bitscore: 174
Identities = 117/348 (33%), Positives = 178/348 (51%), Gaps = 23/348 (6%) |
Tair |
Show Blast
|
| AT5G65450.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 2e-42 | Bitscore: 170
Identities = 110/310 (35%), Positives = 165/310 (53%), Gaps = 17/310 (5%) |
Tair |
Show Blast
|
| AT2G24640.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein |
Evalue: 3e-41 | Bitscore: 167
Identities = 109/311 (35%), Positives = 160/311 (51%), Gaps = 17/311 (5%) |
Tair |
Show Blast
|
| AT1G17110.1 |
| Symbols: UBP15 | UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease | chr1:5845809-5849882
Evalue: 1e-40 | Bitscore: 164
Identities = 104/311 (33%), Positives = 168/311 (54%), Gaps = 17/311 (5%) |
Tair |
Show Blast
|
| AT4G24560.1 |
| Symbols: UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin-specific protease | chr4:12679503-12684538
Evalue: 1e-39 | Bitscore: 161
Identities = 101/312 (32%), Positives = 163/312 (52%), Gaps = 20/312 (6%) |
Tair |
Show Blast
|
| AT5G46740.1 |
| Symbols: UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin-specific protease | chr5:18982637-18985719
Evalue: 1e-34 | Bitscore: 144
Identities = 109/331 (32%), Positives = 155/331 (46%), Gaps = 18/331 (5%) |
Tair |
Show Blast
|
| AT4G17895.1 |
| Symbols: UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin-specific protease | chr4:9939927-9942711
Evalue: 4e-31 | Bitscore: 133
Identities = 103/327 (31%), Positives = 151/327 (46%), Gaps = 22/327 (6%) |
Tair |
Show Blast
|
| AT2G22310.1 |
| Symbols: UBP4, ATUBP4 | ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease | chr2:9483813-9485905
Evalue: 6e-22 | Bitscore: 102
Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 57/309 (18%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
