- Gene ID
- Ot07g02680
- Locus
- Ot07g02680
- Functional Description
- Tryptophan synthase beta chain (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 4h54
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
| Sorry, only history comparison allowed for non logged in users!! |
Compare this version with :
Go! |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Tryptophan synthase beta chain (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
catalytic activity
2.
pyridoxal phosphate binding
- Biological Process
-
1.
metabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
G3DSA:3.90.1410.10 |
no description |
Gene3D |
|
PF09273 |
Rubis-subs-bind |
HMMPfam |
|
SSF82199 |
SET domain |
superfamily |
|
SSF81822 |
RuBisCo LSMT C-terminal, substrate-binding domain |
superfamily |
|
IPR006654 |
Tryptophan synthase, beta chain |
InterPro |
|
IPR006653 |
Tryptophan synthase, beta chain, conserved site |
InterPro |
|
IPR001926 |
Pyridoxal phosphate-dependent enzyme, beta subunit |
InterPro |
|
PTHR10314 |
SER/THR DEHYDRATASE, TRP SYNTHASE |
HMMPanther |
|
G3DSA:3.40.50.1100 |
no description |
Gene3D |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54541.1 |
tryptophan synthase beta-subunit (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1514
Identities = 863/863 (100%), Positives = 863/863 (100%), Gaps = 0/863 (0%) |
NCBI |
Show Blast
|
| XP_001418947.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 715
Identities = 369/394 (93%), Positives = 378/394 (95%), Gaps = 0/394 (0%) |
NCBI |
Show Blast
|
| XP_002499638.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 646
Identities = 328/392 (83%), Positives = 353/392 (90%), Gaps = 5/392 (1%) |
NCBI |
Show Blast
|
| EEH58138.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 641
Identities = 328/392 (83%), Positives = 349/392 (89%), Gaps = 5/392 (1%) |
NCBI |
Show Blast
|
| XP_002443820.1 |
hypothetical protein SORBIDRAFT_07g002770 [Sorghum bicolor]
Evalue: 5e-172 | Bitscore: 609
Identities = 297/392 (75%), Positives = 333/392 (84%), Gaps = 1/392 (0%) |
NCBI |
Show Blast
|
| XP_002281484.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-171 | Bitscore: 608
Identities = 308/388 (79%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| CBI23954.1 |
unnamed protein product [Vitis vinifera]
Evalue: 1e-171 | Bitscore: 608
Identities = 308/388 (79%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| O50046 |
Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
Evalue: 1e-171 | Bitscore: 603
Identities = 290/388 (74%), Positives = 321/388 (82%), Gaps = 1/388 (0%) |
SwissP |
Show Blast
|
| ABR17785.1 |
unknown [Picea sitchensis]
Evalue: 2e-170 | Bitscore: 603
Identities = 306/389 (78%), Positives = 343/389 (88%), Gaps = 2/389 (0%) |
NCBI |
Show Blast
|
| O50046 |
RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor
Evalue: 7e-170 | Bitscore: 602
Identities = 303/388 (78%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAI45124.1 |
unknown [environmental sequence]
Evalue: 1e-135 | Bitscore: 481
Identities = 228/366 (62%), Positives = 279/366 (76%), Gaps = 5/366 (1%) |
GOS |
Show Blast
|
| EAJ92898.1 |
unknown [environmental sequence]
Evalue: 1e-132 | Bitscore: 471
Identities = 232/392 (59%), Positives = 288/392 (73%), Gaps = 8/392 (2%) |
GOS |
Show Blast
|
| EAK50985.1 |
unknown [environmental sequence]
Evalue: 1e-128 | Bitscore: 460
Identities = 223/386 (57%), Positives = 279/386 (72%), Gaps = 6/386 (1%) |
GOS |
Show Blast
|
| EAI91652.1 |
unknown [environmental sequence]
Evalue: 1e-128 | Bitscore: 459
Identities = 231/392 (58%), Positives = 283/392 (72%), Gaps = 6/392 (1%) |
GOS |
Show Blast
|
| EAJ18614.1 |
unknown [environmental sequence]
Evalue: 1e-128 | Bitscore: 459
Identities = 230/374 (61%), Positives = 277/374 (74%), Gaps = 6/374 (1%) |
GOS |
Show Blast
|
| EAH92968.1 |
unknown [environmental sequence]
Evalue: 1e-128 | Bitscore: 458
Identities = 229/392 (58%), Positives = 284/392 (72%), Gaps = 6/392 (1%) |
GOS |
Show Blast
|
| EAJ52654.1 |
unknown [environmental sequence]
Evalue: 1e-128 | Bitscore: 458
Identities = 221/374 (59%), Positives = 281/374 (75%), Gaps = 6/374 (1%) |
GOS |
Show Blast
|
| EAI23467.1 |
unknown [environmental sequence]
Evalue: 1e-126 | Bitscore: 454
Identities = 220/386 (56%), Positives = 276/386 (71%), Gaps = 7/386 (1%) |
GOS |
Show Blast
|
| EAK59306.1 |
unknown [environmental sequence]
Evalue: 1e-126 | Bitscore: 451
Identities = 224/390 (57%), Positives = 282/390 (72%), Gaps = 6/390 (1%) |
GOS |
Show Blast
|
| EAK16320.1 |
unknown [environmental sequence]
Evalue: 1e-125 | Bitscore: 450
Identities = 225/386 (58%), Positives = 278/386 (72%), Gaps = 6/386 (1%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54541.1 |
tryptophan synthase beta-subunit (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1514
Identities = 863/863 (100%), Positives = 863/863 (100%), Gaps = 0/863 (0%) |
NCBI |
Show Blast
|
| XP_001418947.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 715
Identities = 369/394 (93%), Positives = 378/394 (95%), Gaps = 0/394 (0%) |
NCBI |
Show Blast
|
| XP_002499638.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 646
Identities = 328/392 (83%), Positives = 353/392 (90%), Gaps = 5/392 (1%) |
NCBI |
Show Blast
|
| EEH58138.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 641
Identities = 328/392 (83%), Positives = 349/392 (89%), Gaps = 5/392 (1%) |
NCBI |
Show Blast
|
| XP_002443820.1 |
hypothetical protein SORBIDRAFT_07g002770 [Sorghum bicolor]
Evalue: 5e-172 | Bitscore: 609
Identities = 297/392 (75%), Positives = 333/392 (84%), Gaps = 1/392 (0%) |
NCBI |
Show Blast
|
| XP_002281484.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-171 | Bitscore: 608
Identities = 308/388 (79%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| CBI23954.1 |
unnamed protein product [Vitis vinifera]
Evalue: 1e-171 | Bitscore: 608
Identities = 308/388 (79%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| ABR17785.1 |
unknown [Picea sitchensis]
Evalue: 2e-170 | Bitscore: 603
Identities = 306/389 (78%), Positives = 343/389 (88%), Gaps = 2/389 (0%) |
NCBI |
Show Blast
|
| O50046 |
RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; Flags: Precursor
Evalue: 7e-170 | Bitscore: 602
Identities = 303/388 (78%), Positives = 340/388 (87%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| P43284 |
RecName: Full=Tryptophan synthase beta chain 2, chloroplastic; AltName: Full=Orange pericarp 2; Flags: Precursor
Evalue: 1e-169 | Bitscore: 601
Identities = 296/388 (76%), Positives = 329/388 (84%), Gaps = 1/388 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot11g02690 |
chrom11.0001 [449916..451157]
Evalue: 3e-06 | Bitscore: 49
Identities = 92/367 (25%), Positives = 145/367 (39%), Gaps = 53/367 (14%) |
Self |
Show Blast
|
| Ot05g03250 |
chrom05.0001 [504533..505855]
Evalue: 0.0003 | Bitscore: 42
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%) |
Self |
Show Blast
|
| Ot09g01960 |
chrom09.0001 [291048..292073]
Evalue: 0.0006 | Bitscore: 41
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 14/90 (15%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| O50046 |
Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
Evalue: 1e-171 | Bitscore: 603
Identities = 290/388 (74%), Positives = 321/388 (82%), Gaps = 1/388 (0%) |
SwissP |
Show Blast
|
| P43284 |
Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1
Evalue: 1e-169 | Bitscore: 596
Identities = 289/388 (74%), Positives = 319/388 (82%), Gaps = 1/388 (0%) |
SwissP |
Show Blast
|
| P14671 |
Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1
Evalue: 1e-169 | Bitscore: 596
Identities = 292/388 (75%), Positives = 321/388 (82%), Gaps = 1/388 (0%) |
SwissP |
Show Blast
|
| P43283 |
Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1
Evalue: 1e-169 | Bitscore: 596
Identities = 286/374 (76%), Positives = 315/374 (84%), Gaps = 1/374 (0%) |
SwissP |
Show Blast
|
| P25269 |
Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2
Evalue: 1e-167 | Bitscore: 590
Identities = 290/393 (73%), Positives = 323/393 (82%), Gaps = 1/393 (0%) |
SwissP |
Show Blast
|
| Q118P8 |
Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1
Evalue: 1e-166 | Bitscore: 585
Identities = 280/391 (71%), Positives = 315/391 (80%), Gaps = 1/391 (0%) |
SwissP |
Show Blast
|
| Q8YQM6 |
Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1
Evalue: 1e-165 | Bitscore: 583
Identities = 279/391 (71%), Positives = 319/391 (81%), Gaps = 1/391 (0%) |
SwissP |
Show Blast
|
| Q3MBV3 |
Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1
Evalue: 1e-165 | Bitscore: 583
Identities = 278/391 (71%), Positives = 319/391 (81%), Gaps = 1/391 (0%) |
SwissP |
Show Blast
|
| Q59992 |
Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1
Evalue: 1e-163 | Bitscore: 577
Identities = 277/388 (71%), Positives = 313/388 (80%), Gaps = 1/388 (0%) |
SwissP |
Show Blast
|
| Q8YZP7 |
Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1
Evalue: 1e-163 | Bitscore: 575
Identities = 271/387 (70%), Positives = 315/387 (81%), Gaps = 1/387 (0%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G54810.1 |
| Symbols: TRPB, TRP2, TSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT) | chr5:22282031-22283964 REVERSE
Evalue: 1e-170 | Bitscore: 596
Identities = 292/388 (75%), Positives = 321/388 (82%), Gaps = 1/388 (0%) |
Tair |
Show Blast
|
| AT4G27070.1 |
| Symbols: TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT); tryptophan synthase | chr4:13586570-13588625 FORWARD
Evalue: 1e-168 | Bitscore: 590
Identities = 290/393 (73%), Positives = 323/393 (82%), Gaps = 1/393 (0%) |
Tair |
Show Blast
|
| AT5G28237.1 |
| Symbols: | tryptophan synthase, beta subunit, putative | chr5:10207481-10213546 REVERSE
Evalue: 1e-129 | Bitscore: 459
Identities = 217/377 (57%), Positives = 280/377 (74%), Gaps = 7/377 (1%) |
Tair |
Show Blast
|
| AT5G38530.1 |
| Symbols: | tryptophan synthase-related | chr5:15441327-15443524 FORWARD
Evalue: 2e-25 | Bitscore: 114
Identities = 101/336 (30%), Positives = 145/336 (43%), Gaps = 50/336 (14%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CTZ60-E06.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 426619..427131,493914..493935 |
Strand - |
| EST ID | CTZ85-G08.y1d-s |
Support Model | Y |
More Info |
| Mapping Location | 426919..427747 |
Strand - |
| EST ID | CTZ89-E12.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 427111..427747,735318..735341 |
Strand - |
|
