- Gene ID
- Ot04g00330
- Locus
- Ot04g00330
- Functional Description
- putative indole-3-glycerol phosphate lyase (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom04
- Last Modified On
- 09 March 2010 0h00
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative indole-3-glycerol phosphate lyase (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
tryptophan synthase activity
- Biological Process
-
1.
tryptophan metabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR018204 |
Tryptophan synthase, alpha chain, active site |
InterPro |
|
IPR013785 |
Aldolase-type TIM barrel |
InterPro |
|
IPR011060 |
Ribulose-phosphate binding barrel |
InterPro |
|
PTHR10314 |
SER/THR DEHYDRATASE, TRP SYNTHASE |
HMMPanther |
|
IPR002028 |
Tryptophan synthase, alpha chain |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51431.1 |
putative indole-3-glycerol phosphate lyase (ISS) [Ostreococcus tauri]
Evalue: 4e-142 | Bitscore: 508
Identities = 297/297 (100%), Positives = 297/297 (100%), Gaps = 0/297 (0%) |
NCBI |
Show Blast
|
| XP_001417123.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-118 | Bitscore: 429
Identities = 237/264 (89%), Positives = 250/264 (94%), Gaps = 0/264 (0%) |
NCBI |
Show Blast
|
| XP_002500301.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 8e-84 | Bitscore: 314
Identities = 175/263 (66%), Positives = 215/263 (81%), Gaps = 0/263 (0%) |
NCBI |
Show Blast
|
| EEH53604.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-82 | Bitscore: 308
Identities = 177/263 (67%), Positives = 210/263 (79%), Gaps = 0/263 (0%) |
NCBI |
Show Blast
|
| XP_001696973.1 |
tryptophan synthetase alpha subunit [Chlamydomonas reinhardtii]
Evalue: 7e-80 | Bitscore: 301
Identities = 166/255 (65%), Positives = 202/255 (79%), Gaps = 0/255 (0%) |
NCBI |
Show Blast
|
| XP_001754287.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-75 | Bitscore: 285
Identities = 150/262 (57%), Positives = 205/262 (78%), Gaps = 3/262 (1%) |
NCBI |
Show Blast
|
| YP_001733825.1 |
tryptophan synthase, alpha subunit [Synechococcus sp. PCC 7002] sp|Q8KX32.1|TRPA_SYNP2 RecName: Full=Tryptophan synthase alpha chain
Evalue: 1e-74 | Bitscore: 283
Identities = 157/259 (60%), Positives = 208/259 (80%), Gaps = 1/259 (0%) |
NCBI |
Show Blast
|
| XP_002459431.1 |
hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor]
Evalue: 3e-74 | Bitscore: 282
Identities = 148/261 (56%), Positives = 199/261 (76%), Gaps = 0/261 (0%) |
NCBI |
Show Blast
|
| ACJ02773.1 |
indole-3-glycerol phosphate lyase IGL2 [Lamium galeobdolon]
Evalue: 5e-74 | Bitscore: 281
Identities = 147/259 (56%), Positives = 198/259 (76%), Gaps = 0/259 (0%) |
NCBI |
Show Blast
|
| ACJ02772.1 |
indole-3-glycerol phosphate lyase IGL1 [Lamium galeobdolon]
Evalue: 2e-72 | Bitscore: 276
Identities = 142/259 (54%), Positives = 193/259 (74%), Gaps = 0/259 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK55124.1 |
unknown [environmental sequence]
Evalue: 4e-59 | Bitscore: 228
Identities = 111/240 (46%), Positives = 154/240 (64%) |
GOS |
Show Blast
|
| EAH38366.1 |
unknown [environmental sequence]
Evalue: 2e-58 | Bitscore: 225
Identities = 111/240 (46%), Positives = 151/240 (62%) |
GOS |
Show Blast
|
| EAC02802.1 |
unknown [environmental sequence]
Evalue: 3e-56 | Bitscore: 218
Identities = 119/204 (58%), Positives = 145/204 (71%) |
GOS |
Show Blast
|
| EAJ91005.1 |
unknown [environmental sequence]
Evalue: 9e-55 | Bitscore: 213
Identities = 103/219 (47%), Positives = 140/219 (63%), Gaps = 1/219 (0%) |
GOS |
Show Blast
|
| EAC15458.1 |
unknown [environmental sequence]
Evalue: 1e-53 | Bitscore: 209
Identities = 101/218 (46%), Positives = 140/218 (64%) |
GOS |
Show Blast
|
| EAI21649.1 |
unknown [environmental sequence]
Evalue: 3e-52 | Bitscore: 204
Identities = 113/249 (45%), Positives = 160/249 (64%), Gaps = 3/249 (1%) |
GOS |
Show Blast
|
| EAI45775.1 |
unknown [environmental sequence]
Evalue: 3e-51 | Bitscore: 201
Identities = 115/242 (47%), Positives = 160/242 (66%) |
GOS |
Show Blast
|
| EAG45372.1 |
unknown [environmental sequence]
Evalue: 9e-51 | Bitscore: 199
Identities = 95/200 (47%), Positives = 128/200 (64%) |
GOS |
Show Blast
|
| EAK49434.1 |
unknown [environmental sequence]
Evalue: 2e-50 | Bitscore: 199
Identities = 95/204 (46%), Positives = 130/204 (63%) |
GOS |
Show Blast
|
| EAH42596.1 |
unknown [environmental sequence]
Evalue: 4e-50 | Bitscore: 197
Identities = 98/211 (46%), Positives = 133/211 (63%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51431.1 |
putative indole-3-glycerol phosphate lyase (ISS) [Ostreococcus tauri]
Evalue: 4e-142 | Bitscore: 508
Identities = 297/297 (100%), Positives = 297/297 (100%), Gaps = 0/297 (0%) |
NCBI |
Show Blast
|
| XP_001417123.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-118 | Bitscore: 429
Identities = 237/264 (89%), Positives = 250/264 (94%), Gaps = 0/264 (0%) |
NCBI |
Show Blast
|
| XP_002500301.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 8e-84 | Bitscore: 314
Identities = 175/263 (66%), Positives = 215/263 (81%), Gaps = 0/263 (0%) |
NCBI |
Show Blast
|
| EEH53604.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-82 | Bitscore: 308
Identities = 177/263 (67%), Positives = 210/263 (79%), Gaps = 0/263 (0%) |
NCBI |
Show Blast
|
| XP_001696973.1 |
tryptophan synthetase alpha subunit [Chlamydomonas reinhardtii]
Evalue: 7e-80 | Bitscore: 301
Identities = 166/255 (65%), Positives = 202/255 (79%), Gaps = 0/255 (0%) |
NCBI |
Show Blast
|
| XP_001754287.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-75 | Bitscore: 285
Identities = 150/262 (57%), Positives = 205/262 (78%), Gaps = 3/262 (1%) |
NCBI |
Show Blast
|
| YP_001733825.1 |
tryptophan synthase, alpha subunit [Synechococcus sp. PCC 7002] sp|Q8KX32.1|TRPA_SYNP2 RecName: Full=Tryptophan synthase alpha chain
Evalue: 1e-74 | Bitscore: 283
Identities = 157/259 (60%), Positives = 208/259 (80%), Gaps = 1/259 (0%) |
NCBI |
Show Blast
|
| XP_002459431.1 |
hypothetical protein SORBIDRAFT_02g004580 [Sorghum bicolor]
Evalue: 3e-74 | Bitscore: 282
Identities = 148/261 (56%), Positives = 199/261 (76%), Gaps = 0/261 (0%) |
NCBI |
Show Blast
|
| ACJ02773.1 |
indole-3-glycerol phosphate lyase IGL2 [Lamium galeobdolon]
Evalue: 5e-74 | Bitscore: 281
Identities = 147/259 (56%), Positives = 198/259 (76%), Gaps = 0/259 (0%) |
NCBI |
Show Blast
|
| ACJ02772.1 |
indole-3-glycerol phosphate lyase IGL1 [Lamium galeobdolon]
Evalue: 2e-72 | Bitscore: 276
Identities = 142/259 (54%), Positives = 193/259 (74%), Gaps = 0/259 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q8KX32 |
Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1
Evalue: 6e-69 | Bitscore: 261
Identities = 139/259 (53%), Positives = 189/259 (72%), Gaps = 1/259 (0%) |
SwissP |
Show Blast
|
| B7JUK2 |
Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1
Evalue: 1e-66 | Bitscore: 253
Identities = 136/263 (51%), Positives = 181/263 (68%), Gaps = 1/263 (0%) |
SwissP |
Show Blast
|
| B0C6F8 |
Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1
Evalue: 1e-65 | Bitscore: 249
Identities = 129/260 (49%), Positives = 176/260 (67%), Gaps = 1/260 (0%) |
SwissP |
Show Blast
|
| Q31R76 |
Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1
Evalue: 5e-65 | Bitscore: 248
Identities = 134/251 (53%), Positives = 171/251 (68%), Gaps = 2/251 (0%) |
SwissP |
Show Blast
|
| Q5N324 |
Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpA PE=3 SV=1
Evalue: 5e-65 | Bitscore: 248
Identities = 134/251 (53%), Positives = 171/251 (68%), Gaps = 2/251 (0%) |
SwissP |
Show Blast
|
| B1WNQ1 |
Tryptophan synthase alpha chain OS=Cyanothece sp. (strain ATCC 51142) GN=trpA PE=3 SV=1
Evalue: 9e-65 | Bitscore: 247
Identities = 130/251 (51%), Positives = 172/251 (68%), Gaps = 1/251 (0%) |
SwissP |
Show Blast
|
| P77960 |
Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1
Evalue: 2e-64 | Bitscore: 245
Identities = 135/261 (51%), Positives = 177/261 (67%), Gaps = 1/261 (0%) |
SwissP |
Show Blast
|
| B0JXU3 |
Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1
Evalue: 9e-64 | Bitscore: 243
Identities = 127/252 (50%), Positives = 175/252 (69%), Gaps = 1/252 (0%) |
SwissP |
Show Blast
|
| Q10W95 |
Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1
Evalue: 1e-63 | Bitscore: 243
Identities = 133/253 (52%), Positives = 173/253 (68%), Gaps = 4/253 (1%) |
SwissP |
Show Blast
|
| B8HPH2 |
Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1
Evalue: 1e-62 | Bitscore: 240
Identities = 131/260 (50%), Positives = 170/260 (65%), Gaps = 4/260 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G02610.1 |
| Symbols: | tryptophan synthase, alpha subunit, putative | chr4:1147662-1149217 FORWARD
Evalue: 3e-69 | Bitscore: 258
Identities = 130/260 (50%), Positives = 177/260 (68%) |
Tair |
Show Blast
|
| AT3G54640.1 |
| Symbols: TRP3, TSA1 | TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase | chr3:20234309-20236281 REVERSE
Evalue: 3e-63 | Bitscore: 238
Identities = 130/260 (50%), Positives = 180/260 (69%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
