- Gene ID
- Ot09g00080
- Locus
- Ot09g00080
- Functional Description
- S53761 triose-phosphate isomerase (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom09
- Last Modified On
- 09 March 2010 6h32
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- S53761 triose-phosphate isomerase (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
triose-phosphate isomerase activity
- Biological Process
-
1.
metabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR020861 |
Triosephosphate isomerase, active site |
InterPro |
|
IPR013785 |
Aldolase-type TIM barrel |
InterPro |
|
IPR000652 |
Triosephosphate isomerase |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55167.1 |
triose-phosphate isomerase (ISS) [Ostreococcus tauri]
Evalue: 2e-180 | Bitscore: 635
Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| XP_001422959.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-133 | Bitscore: 478
Identities = 229/265 (86%), Positives = 248/265 (93%), Gaps = 0/265 (0%) |
NCBI |
Show Blast
|
| XP_001419463.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-133 | Bitscore: 478
Identities = 229/265 (86%), Positives = 248/265 (93%), Gaps = 0/265 (0%) |
NCBI |
Show Blast
|
| EEH58282.1 |
triosephosphate isomerase [Micromonas pusilla CCMP1545]
Evalue: 2e-105 | Bitscore: 386
Identities = 183/258 (70%), Positives = 216/258 (83%), Gaps = 2/258 (0%) |
NCBI |
Show Blast
|
| XP_002506262.1 |
triosephosphate isomerase [Micromonas sp. RCC299]
Evalue: 9e-104 | Bitscore: 380
Identities = 181/259 (69%), Positives = 215/259 (83%), Gaps = 1/259 (0%) |
NCBI |
Show Blast
|
| BAE48229.1 |
triosephosphate isomerase chloroplast type [Chlorella pyrenoidosa]
Evalue: 3e-90 | Bitscore: 335
Identities = 168/270 (62%), Positives = 198/270 (73%), Gaps = 8/270 (2%) |
NCBI |
Show Blast
|
| XP_002529248.1 |
triosephosphate isomerase, putative [Ricinus communis]
Evalue: 7e-90 | Bitscore: 334
Identities = 166/274 (60%), Positives = 200/274 (72%), Gaps = 6/274 (2%) |
NCBI |
Show Blast
|
| NP_001063777.1 |
Os09g0535000 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-89 | Bitscore: 333
Identities = 165/265 (62%), Positives = 201/265 (75%), Gaps = 5/265 (1%) |
NCBI |
Show Blast
|
| EAZ09878.1 |
hypothetical protein OsI_32171 [Oryza sativa Indica Group]
Evalue: 2e-89 | Bitscore: 333
Identities = 165/265 (62%), Positives = 201/265 (75%), Gaps = 5/265 (1%) |
NCBI |
Show Blast
|
| P46225 |
Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1
Evalue: 1e-88 | Bitscore: 326
Identities = 165/262 (62%), Positives = 204/262 (77%), Gaps = 4/262 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAI28400.1 |
unknown [environmental sequence]
Evalue: 8e-52 | Bitscore: 203
Identities = 109/248 (43%), Positives = 147/248 (59%) |
GOS |
Show Blast
|
| EAI51866.1 |
unknown [environmental sequence]
Evalue: 2e-51 | Bitscore: 202
Identities = 109/248 (43%), Positives = 146/248 (58%) |
GOS |
Show Blast
|
| EAK24513.1 |
unknown [environmental sequence]
Evalue: 5e-50 | Bitscore: 197
Identities = 110/255 (43%), Positives = 153/255 (60%), Gaps = 8/255 (3%) |
GOS |
Show Blast
|
| EAK67460.1 |
unknown [environmental sequence]
Evalue: 5e-50 | Bitscore: 197
Identities = 110/255 (43%), Positives = 153/255 (60%), Gaps = 8/255 (3%) |
GOS |
Show Blast
|
| EAD07605.1 |
unknown [environmental sequence]
Evalue: 6e-50 | Bitscore: 197
Identities = 106/248 (42%), Positives = 145/248 (58%) |
GOS |
Show Blast
|
| EAD82688.1 |
unknown [environmental sequence]
Evalue: 7e-49 | Bitscore: 193
Identities = 111/249 (44%), Positives = 150/249 (60%), Gaps = 11/249 (4%) |
GOS |
Show Blast
|
| EAJ35931.1 |
unknown [environmental sequence]
Evalue: 9e-49 | Bitscore: 193
Identities = 115/247 (46%), Positives = 158/247 (63%), Gaps = 6/247 (2%) |
GOS |
Show Blast
|
| EAJ86749.1 |
unknown [environmental sequence]
Evalue: 8e-48 | Bitscore: 190
Identities = 102/241 (42%), Positives = 140/241 (58%) |
GOS |
Show Blast
|
| EAE27142.1 |
unknown [environmental sequence]
Evalue: 2e-47 | Bitscore: 189
Identities = 101/241 (41%), Positives = 139/241 (57%) |
GOS |
Show Blast
|
| EAK10461.1 |
unknown [environmental sequence]
Evalue: 4e-45 | Bitscore: 181
Identities = 102/250 (40%), Positives = 142/250 (56%), Gaps = 5/250 (2%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55167.1 |
triose-phosphate isomerase (ISS) [Ostreococcus tauri]
Evalue: 2e-180 | Bitscore: 635
Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| XP_001422959.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-133 | Bitscore: 478
Identities = 229/265 (86%), Positives = 248/265 (93%), Gaps = 0/265 (0%) |
NCBI |
Show Blast
|
| XP_001419463.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-133 | Bitscore: 478
Identities = 229/265 (86%), Positives = 248/265 (93%), Gaps = 0/265 (0%) |
NCBI |
Show Blast
|
| EEH58282.1 |
triosephosphate isomerase [Micromonas pusilla CCMP1545]
Evalue: 2e-105 | Bitscore: 386
Identities = 183/258 (70%), Positives = 216/258 (83%), Gaps = 2/258 (0%) |
NCBI |
Show Blast
|
| XP_002506262.1 |
triosephosphate isomerase [Micromonas sp. RCC299]
Evalue: 9e-104 | Bitscore: 380
Identities = 181/259 (69%), Positives = 215/259 (83%), Gaps = 1/259 (0%) |
NCBI |
Show Blast
|
| P46225 |
RecName: Full=Triosephosphate isomerase, chloroplastic; Short=TIM; Short=Triose-phosphate isomerase; Flags: Precursor
Evalue: 4e-91 | Bitscore: 338
Identities = 165/262 (62%), Positives = 204/262 (77%), Gaps = 4/262 (1%) |
NCBI |
Show Blast
|
| BAE48229.1 |
triosephosphate isomerase chloroplast type [Chlorella pyrenoidosa]
Evalue: 3e-90 | Bitscore: 335
Identities = 168/270 (62%), Positives = 198/270 (73%), Gaps = 8/270 (2%) |
NCBI |
Show Blast
|
| XP_002529248.1 |
triosephosphate isomerase, putative [Ricinus communis]
Evalue: 7e-90 | Bitscore: 334
Identities = 166/274 (60%), Positives = 200/274 (72%), Gaps = 6/274 (2%) |
NCBI |
Show Blast
|
| NP_001063777.1 |
Os09g0535000 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-89 | Bitscore: 333
Identities = 165/265 (62%), Positives = 201/265 (75%), Gaps = 5/265 (1%) |
NCBI |
Show Blast
|
| EAZ09878.1 |
hypothetical protein OsI_32171 [Oryza sativa Indica Group]
Evalue: 2e-89 | Bitscore: 333
Identities = 165/265 (62%), Positives = 201/265 (75%), Gaps = 5/265 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot13g00640 |
chrom13.0001 [104635..106260,106304..106324,106363..106773]
Evalue: 1e-47 | Bitscore: 185
Identities = 114/250 (45%), Positives = 144/250 (57%), Gaps = 7/250 (2%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P46225 |
Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1
Evalue: 1e-88 | Bitscore: 326
Identities = 165/262 (62%), Positives = 204/262 (77%), Gaps = 4/262 (1%) |
SwissP |
Show Blast
|
| P48496 |
Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1
Evalue: 5e-87 | Bitscore: 321
Identities = 161/261 (61%), Positives = 193/261 (73%), Gaps = 3/261 (1%) |
SwissP |
Show Blast
|
| P48494 |
Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3
Evalue: 1e-85 | Bitscore: 317
Identities = 165/249 (66%), Positives = 198/249 (79%), Gaps = 6/249 (2%) |
SwissP |
Show Blast
|
| P48495 |
Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
Evalue: 2e-84 | Bitscore: 312
Identities = 160/250 (64%), Positives = 198/250 (79%), Gaps = 6/250 (2%) |
SwissP |
Show Blast
|
| P12863 |
Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3
Evalue: 3e-84 | Bitscore: 311
Identities = 160/249 (64%), Positives = 195/249 (78%), Gaps = 6/249 (2%) |
SwissP |
Show Blast
|
| Q9SKP6 |
Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1
Evalue: 2e-83 | Bitscore: 309
Identities = 156/259 (60%), Positives = 191/259 (73%), Gaps = 3/259 (1%) |
SwissP |
Show Blast
|
| Q9M4S8 |
Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1
Evalue: 2e-82 | Bitscore: 306
Identities = 153/261 (58%), Positives = 192/261 (73%), Gaps = 3/261 (1%) |
SwissP |
Show Blast
|
| P46226 |
Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3
Evalue: 1e-81 | Bitscore: 303
Identities = 157/249 (63%), Positives = 193/249 (77%), Gaps = 6/249 (2%) |
SwissP |
Show Blast
|
| P48491 |
Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2
Evalue: 5e-81 | Bitscore: 301
Identities = 156/253 (61%), Positives = 196/253 (77%), Gaps = 6/253 (2%) |
SwissP |
Show Blast
|
| P48497 |
Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1
Evalue: 5e-80 | Bitscore: 297
Identities = 156/253 (61%), Positives = 183/253 (72%), Gaps = 4/253 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G21170.1 |
| Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase | chr2:9078128-9080187 REVERSE
Evalue: 1e-84 | Bitscore: 309
Identities = 156/259 (60%), Positives = 191/259 (73%), Gaps = 3/259 (1%) |
Tair |
Show Blast
|
| AT3G55440.1 |
| Symbols: TPI, ATCTIMC | ATCTIMC (CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE); triose-phosphate isomerase |
Evalue: 4e-82 | Bitscore: 301
Identities = 156/253 (61%), Positives = 196/253 (77%), Gaps = 6/253 (2%) |
Tair |
Show Blast
|
| AT2G21170.2 |
| Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE) | chr2:9078128-9080187 REVERSE
Evalue: 2e-76 | Bitscore: 282
Identities = 148/259 (57%), Positives = 183/259 (70%), Gaps = 12/259 (4%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
