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Ostreococcus tauri


Gene ID
Ot08g01890
Locus
Ot08g01890
Functional Description
S59587 histone H2B (ISS)
Gene Type
protein-coding gene
Contig
chrom08
Last Modified On
09 March 2010 5h54
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
S59587 histone H2B (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
DNA binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR000558 Histone H2B InterPro
IPR009072 Histone-fold InterPro
IPR007125 Histone core InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL54927.1 histone H2B (ISS) [Ostreococcus tauri]
Evalue: 7e-66 | Bitscore: 253
Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
NCBI
Show Blast
CAL57198.1 histone H2B (ISS) [Ostreococcus tauri]
Evalue: 3e-56 | Bitscore: 220
Identities = 109/110 (99%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
NCBI
Show Blast
XP_001419128.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-55 | Bitscore: 216
Identities = 108/111 (97%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
NCBI
Show Blast
XP_002503973.1 histone H2B [Micromonas sp. RCC299]
Evalue: 7e-49 | Bitscore: 196
Identities = 99/109 (90%), Positives = 102/109 (93%), Gaps = 0/109 (0%)
NCBI
Show Blast
XP_002501781.1 histone H2B [Micromonas sp. RCC299]
Evalue: 6e-46 | Bitscore: 186
Identities = 98/113 (86%), Positives = 102/113 (90%), Gaps = 0/113 (0%)
NCBI
Show Blast
EEH53747.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-46 | Bitscore: 186
Identities = 104/114 (91%), Positives = 107/114 (93%), Gaps = 0/114 (0%)
NCBI
Show Blast
XP_001693071.1 histone H2B [Chlamydomonas reinhardtii]
Evalue: 1e-43 | Bitscore: 179
Identities = 85/92 (92%), Positives = 90/92 (97%), Gaps = 0/92 (0%)
NCBI
Show Blast
Ot12g01070 chrom12.0001 [146939..147025,147058..147387]
Evalue: 2e-46 | Bitscore: 178
Identities = 109/110 (99%), Positives = 110/110 (100%)
Self
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


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Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
Ot08g01890
Redo Blast
CDS Length
378 nucleotides
CDS Sequence

Protein 

Locus ID
Ot08g01890
Redo Blast
Protein Length
126 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a