- Gene ID
- Ot04g04510
- Locus
- Ot04g04510
- Functional Description
- ubiquitin specific protease 5 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom04
- Last Modified On
- 09 March 2010 1h06
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- ubiquitin specific protease 5 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
cysteine-type endopeptidase activity
2.
obsolete ubiquitin thiolesterase activity
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
G3DSA:1.10.8.30 |
no description |
Gene3D |
|
IPR001607 |
Zinc finger, UBP-type |
InterPro |
|
IPR000449 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal |
InterPro |
|
IPR015940 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote |
InterPro |
|
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
InterPro |
|
SSF54001 |
Cysteine proteinases |
superfamily |
|
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
InterPro |
|
PTHR10420 |
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED |
HMMPanther |
|
IPR009060 |
UBA-like |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51849.1 |
ubiquitin specific protease 5 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1348
Identities = 649/649 (100%), Positives = 649/649 (100%), Gaps = 0/649 (0%) |
NCBI |
Show Blast
|
| XP_001417342.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1122
Identities = 546/645 (84%), Positives = 586/645 (90%), Gaps = 6/645 (0%) |
NCBI |
Show Blast
|
| EEH56731.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 792
Identities = 408/673 (60%), Positives = 486/673 (72%), Gaps = 35/673 (5%) |
NCBI |
Show Blast
|
| XP_002504065.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 764
Identities = 414/683 (60%), Positives = 492/683 (72%), Gaps = 49/683 (7%) |
NCBI |
Show Blast
|
| EEY64027.1 |
ubiquitin carboxyl-terminal hydrolase, putative [Phytophthora infestans T30-4]
Evalue: 6e-173 | Bitscore: 612
Identities = 332/676 (49%), Positives = 431/676 (63%), Gaps = 44/676 (6%) |
NCBI |
Show Blast
|
| XP_001641941.1 |
predicted protein [Nematostella vectensis]
Evalue: 3e-161 | Bitscore: 573
Identities = 297/654 (45%), Positives = 402/654 (61%), Gaps = 51/654 (7%) |
NCBI |
Show Blast
|
| XP_001370137.1 |
PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 5 (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease
Evalue: 1e-159 | Bitscore: 567
Identities = 297/683 (43%), Positives = 421/683 (61%), Gaps = 60/683 (8%) |
NCBI |
Show Blast
|
| XP_001701682.1 |
predicted protein [Chlamydomonas reinhardtii]
Evalue: 2e-159 | Bitscore: 567
Identities = 326/662 (49%), Positives = 422/662 (63%), Gaps = 66/662 (9%) |
NCBI |
Show Blast
|
| BAE32312.1 |
unnamed protein product [Mus musculus]
Evalue: 2e-156 | Bitscore: 556
Identities = 294/660 (44%), Positives = 412/660 (62%), Gaps = 39/660 (5%) |
NCBI |
Show Blast
|
| pdb|3IHP|A |
Chain A, Covalent Ubiquitin-Usp5 Complex pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Evalue: 2e-156 | Bitscore: 556
Identities = 294/660 (44%), Positives = 412/660 (62%), Gaps = 39/660 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC99188.1 |
unknown [environmental sequence]
Evalue: 1e-103 | Bitscore: 376
Identities = 203/256 (79%), Positives = 230/256 (89%), Gaps = 2/256 (0%) |
GOS |
Show Blast
|
| EAD33758.1 |
unknown [environmental sequence]
Evalue: 1e-82 | Bitscore: 307
Identities = 163/255 (63%), Positives = 193/255 (75%), Gaps = 7/255 (2%) |
GOS |
Show Blast
|
| EAD37935.1 |
unknown [environmental sequence]
Evalue: 2e-62 | Bitscore: 239
Identities = 111/118 (94%), Positives = 116/118 (98%) |
GOS |
Show Blast
|
| EAC75503.1 |
unknown [environmental sequence]
Evalue: 4e-56 | Bitscore: 219
Identities = 102/134 (76%), Positives = 119/134 (88%) |
GOS |
Show Blast
|
| EAC38752.1 |
unknown [environmental sequence]
Evalue: 8e-48 | Bitscore: 191
Identities = 103/235 (43%), Positives = 153/235 (65%), Gaps = 21/235 (8%) |
GOS |
Show Blast
|
| EAH50024.1 |
unknown [environmental sequence]
Evalue: 5e-34 | Bitscore: 145
Identities = 110/283 (38%), Positives = 150/283 (53%), Gaps = 22/283 (7%) |
GOS |
Show Blast
|
| EAI00348.1 |
unknown [environmental sequence]
Evalue: 4e-07 | Bitscore: 56
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%) |
GOS |
Show Blast
|
| EAH54520.1 |
unknown [environmental sequence]
Evalue: 2e-05 | Bitscore: 50
Identities = 61/282 (21%), Positives = 111/282 (39%), Gaps = 60/282 (21%) |
GOS |
Show Blast
|
| EAF52416.1 |
unknown [environmental sequence]
Evalue: 0.0002 | Bitscore: 47
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51849.1 |
ubiquitin specific protease 5 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1348
Identities = 649/649 (100%), Positives = 649/649 (100%), Gaps = 0/649 (0%) |
NCBI |
Show Blast
|
| XP_001417342.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1122
Identities = 546/645 (84%), Positives = 586/645 (90%), Gaps = 6/645 (0%) |
NCBI |
Show Blast
|
| EEH56731.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 792
Identities = 408/673 (60%), Positives = 486/673 (72%), Gaps = 35/673 (5%) |
NCBI |
Show Blast
|
| XP_002504065.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 764
Identities = 414/683 (60%), Positives = 492/683 (72%), Gaps = 49/683 (7%) |
NCBI |
Show Blast
|
| EEY64027.1 |
ubiquitin carboxyl-terminal hydrolase, putative [Phytophthora infestans T30-4]
Evalue: 6e-173 | Bitscore: 612
Identities = 332/676 (49%), Positives = 431/676 (63%), Gaps = 44/676 (6%) |
NCBI |
Show Blast
|
| XP_001641941.1 |
predicted protein [Nematostella vectensis]
Evalue: 3e-161 | Bitscore: 573
Identities = 297/654 (45%), Positives = 402/654 (61%), Gaps = 51/654 (7%) |
NCBI |
Show Blast
|
| XP_001370137.1 |
PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 5 (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease
Evalue: 1e-159 | Bitscore: 567
Identities = 297/683 (43%), Positives = 421/683 (61%), Gaps = 60/683 (8%) |
NCBI |
Show Blast
|
| XP_001701682.1 |
predicted protein [Chlamydomonas reinhardtii]
Evalue: 2e-159 | Bitscore: 567
Identities = 326/662 (49%), Positives = 422/662 (63%), Gaps = 66/662 (9%) |
NCBI |
Show Blast
|
| BAE32312.1 |
unnamed protein product [Mus musculus]
Evalue: 2e-156 | Bitscore: 556
Identities = 294/660 (44%), Positives = 412/660 (62%), Gaps = 39/660 (5%) |
NCBI |
Show Blast
|
| pdb|3IHP|A |
Chain A, Covalent Ubiquitin-Usp5 Complex pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Evalue: 2e-156 | Bitscore: 556
Identities = 294/660 (44%), Positives = 412/660 (62%), Gaps = 39/660 (5%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot01g03000 |
chrom01.0001 [467503..467517,467759..468093,468128..468481,
Evalue: 3e-08 | Bitscore: 55
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 16/121 (13%) |
Self |
Show Blast
|
| Ot17g01610 |
chrom17.0001 [232902..232914,233160..234628]
Evalue: 7e-06 | Bitscore: 47
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 62/258 (24%) |
Self |
Show Blast
|
| Ot04g02050 |
chrom04.0001 [301541..302729,302804..304869]
Evalue: 2e-05 | Bitscore: 45
Identities = 71/297 (23%), Positives = 114/297 (38%), Gaps = 49/297 (16%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P56399 |
Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1
Evalue: 1e-152 | Bitscore: 539
Identities = 297/682 (43%), Positives = 418/682 (61%), Gaps = 60/682 (8%) |
SwissP |
Show Blast
|
| P45974 |
Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2
Evalue: 1e-151 | Bitscore: 537
Identities = 297/682 (43%), Positives = 418/682 (61%), Gaps = 60/682 (8%) |
SwissP |
Show Blast
|
| Q5R407 |
Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1
Evalue: 1e-150 | Bitscore: 533
Identities = 296/682 (43%), Positives = 416/682 (60%), Gaps = 60/682 (8%) |
SwissP |
Show Blast
|
| Q8L6Y1 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1
Evalue: 1e-141 | Bitscore: 501
Identities = 274/648 (42%), Positives = 400/648 (61%), Gaps = 41/648 (6%) |
SwissP |
Show Blast
|
| P54201 |
Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum GN=ubpA PE=2 SV=2
Evalue: 1e-139 | Bitscore: 496
Identities = 274/665 (41%), Positives = 389/665 (58%), Gaps = 41/665 (6%) |
SwissP |
Show Blast
|
| Q92995 |
Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13 PE=1 SV=2
Evalue: 1e-131 | Bitscore: 471
Identities = 266/678 (39%), Positives = 390/678 (57%), Gaps = 59/678 (8%) |
SwissP |
Show Blast
|
| Q11119 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces pombe GN=ubp14 PE=1 SV=2
Evalue: 1e-75 | Bitscore: 284
Identities = 215/650 (33%), Positives = 322/650 (49%), Gaps = 71/650 (10%) |
SwissP |
Show Blast
|
| P38237 |
Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces cerevisiae GN=UBP14 PE=1 SV=2
Evalue: 2e-57 | Bitscore: 224
Identities = 185/663 (27%), Positives = 309/663 (46%), Gaps = 84/663 (12%) |
SwissP |
Show Blast
|
| Q80U87 |
Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2
Evalue: 8e-11 | Bitscore: 69
Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 44/292 (15%) |
SwissP |
Show Blast
|
| P40818 |
Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1
Evalue: 2e-10 | Bitscore: 67
Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 44/292 (15%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G20630.1 |
| Symbols: TTN6, ATUBP14, UBP14 | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease |
Evalue: 1e-142 | Bitscore: 501
Identities = 274/648 (42%), Positives = 400/648 (61%), Gaps = 41/648 (6%) |
Tair |
Show Blast
|
| AT4G39910.1 |
| Symbols: UBP3, ATUBP3 | ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease | chr4:18511852-18514133
Evalue: 3e-11 | Bitscore: 67
Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 28/299 (9%) |
Tair |
Show Blast
|
| AT2G22310.1 |
| Symbols: UBP4, ATUBP4 | ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease | chr2:9483813-9485905
Evalue: 4e-10 | Bitscore: 63
Identities = 72/302 (23%), Positives = 123/302 (40%), Gaps = 39/302 (12%) |
Tair |
Show Blast
|
| AT1G51710.1 |
| Symbols: UBP6 | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease | chr1:19179473-19183562
Evalue: 5e-08 | Bitscore: 56
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 52/279 (18%) |
Tair |
Show Blast
|
| AT1G51710.2 |
| Symbols: UBP6 | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) | chr1:19179473-19183067 REVERSE
Evalue: 5e-08 | Bitscore: 56
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 52/279 (18%) |
Tair |
Show Blast
|
| AT4G10570.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein | chr4:6523653-6528054 REVERSE
Evalue: 7e-07 | Bitscore: 52
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 11/113 (9%) |
Tair |
Show Blast
|
| AT1G32850.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein | chr1:11902609-11906880 FORWARD
Evalue: 8e-07 | Bitscore: 52
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 13/114 (11%) |
Tair |
Show Blast
|
| AT4G10590.2 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein | chr4:6538915-6543268 REVERSE
Evalue: 2e-06 | Bitscore: 51
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%) |
Tair |
Show Blast
|
| AT4G10590.1 |
| Symbols: | ubiquitin carboxyl-terminal hydrolase family protein | chr4:6538915-6543268 REVERSE
Evalue: 2e-06 | Bitscore: 51
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%) |
Tair |
Show Blast
|
| AT5G22030.2 |
| Symbols: | ubiquitin-specific protease 8, putative (UBP8) | chr5:7290158-7293597 REVERSE
Evalue: 3e-06 | Bitscore: 50
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 7/111 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01353 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 686442..686905 |
Strand - |
|
