- Gene ID
- Ot08g01890
- Locus
- Ot08g01890
- Functional Description
- S59587 histone H2B (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom08
- Last Modified On
- 09 March 2010 5h54
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- S59587 histone H2B (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
- Biological Process
-
n/a
Protein Domains
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
CAL54927.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 7e-66 | Bitscore: 253 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%) |
NCBI |
Show Blast
|
CAL57198.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 3e-56 | Bitscore: 220 Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
XP_001419128.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-55 | Bitscore: 216 Identities = 108/111 (97%), Positives = 109/111 (98%), Gaps = 0/111 (0%) |
NCBI |
Show Blast
|
XP_002503973.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 7e-49 | Bitscore: 196 Identities = 99/109 (90%), Positives = 102/109 (93%), Gaps = 0/109 (0%) |
NCBI |
Show Blast
|
XP_002501781.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 6e-46 | Bitscore: 186 Identities = 98/113 (86%), Positives = 102/113 (90%), Gaps = 0/113 (0%) |
NCBI |
Show Blast
|
EEH53747.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-46 | Bitscore: 186 Identities = 104/114 (91%), Positives = 107/114 (93%), Gaps = 0/114 (0%) |
NCBI |
Show Blast
|
XP_001693071.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179 Identities = 85/92 (92%), Positives = 90/92 (97%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
Ot12g01070 |
chrom12.0001 [146939..147025,147058..147387]
Evalue: 2e-46 | Bitscore: 178 Identities = 109/110 (99%), Positives = 110/110 (100%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
EAD57116.1 |
unknown [environmental sequence]
Evalue: 6e-36 | Bitscore: 149 Identities = 100/113 (88%), Positives = 103/113 (91%) |
GOS |
Show Blast
|
EAC87389.1 |
unknown [environmental sequence]
Evalue: 6e-32 | Bitscore: 135 Identities = 75/90 (83%), Positives = 86/90 (95%) |
GOS |
Show Blast
|
EAH72326.1 |
unknown [environmental sequence]
Evalue: 1e-17 | Bitscore: 88 Identities = 47/78 (60%), Positives = 64/78 (82%) |
GOS |
Show Blast
|
EAE33077.1 |
unknown [environmental sequence]
Evalue: 2e-09 | Bitscore: 61 Identities = 39/49 (79%), Positives = 39/49 (79%) |
GOS |
Show Blast
|
EAF95464.1 |
unknown [environmental sequence]
Evalue: 2e-06 | Bitscore: 51 Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%) |
GOS |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
CAL54927.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 7e-66 | Bitscore: 253 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%) |
NCBI |
Show Blast
|
CAL57198.1 |
histone H2B (ISS) [Ostreococcus tauri]
Evalue: 3e-56 | Bitscore: 220 Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%) |
NCBI |
Show Blast
|
XP_001419128.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-55 | Bitscore: 216 Identities = 108/111 (97%), Positives = 109/111 (98%), Gaps = 0/111 (0%) |
NCBI |
Show Blast
|
XP_002503973.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 7e-49 | Bitscore: 196 Identities = 99/109 (90%), Positives = 102/109 (93%), Gaps = 0/109 (0%) |
NCBI |
Show Blast
|
XP_002501781.1 |
histone H2B [Micromonas sp. RCC299]
Evalue: 6e-46 | Bitscore: 186 Identities = 98/113 (86%), Positives = 102/113 (90%), Gaps = 0/113 (0%) |
NCBI |
Show Blast
|
EEH53747.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-46 | Bitscore: 186 Identities = 104/114 (91%), Positives = 107/114 (93%), Gaps = 0/114 (0%) |
NCBI |
Show Blast
|
P16867 |
RecName: Full=Histone H2B.3; AltName: Full=H2B-III
Evalue: 7e-44 | Bitscore: 179 Identities = 85/90 (94%), Positives = 90/90 (100%), Gaps = 0/90 (0%) |
NCBI |
Show Blast
|
XP_001693071.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179 Identities = 85/92 (92%), Positives = 90/92 (97%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
P54345 |
RecName: Full=Histone H2B.2; AltName: Full=H2B-II
Evalue: 1e-43 | Bitscore: 179 Identities = 85/92 (92%), Positives = 90/92 (97%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
XP_001693722.1 |
histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 178 Identities = 85/92 (92%), Positives = 90/92 (97%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
No hits found against database O.RCC809 with an e-value better than 1e-3. |
No hits found against database O.luci with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Ot12g01070 |
chrom12.0001 [146939..147025,147058..147387]
Evalue: 2e-46 | Bitscore: 178 Identities = 109/110 (99%), Positives = 110/110 (100%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
Q943L2 |
Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1
Evalue: 7e-35 | Bitscore: 145 Identities = 81/90 (90%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
A2WWU2 |
Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1
Evalue: 7e-35 | Bitscore: 145 Identities = 81/90 (90%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
P16867 |
Histone H2B.3 OS=Volvox carteri PE=3 SV=3
Evalue: 4e-34 | Bitscore: 143 Identities = 85/90 (94%), Positives = 90/90 (100%) |
SwissP |
Show Blast
|
P54347 |
Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 4e-34 | Bitscore: 142 Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
P54346 |
Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 5e-34 | Bitscore: 142 Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
P16868 |
Histone H2B.4 OS=Volvox carteri PE=3 SV=3
Evalue: 6e-34 | Bitscore: 142 Identities = 85/91 (93%), Positives = 91/91 (100%) |
SwissP |
Show Blast
|
Q43217 |
Histone H2B.3 OS=Triticum aestivum PE=1 SV=3
Evalue: 1e-33 | Bitscore: 141 Identities = 82/90 (91%), Positives = 88/90 (97%) |
SwissP |
Show Blast
|
P50565 |
Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3
Evalue: 1e-33 | Bitscore: 141 Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
P27807 |
Histone H2B.1 OS=Triticum aestivum PE=1 SV=3
Evalue: 2e-33 | Bitscore: 140 Identities = 88/112 (78%), Positives = 96/112 (85%) |
SwissP |
Show Blast
|
P54345 |
Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3
Evalue: 2e-33 | Bitscore: 140 Identities = 85/93 (91%), Positives = 90/93 (96%) |
SwissP |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
AT3G46030.1 |
| Symbols: HTB11 | HTB11; DNA binding | chr3:16924599-16925036 REVERSE
Evalue: 2e-34 | Bitscore: 140 Identities = 89/125 (71%), Positives = 101/125 (80%), Gaps = 13/125 (10%) |
Tair |
Show Blast
|
AT5G59910.1 |
| Symbols: HTB4 | HTB4; DNA binding | chr5:24144432-24144884 FORWARD
Evalue: 3e-34 | Bitscore: 139 Identities = 90/125 (72%), Positives = 100/125 (80%), Gaps = 13/125 (10%) |
Tair |
Show Blast
|
AT1G07790.1 |
| Symbols: HTB1 | HTB1; DNA binding | chr1:2413046-2413492 FORWARD
Evalue: 8e-34 | Bitscore: 138 Identities = 91/125 (72%), Positives = 99/125 (79%), Gaps = 11/125 (8%) |
Tair |
Show Blast
|
AT5G22880.1 |
| Symbols: H2B, HTB2 | H2B/HTB2 (HISTONE H2B); DNA binding | chr5:7652133-7652570 REVERSE
Evalue: 8e-34 | Bitscore: 138 Identities = 87/108 (80%), Positives = 96/108 (88%), Gaps = 3/108 (2%) |
Tair |
Show Blast
|
AT2G28720.1 |
| Symbols: | histone H2B, putative | chr2:12334120-12334575 FORWARD
Evalue: 1e-33 | Bitscore: 137 Identities = 92/128 (71%), Positives = 103/128 (80%), Gaps = 14/128 (10%) |
Tair |
Show Blast
|
AT2G37470.1 |
| Symbols: | histone H2B, putative | chr2:15743910-15744326 FORWARD
Evalue: 1e-33 | Bitscore: 137 Identities = 89/125 (71%), Positives = 98/125 (78%), Gaps = 12/125 (9%) |
Tair |
Show Blast
|
AT3G45980.1 |
| Symbols: HTB9 | HTB9; DNA binding | chr3:16908477-16908929 REVERSE
Evalue: 5e-33 | Bitscore: 135 Identities = 89/125 (71%), Positives = 101/125 (80%), Gaps = 13/125 (10%) |
Tair |
Show Blast
|
AT3G53650.1 |
| Symbols: | histone H2B, putative | chr3:19900336-19900752 FORWARD
Evalue: 6e-33 | Bitscore: 135 Identities = 88/130 (67%), Positives = 99/130 (76%), Gaps = 16/130 (12%) |
Tair |
Show Blast
|
AT3G09480.1 |
| Symbols: | histone H2B, putative | chr3:2914896-2915276 REVERSE
Evalue: 1e-31 | Bitscore: 131 Identities = 85/122 (69%), Positives = 98/122 (80%), Gaps = 10/122 (8%) |
Tair |
Show Blast
|
AT5G02570.1 |
| Symbols: | histone H2B, putative | chr5:576740-577138 REVERSE
Evalue: 3e-31 | Bitscore: 130 Identities = 91/128 (71%), Positives = 102/128 (79%), Gaps = 16/128 (12%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|