- Gene ID
- Ot08g01910
- Locus
- Ot08g01910
- Functional Description
- histone acetyltransferase GCN5 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom08
- Last Modified On
- 09 March 2010 5h54
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- histone acetyltransferase GCN5 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
| Domain ID | Description | Database |
|---|
|
PTHR22880 |
FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
HMMPanther |
|
IPR000182 |
GCN5-related N-acetyltransferase |
InterPro |
|
IPR001487 |
Bromodomain |
InterPro |
|
IPR016181 |
Acyl-CoA N-acyltransferase |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54929.1 |
Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) (ISS)
Evalue: 0.0 | Bitscore: 878
Identities = 417/417 (100%), Positives = 417/417 (100%), Gaps = 0/417 (0%) |
NCBI |
Show Blast
|
| XP_001419344.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 698
Identities = 330/404 (81%), Positives = 351/404 (86%), Gaps = 12/404 (2%) |
NCBI |
Show Blast
|
| EEH57341.1 |
histone acetyltransferase [Micromonas pusilla CCMP1545]
Evalue: 2e-148 | Bitscore: 530
Identities = 256/367 (69%), Positives = 291/367 (79%), Gaps = 13/367 (3%) |
NCBI |
Show Blast
|
| XP_002501400.1 |
histone acetyltransferase [Micromonas sp. RCC299]
Evalue: 9e-144 | Bitscore: 514
Identities = 250/367 (68%), Positives = 284/367 (77%), Gaps = 13/367 (3%) |
NCBI |
Show Blast
|
| XP_001766378.1 |
histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 [Physcomitrella patens subsp. patens]
Evalue: 2e-113 | Bitscore: 413
Identities = 207/402 (51%), Positives = 275/402 (68%), Gaps = 22/402 (5%) |
NCBI |
Show Blast
|
| NP_567002.1 |
GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase [Arabidopsis thaliana]
Evalue: 3e-110 | Bitscore: 402
Identities = 184/365 (50%), Positives = 261/365 (71%), Gaps = 16/365 (4%) |
NCBI |
Show Blast
|
| ABR17676.1 |
unknown [Picea sitchensis]
Evalue: 7e-109 | Bitscore: 398
Identities = 187/378 (49%), Positives = 264/378 (69%), Gaps = 16/378 (4%) |
NCBI |
Show Blast
|
| XP_002275146.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-108 | Bitscore: 396
Identities = 182/366 (49%), Positives = 251/366 (68%), Gaps = 16/366 (4%) |
NCBI |
Show Blast
|
| ADB92636.1 |
putative histone acetyltransferase GCN5 [Hordeum vulgare]
Evalue: 2e-107 | Bitscore: 393
Identities = 195/414 (47%), Positives = 266/414 (64%), Gaps = 26/414 (6%) |
NCBI |
Show Blast
|
| AT3G54610.1 |
| Symbols: HAG1, HAT1, ATGCN5, HAC3, HAG01, BGT, GCN5 | GCN5 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1); H3
Evalue: 1e-109 | Bitscore: 392
Identities = 184/365 (50%), Positives = 261/365 (71%), Gaps = 16/365 (4%) |
Tair |
Show Blast
|
| No hits found against database GOS with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54929.1 |
Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) (ISS)
Evalue: 0.0 | Bitscore: 878
Identities = 417/417 (100%), Positives = 417/417 (100%), Gaps = 0/417 (0%) |
NCBI |
Show Blast
|
| XP_001419344.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 698
Identities = 330/404 (81%), Positives = 351/404 (86%), Gaps = 12/404 (2%) |
NCBI |
Show Blast
|
| EEH57341.1 |
histone acetyltransferase [Micromonas pusilla CCMP1545]
Evalue: 2e-148 | Bitscore: 530
Identities = 256/367 (69%), Positives = 291/367 (79%), Gaps = 13/367 (3%) |
NCBI |
Show Blast
|
| XP_002501400.1 |
histone acetyltransferase [Micromonas sp. RCC299]
Evalue: 9e-144 | Bitscore: 514
Identities = 250/367 (68%), Positives = 284/367 (77%), Gaps = 13/367 (3%) |
NCBI |
Show Blast
|
| XP_001766378.1 |
histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 [Physcomitrella patens subsp. patens]
Evalue: 2e-113 | Bitscore: 413
Identities = 207/402 (51%), Positives = 275/402 (68%), Gaps = 22/402 (5%) |
NCBI |
Show Blast
|
| NP_567002.1 |
GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase [Arabidopsis thaliana]
Evalue: 3e-110 | Bitscore: 402
Identities = 184/365 (50%), Positives = 261/365 (71%), Gaps = 16/365 (4%) |
NCBI |
Show Blast
|
| ABR17676.1 |
unknown [Picea sitchensis]
Evalue: 7e-109 | Bitscore: 398
Identities = 187/378 (49%), Positives = 264/378 (69%), Gaps = 16/378 (4%) |
NCBI |
Show Blast
|
| XP_002275146.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-108 | Bitscore: 396
Identities = 182/366 (49%), Positives = 251/366 (68%), Gaps = 16/366 (4%) |
NCBI |
Show Blast
|
| ADB92636.1 |
putative histone acetyltransferase GCN5 [Hordeum vulgare]
Evalue: 2e-107 | Bitscore: 393
Identities = 195/414 (47%), Positives = 266/414 (64%), Gaps = 26/414 (6%) |
NCBI |
Show Blast
|
| CAB77581.1 |
histon acetyltransferase HAT1 [Arabidopsis thaliana]
Evalue: 6e-107 | Bitscore: 391
Identities = 184/383 (48%), Positives = 261/383 (68%), Gaps = 34/383 (8%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot05g04730 |
chrom05.0001 [739762..739893,739925..740241,740274..740503,
Evalue: 6e-05 | Bitscore: 43
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 13/81 (16%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9AR19 |
Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1
Evalue: 1e-108 | Bitscore: 392
Identities = 184/365 (50%), Positives = 261/365 (71%), Gaps = 16/365 (4%) |
SwissP |
Show Blast
|
| Q338B9 |
Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica GN=GCN5 PE=2 SV=1
Evalue: 1e-104 | Bitscore: 379
Identities = 184/363 (50%), Positives = 255/363 (70%), Gaps = 17/363 (4%) |
SwissP |
Show Blast
|
| Q03330 |
Histone acetyltransferase GCN5 OS=Saccharomyces cerevisiae GN=GCN5 PE=1 SV=1
Evalue: 2e-76 | Bitscore: 286
Identities = 176/434 (40%), Positives = 246/434 (56%), Gaps = 49/434 (11%) |
SwissP |
Show Blast
|
| Q6CXW4 |
Histone acetyltransferase GCN5 OS=Kluyveromyces lactis GN=GCN5 PE=3 SV=1
Evalue: 7e-76 | Bitscore: 284
Identities = 174/432 (40%), Positives = 238/432 (55%), Gaps = 53/432 (12%) |
SwissP |
Show Blast
|
| Q8WZM0 |
Histone acetyltransferase GCN5 OS=Yarrowia lipolytica GN=GCN5 PE=3 SV=1
Evalue: 1e-75 | Bitscore: 283
Identities = 153/359 (42%), Positives = 216/359 (60%), Gaps = 30/359 (8%) |
SwissP |
Show Blast
|
| Q756G9 |
Histone acetyltransferase GCN5 OS=Ashbya gossypii GN=GCN5 PE=3 SV=1
Evalue: 1e-74 | Bitscore: 280
Identities = 155/360 (43%), Positives = 217/360 (60%), Gaps = 30/360 (8%) |
SwissP |
Show Blast
|
| Q6FTW5 |
Histone acetyltransferase GCN5 OS=Candida glabrata GN=GCN5 PE=3 SV=1
Evalue: 9e-72 | Bitscore: 271
Identities = 156/360 (43%), Positives = 215/360 (59%), Gaps = 30/360 (8%) |
SwissP |
Show Blast
|
| Q9JHD1 |
Histone acetyltransferase KAT2B OS=Mus musculus GN=Kat2b PE=1 SV=2
Evalue: 9e-71 | Bitscore: 267
Identities = 159/417 (38%), Positives = 237/417 (56%), Gaps = 44/417 (10%) |
SwissP |
Show Blast
|
| Q92831 |
Histone acetyltransferase KAT2B OS=Homo sapiens GN=KAT2B PE=1 SV=3
Evalue: 3e-70 | Bitscore: 266
Identities = 164/420 (39%), Positives = 238/420 (56%), Gaps = 40/420 (9%) |
SwissP |
Show Blast
|
| Q6BGW1 |
Histone acetyltransferase GCN5 OS=Debaryomyces hansenii GN=GCN5 PE=3 SV=2
Evalue: 5e-70 | Bitscore: 265
Identities = 149/358 (41%), Positives = 208/358 (58%), Gaps = 25/358 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G54610.1 |
| Symbols: HAG1, HAT1, ATGCN5, HAC3, HAG01, BGT, GCN5 | GCN5 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1); H3
Evalue: 1e-109 | Bitscore: 392
Identities = 184/365 (50%), Positives = 261/365 (71%), Gaps = 16/365 (4%) |
Tair |
Show Blast
|
| AT5G63330.2 |
| Symbols: | DNA-binding bromodomain-containing protein | chr5:25394406-25396009 REVERSE
Evalue: 9e-07 | Bitscore: 51
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 18/107 (16%) |
Tair |
Show Blast
|
| AT5G63330.1 |
| Symbols: | DNA-binding bromodomain-containing protein | chr5:25394406-25396009 REVERSE
Evalue: 9e-07 | Bitscore: 51
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 18/107 (16%) |
Tair |
Show Blast
|
| AT1G76380.2 |
| Symbols: | DNA-binding bromodomain-containing protein | chr1:28656310-28659430 REVERSE
Evalue: 0.0002 | Bitscore: 44
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 17/96 (17%) |
Tair |
Show Blast
|
| AT1G76380.3 |
| Symbols: | DNA-binding bromodomain-containing protein | chr1:28656310-28659430 REVERSE
Evalue: 0.0002 | Bitscore: 44
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 17/96 (17%) |
Tair |
Show Blast
|
| AT1G76380.1 |
| Symbols: | DNA-binding bromodomain-containing protein | chr1:28656310-28659430 REVERSE
Evalue: 0.0002 | Bitscore: 43
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 17/96 (17%) |
Tair |
Show Blast
|
| AT3G01770.1 |
| Symbols: ATBET10 | ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA binding |
Evalue: 0.0004 | Bitscore: 42
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 21/92 (22%) |
Tair |
Show Blast
|
| AT5G14270.1 |
| Symbols: ATBET9 | ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9); DNA binding |
Evalue: 0.0005 | Bitscore: 42
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 21/110 (19%) |
Tair |
Show Blast
|
| AT1G20670.1 |
| Symbols: | DNA-binding bromodomain-containing protein | chr1:7164527-7167923 REVERSE
Evalue: 0.0005 | Bitscore: 42
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 17/105 (16%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
