- Gene ID
- Ot07g03490
- Locus
- Ot07g03490
- Functional Description
- putative beta-galactosidase (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 5h06
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative beta-galactosidase (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
hydrolase activity, hydrolyzing O-glycosyl compounds
- Biological Process
-
1.
carbohydrate metabolic process
2.
peptidyl-lysine modification to peptidyl-hypusine
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR004199 |
Glycoside hydrolase, family 42, domain 5 |
InterPro |
|
IPR017853 |
Glycoside hydrolase, catalytic core |
InterPro |
|
IPR013812 |
Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain |
InterPro |
|
IPR013781 |
Glycoside hydrolase, subgroup, catalytic core |
InterPro |
|
IPR008979 |
Galactose-binding domain-like |
InterPro |
|
IPR006102 |
Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich |
InterPro |
|
IPR008775 |
Phytanoyl-CoA dioxygenase |
InterPro |
|
SSF52467 |
DHS-like NAD/FAD-binding domain |
superfamily |
|
IPR006103 |
Glycoside hydrolase family 2, TIM barrel |
InterPro |
|
IPR006101 |
Glycoside hydrolase, family 2 |
InterPro |
|
IPR011013 |
Glycoside hydrolase-type carbohydrate-binding |
InterPro |
|
PTHR10066 |
GLYCOSIDE HYDROLASE |
HMMPanther |
|
IPR014718 |
Glycoside hydrolase-type carbohydrate-binding, subgroup |
InterPro |
|
IPR006104 |
Glycoside hydrolase family 2, carbohydrate-binding |
InterPro |
|
G3DSA:2.60.120.260 |
no description |
Gene3D |
|
IPR002773 |
Deoxyhypusine synthase |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54622.1 |
putative beta-galactosidase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3519
Identities = 1692/1692 (100%), Positives = 1692/1692 (100%), Gaps = 0/1692 (0%) |
NCBI |
Show Blast
|
| XP_001416385.1 |
Beta-galactosidase, putative [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1427
Identities = 678/1143 (59%), Positives = 829/1143 (72%), Gaps = 23/1143 (2%) |
NCBI |
Show Blast
|
| XP_002299206.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 722
Identities = 405/1049 (38%), Positives = 573/1049 (54%), Gaps = 66/1049 (6%) |
NCBI |
Show Blast
|
| YP_002894085.1 |
glycoside hydrolase family 2 TIM barrel [Tolumonas auensis DSM 9187]
Evalue: 0.0 | Bitscore: 716
Identities = 427/1096 (38%), Positives = 588/1096 (53%), Gaps = 110/1096 (10%) |
NCBI |
Show Blast
|
| AT3G54440.1 |
| Symbols: | glycoside hydrolase family 2 protein | chr3:20159472-20167997 REVERSE
Evalue: 0.0 | Bitscore: 712
Identities = 405/1049 (38%), Positives = 575/1049 (54%), Gaps = 53/1049 (5%) |
Tair |
Show Blast
|
| A1SWB8 |
Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 711
Identities = 419/1053 (39%), Positives = 575/1053 (54%), Gaps = 104/1053 (9%) |
SwissP |
Show Blast
|
| AT3G54440.2 |
| Symbols: | glycoside hydrolase family 2 protein | chr3:20159472-20167997 REVERSE
Evalue: 0.0 | Bitscore: 707
Identities = 405/1050 (38%), Positives = 575/1050 (54%), Gaps = 54/1050 (5%) |
Tair |
Show Blast
|
| Q6LL68 |
Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 702
Identities = 432/1112 (38%), Positives = 591/1112 (53%), Gaps = 124/1112 (11%) |
SwissP |
Show Blast
|
| YP_131707.1 |
beta-D-galactosidase [Photobacterium profundum SS9] sp|Q6LL68.1|BGAL_PHOPR RecName: Full=Beta-galactosidase; Short=Beta-gal; AltName: Full=Lactase
Evalue: 0.0 | Bitscore: 701
Identities = 428/1108 (38%), Positives = 589/1108 (53%), Gaps = 122/1108 (11%) |
NCBI |
Show Blast
|
| ZP_01217817.1 |
putative beta-galactosidase [Photobacterium profundum 3TCK]
Evalue: 0.0 | Bitscore: 700
Identities = 429/1104 (38%), Positives = 580/1104 (52%), Gaps = 114/1104 (10%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ78262.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 646
Identities = 408/1077 (37%), Positives = 546/1077 (50%), Gaps = 155/1077 (14%) |
GOS |
Show Blast
|
| EAI29421.1 |
unknown [environmental sequence]
Evalue: 1e-161 | Bitscore: 571
Identities = 365/1080 (33%), Positives = 541/1080 (50%), Gaps = 139/1080 (12%) |
GOS |
Show Blast
|
| EAK11745.1 |
unknown [environmental sequence]
Evalue: 1e-158 | Bitscore: 560
Identities = 341/1014 (33%), Positives = 513/1014 (50%), Gaps = 119/1014 (11%) |
GOS |
Show Blast
|
| EAK41551.1 |
unknown [environmental sequence]
Evalue: 1e-154 | Bitscore: 545
Identities = 348/1110 (31%), Positives = 544/1110 (49%), Gaps = 119/1110 (10%) |
GOS |
Show Blast
|
| EAK40796.1 |
unknown [environmental sequence]
Evalue: 1e-150 | Bitscore: 532
Identities = 355/1085 (32%), Positives = 543/1085 (50%), Gaps = 91/1085 (8%) |
GOS |
Show Blast
|
| EAI73334.1 |
unknown [environmental sequence]
Evalue: 1e-150 | Bitscore: 531
Identities = 313/747 (41%), Positives = 413/747 (55%), Gaps = 71/747 (9%) |
GOS |
Show Blast
|
| EAJ17443.1 |
unknown [environmental sequence]
Evalue: 1e-145 | Bitscore: 516
Identities = 311/783 (39%), Positives = 414/783 (52%), Gaps = 80/783 (10%) |
GOS |
Show Blast
|
| EAJ84983.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 488
Identities = 260/655 (39%), Positives = 378/655 (57%), Gaps = 38/655 (5%) |
GOS |
Show Blast
|
| EAK59587.1 |
unknown [environmental sequence]
Evalue: 1e-129 | Bitscore: 463
Identities = 259/676 (38%), Positives = 371/676 (54%), Gaps = 39/676 (5%) |
GOS |
Show Blast
|
| EAI87534.1 |
unknown [environmental sequence]
Evalue: 1e-114 | Bitscore: 415
Identities = 239/639 (37%), Positives = 335/639 (52%), Gaps = 58/639 (9%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54622.1 |
putative beta-galactosidase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3519
Identities = 1692/1692 (100%), Positives = 1692/1692 (100%), Gaps = 0/1692 (0%) |
NCBI |
Show Blast
|
| XP_001416385.1 |
Beta-galactosidase, putative [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1427
Identities = 678/1143 (59%), Positives = 829/1143 (72%), Gaps = 23/1143 (2%) |
NCBI |
Show Blast
|
| XP_002299206.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 722
Identities = 405/1049 (38%), Positives = 573/1049 (54%), Gaps = 66/1049 (6%) |
NCBI |
Show Blast
|
| YP_002894085.1 |
glycoside hydrolase family 2 TIM barrel [Tolumonas auensis DSM 9187]
Evalue: 0.0 | Bitscore: 716
Identities = 427/1096 (38%), Positives = 588/1096 (53%), Gaps = 110/1096 (10%) |
NCBI |
Show Blast
|
| YP_131707.1 |
beta-D-galactosidase [Photobacterium profundum SS9] sp|Q6LL68.1|BGAL_PHOPR RecName: Full=Beta-galactosidase; Short=Beta-gal; AltName: Full=Lactase
Evalue: 0.0 | Bitscore: 701
Identities = 428/1108 (38%), Positives = 589/1108 (53%), Gaps = 122/1108 (11%) |
NCBI |
Show Blast
|
| ZP_01217817.1 |
putative beta-galactosidase [Photobacterium profundum 3TCK]
Evalue: 0.0 | Bitscore: 700
Identities = 429/1104 (38%), Positives = 580/1104 (52%), Gaps = 114/1104 (10%) |
NCBI |
Show Blast
|
| NP_763225.2 |
beta-D-galactosidase [Vibrio vulnificus CMCP6] sp|Q8D4H3.2|BGAL_VIBVU RecName: Full=Beta-galactosidase; Short=Beta-gal; AltName: Full=Lactase
Evalue: 0.0 | Bitscore: 696
Identities = 433/1111 (38%), Positives = 594/1111 (53%), Gaps = 137/1111 (12%) |
NCBI |
Show Blast
|
| AAK29750.1 |
beta-galactosidase [Vibrio vulnificus]
Evalue: 0.0 | Bitscore: 693
Identities = 429/1113 (38%), Positives = 593/1113 (53%), Gaps = 142/1113 (12%) |
NCBI |
Show Blast
|
| AAO08215.1 |
Beta-galactosidase/beta-glucuronidase [Vibrio vulnificus CMCP6]
Evalue: 0.0 | Bitscore: 692
Identities = 420/1058 (39%), Positives = 576/1058 (54%), Gaps = 120/1058 (11%) |
NCBI |
Show Blast
|
| AAK15465.1 |
beta-galactosidase [Vibrio vulnificus]
Evalue: 0.0 | Bitscore: 691
Identities = 428/1113 (38%), Positives = 592/1113 (53%), Gaps = 142/1113 (12%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g03560 |
chrom07.0001 [579614..580371,580403..580428,580547..580640, 580712..581318] incomplete
Evalue: 6e-51 | Bitscore: 198
Identities = 84/86 (97%), Positives = 86/86 (100%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A1SWB8 |
Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 711
Identities = 419/1053 (39%), Positives = 575/1053 (54%), Gaps = 104/1053 (9%) |
SwissP |
Show Blast
|
| Q6LL68 |
Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 702
Identities = 432/1112 (38%), Positives = 591/1112 (53%), Gaps = 124/1112 (11%) |
SwissP |
Show Blast
|
| Q8D4H3 |
Beta-galactosidase OS=Vibrio vulnificus GN=lacZ PE=3 SV=2
Evalue: 0.0 | Bitscore: 697
Identities = 435/1124 (38%), Positives = 596/1124 (53%), Gaps = 157/1124 (13%) |
SwissP |
Show Blast
|
| P81650 |
Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2
Evalue: 0.0 | Bitscore: 697
Identities = 433/1118 (38%), Positives = 587/1118 (52%), Gaps = 147/1118 (13%) |
SwissP |
Show Blast
|
| Q7MG04 |
Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 690
Identities = 432/1126 (38%), Positives = 595/1126 (52%), Gaps = 162/1126 (14%) |
SwissP |
Show Blast
|
| B4S2K9 |
Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 679
Identities = 433/1127 (38%), Positives = 573/1127 (50%), Gaps = 146/1127 (12%) |
SwissP |
Show Blast
|
| A1JTC4 |
Beta-galactosidase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 672
Identities = 413/1095 (37%), Positives = 567/1095 (51%), Gaps = 127/1095 (11%) |
SwissP |
Show Blast
|
| Q2XQU3 |
Beta-galactosidase 2 OS=Enterobacter cloacae GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 663
Identities = 419/1104 (37%), Positives = 558/1104 (50%), Gaps = 124/1104 (11%) |
SwissP |
Show Blast
|
| A7MN76 |
Beta-galactosidase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 658
Identities = 419/1109 (37%), Positives = 562/1109 (50%), Gaps = 134/1109 (12%) |
SwissP |
Show Blast
|
| B1LIM9 |
Beta-galactosidase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lacZ PE=3 SV=1
Evalue: 0.0 | Bitscore: 652
Identities = 405/1093 (37%), Positives = 554/1093 (50%), Gaps = 101/1093 (9%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G54440.1 |
| Symbols: | glycoside hydrolase family 2 protein | chr3:20159472-20167997 REVERSE
Evalue: 0.0 | Bitscore: 712
Identities = 405/1049 (38%), Positives = 575/1049 (54%), Gaps = 53/1049 (5%) |
Tair |
Show Blast
|
| AT3G54440.2 |
| Symbols: | glycoside hydrolase family 2 protein | chr3:20159472-20167997 REVERSE
Evalue: 0.0 | Bitscore: 707
Identities = 405/1050 (38%), Positives = 575/1050 (54%), Gaps = 54/1050 (5%) |
Tair |
Show Blast
|
| AT5G05920.1 |
| Symbols: EDA22, DHS | DHS (embryo sac development arrest 22) | chr5:1777782-1779700 REVERSE
Evalue: 2e-82 | Bitscore: 305
Identities = 136/189 (71%), Positives = 158/189 (83%), Gaps = 1/189 (0%) |
Tair |
Show Blast
|
| AT5G05920.2 |
| Symbols: EDA22, DHS | DHS (embryo sac development arrest 22) | chr5:1777903-1779700 REVERSE
Evalue: 1e-73 | Bitscore: 275
Identities = 122/173 (70%), Positives = 143/173 (82%), Gaps = 1/173 (0%) |
Tair |
Show Blast
|
| AT2G01490.1 |
| Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221315-223186 FORWARD
Evalue: 1e-59 | Bitscore: 229
Identities = 117/273 (42%), Positives = 171/273 (62%), Gaps = 4/273 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CTZ66-B08.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ72-G01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ89-E12.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 427111..427747,735318..735341 |
Strand - |
| EST ID | CTZ91-F12.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ93-F01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
|
