Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Ostreococcus tauri


Gene ID
Ot04g00450
Locus
Ot04g00450
Functional Description
putative phosphofructokinase [Oryza sativa (ISS)
Gene Type
protein-coding gene
Contig
chrom04
Last Modified On
09 March 2010 0h03
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
putative phosphofructokinase [Oryza sativa (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
6-phosphofructokinase complex

Molecular Function
1.
6-phosphofructokinase activity

Biological Process
1.
glycolytic process

Protein Domains 


Domain IDDescriptionDatabase
IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 InterPro
PTHR13697 PHOSPHOFRUCTOKINASE HMMPanther
G3DSA:3.40.50.450 no description Gene3D
IPR000023 Phosphofructokinase InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL51443.1 putative phosphofructokinase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1009
Identities = 493/493 (100%), Positives = 493/493 (100%), Gaps = 0/493 (0%)
NCBI
Show Blast
XP_001417416.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 796
Identities = 390/438 (89%), Positives = 407/438 (92%), Gaps = 8/438 (1%)
NCBI
Show Blast
XP_002504425.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-164 | Bitscore: 583
Identities = 285/377 (75%), Positives = 324/377 (85%), Gaps = 3/377 (0%)
NCBI
Show Blast
EEH51099.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-150 | Bitscore: 535
Identities = 270/390 (69%), Positives = 313/390 (80%), Gaps = 14/390 (3%)
NCBI
Show Blast
XP_002462379.1 hypothetical protein SORBIDRAFT_02g024680 [Sorghum bicolor]
Evalue: 1e-127 | Bitscore: 461
Identities = 235/457 (51%), Positives = 310/457 (67%), Gaps = 19/457 (4%)
NCBI
Show Blast
NP_001063175.1 Os09g0415800 [Oryza sativa (japonica cultivar-group)]
Evalue: 3e-127 | Bitscore: 459
Identities = 234/459 (50%), Positives = 312/459 (67%), Gaps = 26/459 (5%)
NCBI
Show Blast
BAD28914.1 putative phosphofructokinase [Oryza sativa Japonica Group]
Evalue: 9e-127 | Bitscore: 457
Identities = 234/459 (50%), Positives = 312/459 (67%), Gaps = 26/459 (5%)
NCBI
Show Blast
XP_002530702.1 phosphofructokinase, putative [Ricinus communis]
Evalue: 5e-126 | Bitscore: 455
Identities = 228/413 (55%), Positives = 295/413 (71%), Gaps = 10/413 (2%)
NCBI
Show Blast
XP_002445557.1 hypothetical protein SORBIDRAFT_07g021500 [Sorghum bicolor]
Evalue: 1e-125 | Bitscore: 454
Identities = 231/454 (50%), Positives = 309/454 (68%), Gaps = 16/454 (3%)
NCBI
Show Blast
NP_001145725.1 hypothetical protein LOC100279231 [Zea mays]
Evalue: 2e-125 | Bitscore: 453
Identities = 229/446 (51%), Positives = 308/446 (69%), Gaps = 15/446 (3%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
Ot04g00450
Redo Blast
CDS Length
1482 nucleotides
CDS Sequence

Protein 

Locus ID
Ot04g00450
Redo Blast
Protein Length
494 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a