- Gene ID
- Ot09g03530
- Locus
- Ot09g03530
- Functional Description
- Rad54b (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom09
- Last Modified On
- 09 March 2010 7h27
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Rad54b (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
2.
ATP binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
G3DSA:3.40.50.300 |
no description |
Gene3D |
|
IPR014001 |
DEAD-like helicase, N-terminal |
InterPro |
|
SSF52540 |
P-loop containing nucleoside triphosphate hydrolases |
superfamily |
|
IPR001650 |
DNA/RNA helicase, C-terminal |
InterPro |
|
PTHR10799 |
ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMA |
HMMPanther |
|
IPR014021 |
Helicase, superfamily 1/2, ATP-binding domain |
InterPro |
|
IPR000330 |
SNF2-related |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55512.1 |
RA54B_CHICK DNA repair and recombination protein RAD54B (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1392
Identities = 773/773 (100%), Positives = 773/773 (100%), Gaps = 0/773 (0%) |
NCBI |
Show Blast
|
| XP_001419826.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1060
Identities = 539/718 (75%), Positives = 602/718 (83%), Gaps = 20/718 (2%) |
NCBI |
Show Blast
|
| EEH57871.1 |
SNF2 super family [Micromonas pusilla CCMP1545]
Evalue: 8e-156 | Bitscore: 555
Identities = 338/733 (46%), Positives = 429/733 (58%), Gaps = 86/733 (11%) |
NCBI |
Show Blast
|
| EAK01899.1 |
unknown [environmental sequence]
Evalue: 1e-154 | Bitscore: 545
Identities = 255/335 (76%), Positives = 297/335 (88%), Gaps = 1/335 (0%) |
GOS |
Show Blast
|
| XP_002500010.1 |
SNF2 super family [Micromonas sp. RCC299]
Evalue: 3e-152 | Bitscore: 543
Identities = 309/652 (47%), Positives = 399/652 (61%), Gaps = 62/652 (9%) |
NCBI |
Show Blast
|
| EEH56690.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-115 | Bitscore: 420
Identities = 240/552 (43%), Positives = 322/552 (58%), Gaps = 49/552 (8%) |
NCBI |
Show Blast
|
| XP_001631356.1 |
predicted protein [Nematostella vectensis]
Evalue: 2e-112 | Bitscore: 411
Identities = 271/709 (38%), Positives = 367/709 (51%), Gaps = 79/709 (11%) |
NCBI |
Show Blast
|
| XP_002596054.1 |
hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
Evalue: 7e-110 | Bitscore: 402
Identities = 265/683 (38%), Positives = 366/683 (53%), Gaps = 77/683 (11%) |
NCBI |
Show Blast
|
| XP_002200063.1 |
PREDICTED: RAD54 homolog B [Taeniopygia guttata]
Evalue: 2e-109 | Bitscore: 401
Identities = 265/686 (38%), Positives = 367/686 (53%), Gaps = 86/686 (12%) |
NCBI |
Show Blast
|
| XP_001943462.1 |
PREDICTED: similar to DNA repair and recombination protein RAD54B (RAD54 homolog B) [Acyrthosiphon pisum]
Evalue: 7e-109 | Bitscore: 399
Identities = 239/618 (38%), Positives = 339/618 (54%), Gaps = 60/618 (9%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK01899.1 |
unknown [environmental sequence]
Evalue: 1e-154 | Bitscore: 545
Identities = 255/335 (76%), Positives = 297/335 (88%), Gaps = 1/335 (0%) |
GOS |
Show Blast
|
| EAG48856.1 |
unknown [environmental sequence]
Evalue: 9e-95 | Bitscore: 347
Identities = 180/246 (73%), Positives = 202/246 (82%), Gaps = 2/246 (0%) |
GOS |
Show Blast
|
| EAJ49986.1 |
unknown [environmental sequence]
Evalue: 2e-60 | Bitscore: 233
Identities = 166/421 (39%), Positives = 212/421 (50%), Gaps = 104/421 (24%) |
GOS |
Show Blast
|
| EAJ36633.1 |
unknown [environmental sequence]
Evalue: 2e-53 | Bitscore: 210
Identities = 149/454 (32%), Positives = 233/454 (51%), Gaps = 39/454 (8%) |
GOS |
Show Blast
|
| EAJ57537.1 |
unknown [environmental sequence]
Evalue: 4e-48 | Bitscore: 192
Identities = 146/484 (30%), Positives = 242/484 (50%), Gaps = 45/484 (9%) |
GOS |
Show Blast
|
| EAJ91424.1 |
unknown [environmental sequence]
Evalue: 2e-47 | Bitscore: 191
Identities = 150/484 (30%), Positives = 241/484 (49%), Gaps = 45/484 (9%) |
GOS |
Show Blast
|
| EAJ34669.1 |
unknown [environmental sequence]
Evalue: 2e-47 | Bitscore: 190
Identities = 162/502 (32%), Positives = 240/502 (47%), Gaps = 64/502 (12%) |
GOS |
Show Blast
|
| EAI32733.1 |
unknown [environmental sequence]
Evalue: 2e-38 | Bitscore: 160
Identities = 143/490 (29%), Positives = 226/490 (46%), Gaps = 72/490 (14%) |
GOS |
Show Blast
|
| EAD79672.1 |
unknown [environmental sequence]
Evalue: 2e-38 | Bitscore: 160
Identities = 105/302 (34%), Positives = 159/302 (52%), Gaps = 22/302 (7%) |
GOS |
Show Blast
|
| EAI87494.1 |
unknown [environmental sequence]
Evalue: 5e-37 | Bitscore: 155
Identities = 110/370 (29%), Positives = 180/370 (48%), Gaps = 32/370 (8%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55512.1 |
RA54B_CHICK DNA repair and recombination protein RAD54B (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1392
Identities = 773/773 (100%), Positives = 773/773 (100%), Gaps = 0/773 (0%) |
NCBI |
Show Blast
|
| XP_001419826.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1060
Identities = 539/718 (75%), Positives = 602/718 (83%), Gaps = 20/718 (2%) |
NCBI |
Show Blast
|
| EEH57871.1 |
SNF2 super family [Micromonas pusilla CCMP1545]
Evalue: 8e-156 | Bitscore: 555
Identities = 338/733 (46%), Positives = 429/733 (58%), Gaps = 86/733 (11%) |
NCBI |
Show Blast
|
| XP_002500010.1 |
SNF2 super family [Micromonas sp. RCC299]
Evalue: 3e-152 | Bitscore: 543
Identities = 309/652 (47%), Positives = 399/652 (61%), Gaps = 62/652 (9%) |
NCBI |
Show Blast
|
| EEH56690.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-115 | Bitscore: 420
Identities = 240/552 (43%), Positives = 322/552 (58%), Gaps = 49/552 (8%) |
NCBI |
Show Blast
|
| XP_001631356.1 |
predicted protein [Nematostella vectensis]
Evalue: 2e-112 | Bitscore: 411
Identities = 271/709 (38%), Positives = 367/709 (51%), Gaps = 79/709 (11%) |
NCBI |
Show Blast
|
| XP_002596054.1 |
hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
Evalue: 7e-110 | Bitscore: 402
Identities = 265/683 (38%), Positives = 366/683 (53%), Gaps = 77/683 (11%) |
NCBI |
Show Blast
|
| XP_002200063.1 |
PREDICTED: RAD54 homolog B [Taeniopygia guttata]
Evalue: 2e-109 | Bitscore: 401
Identities = 265/686 (38%), Positives = 367/686 (53%), Gaps = 86/686 (12%) |
NCBI |
Show Blast
|
| XP_001943462.1 |
PREDICTED: similar to DNA repair and recombination protein RAD54B (RAD54 homolog B) [Acyrthosiphon pisum]
Evalue: 7e-109 | Bitscore: 399
Identities = 239/618 (38%), Positives = 339/618 (54%), Gaps = 60/618 (9%) |
NCBI |
Show Blast
|
| XP_001940839.1 |
DNA repair and recombination protein RAD26 [Pyrenophora tritici-repentis Pt-1C-BFP]
Evalue: 8e-109 | Bitscore: 399
Identities = 267/699 (38%), Positives = 375/699 (53%), Gaps = 100/699 (14%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot09g01310 |
chrom09.0001 [190186..192378]
Evalue: 7e-95 | Bitscore: 343
Identities = 225/582 (38%), Positives = 313/582 (53%), Gaps = 70/582 (12%) |
Self |
Show Blast
|
| Ot08g03870 |
chrom08.0001 [639368..639573,639624..639715,639750..641899] incomplete
Evalue: 7e-94 | Bitscore: 340
Identities = 227/576 (39%), Positives = 301/576 (52%), Gaps = 69/576 (11%) |
Self |
Show Blast
|
| Ot07g04160 |
chrom07.0001 [666043..668930,668962..669012,669173..669344]
Evalue: 3e-56 | Bitscore: 215
Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 50/501 (9%) |
Self |
Show Blast
|
| Ot11g00460 |
chrom11.0001 [96730..97423,97485..99613,99665..99690,99728..99824, 99863..100968,101031..101192,101228..102362]
Evalue: 2e-52 | Bitscore: 202
Identities = 156/499 (31%), Positives = 241/499 (48%), Gaps = 34/499 (6%) |
Self |
Show Blast
|
| Ot02g06050 |
chrom02.0001 [748671..752072] incomplete
Evalue: 3e-51 | Bitscore: 198
Identities = 145/490 (29%), Positives = 239/490 (48%), Gaps = 48/490 (9%) |
Self |
Show Blast
|
| Ot01g05510 |
chrom01.0001 [902783..906955]
Evalue: 7e-48 | Bitscore: 187
Identities = 146/500 (29%), Positives = 242/500 (48%), Gaps = 57/500 (11%) |
Self |
Show Blast
|
| Ot04g02240 |
chrom04.0001 [339010..340339,340380..341605]
Evalue: 8e-45 | Bitscore: 177
Identities = 158/577 (27%), Positives = 248/577 (42%), Gaps = 124/577 (21%) |
Self |
Show Blast
|
| Ot05g01590 |
chrom05.0001 [229489..232098]
Evalue: 2e-34 | Bitscore: 142
Identities = 155/555 (27%), Positives = 231/555 (41%), Gaps = 96/555 (17%) |
Self |
Show Blast
|
| Ot17g01970 |
chrom17.0001 [283241..284409,284442..284987,285026..285437]
Evalue: 1e-33 | Bitscore: 140
Identities = 142/511 (27%), Positives = 229/511 (44%), Gaps = 87/511 (17%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9DG67 |
DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1
Evalue: 1e-106 | Bitscore: 385
Identities = 258/685 (37%), Positives = 364/685 (53%), Gaps = 78/685 (11%) |
SwissP |
Show Blast
|
| Q9Y620 |
DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1
Evalue: 1e-105 | Bitscore: 384
Identities = 247/681 (36%), Positives = 347/681 (50%), Gaps = 74/681 (10%) |
SwissP |
Show Blast
|
| P41410 |
DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2
Evalue: 1e-103 | Bitscore: 375
Identities = 223/557 (40%), Positives = 313/557 (56%), Gaps = 52/557 (9%) |
SwissP |
Show Blast
|
| Q6PFE3 |
DNA repair and recombination protein RAD54B OS=Mus musculus GN=Rad54b PE=2 SV=1
Evalue: 1e-103 | Bitscore: 375
Identities = 253/698 (36%), Positives = 351/698 (50%), Gaps = 76/698 (10%) |
SwissP |
Show Blast
|
| P38086 |
DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae GN=RDH54 PE=1 SV=2
Evalue: 3e-99 | Bitscore: 363
Identities = 223/586 (38%), Positives = 323/586 (55%), Gaps = 65/586 (11%) |
SwissP |
Show Blast
|
| P32863 |
DNA repair and recombination protein RAD54 OS=Saccharomyces cerevisiae GN=RAD54 PE=1 SV=1
Evalue: 1e-98 | Bitscore: 361
Identities = 218/593 (36%), Positives = 318/593 (53%), Gaps = 80/593 (13%) |
SwissP |
Show Blast
|
| O12944 |
DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1
Evalue: 8e-96 | Bitscore: 352
Identities = 223/554 (40%), Positives = 315/554 (56%), Gaps = 53/554 (9%) |
SwissP |
Show Blast
|
| P70270 |
DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2
Evalue: 1e-94 | Bitscore: 348
Identities = 238/612 (38%), Positives = 327/612 (53%), Gaps = 60/612 (9%) |
SwissP |
Show Blast
|
| Q92698 |
DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2
Evalue: 1e-94 | Bitscore: 348
Identities = 237/613 (38%), Positives = 329/613 (53%), Gaps = 62/613 (10%) |
SwissP |
Show Blast
|
| Q09772 |
Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe GN=rdh54 PE=1 SV=3
Evalue: 5e-92 | Bitscore: 339
Identities = 212/578 (36%), Positives = 309/578 (53%), Gaps = 54/578 (9%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G19210.1 |
| Symbols: ATRAD54, CHR25 | ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase |
Evalue: 2e-96 | Bitscore: 350
Identities = 216/563 (38%), Positives = 305/563 (54%), Gaps = 54/563 (9%) |
Tair |
Show Blast
|
| AT5G63950.1 |
| Symbols: CHR24 | CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase | chr5:25609386-25615631 REVERSE
Evalue: 4e-55 | Bitscore: 213
Identities = 162/571 (28%), Positives = 265/571 (46%), Gaps = 98/571 (17%) |
Tair |
Show Blast
|
| AT2G18760.1 |
| Symbols: CHR8 | CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase | chr2:8136236-8140584 FORWARD
Evalue: 1e-54 | Bitscore: 211
Identities = 161/554 (29%), Positives = 263/554 (47%), Gaps = 75/554 (13%) |
Tair |
Show Blast
|
| AT2G25170.1 |
| Symbols: CHR6, GYM, CHD3, SSL2, PKL | PKL (PICKLE) | chr2:10721490-10730842 FORWARD
Evalue: 2e-52 | Bitscore: 204
Identities = 158/513 (30%), Positives = 246/513 (47%), Gaps = 80/513 (15%) |
Tair |
Show Blast
|
| AT4G31900.1 |
| Symbols: | chromatin remodeling factor, putative | chr4:15431534-15438449 FORWARD
Evalue: 5e-50 | Bitscore: 196
Identities = 149/492 (30%), Positives = 236/492 (47%), Gaps = 71/492 (14%) |
Tair |
Show Blast
|
| AT3G06010.1 |
| Symbols: ATCHR12 | ATCHR12; ATP binding / DNA binding | chr3:1802441-1807290 REVERSE
Evalue: 6e-49 | Bitscore: 192
Identities = 146/489 (29%), Positives = 244/489 (49%), Gaps = 54/489 (11%) |
Tair |
Show Blast
|
| AT5G19310.1 |
| Symbols: | homeotic gene regulator, putative | chr5:6498908-6503434 FORWARD
Evalue: 1e-48 | Bitscore: 191
Identities = 149/485 (30%), Positives = 239/485 (49%), Gaps = 47/485 (9%) |
Tair |
Show Blast
|
| AT2G13370.1 |
| Symbols: CHR5 | CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase |
Evalue: 8e-48 | Bitscore: 189
Identities = 145/506 (28%), Positives = 239/506 (47%), Gaps = 74/506 (14%) |
Tair |
Show Blast
|
| AT2G28290.1 |
| Symbols: CHR3, SYD | SYD (SPLAYED) | chr2:12063848-12080027 FORWARD
Evalue: 1e-46 | Bitscore: 185
Identities = 161/511 (31%), Positives = 256/511 (50%), Gaps = 68/511 (13%) |
Tair |
Show Blast
|
| AT2G28290.2 |
| Symbols: CHR3, SYD | SYD (SPLAYED) | chr2:12063848-12080027 FORWARD
Evalue: 1e-46 | Bitscore: 185
Identities = 161/511 (31%), Positives = 256/511 (50%), Gaps = 68/511 (13%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
