- Gene ID
- Ot03g02250
- Locus
- Ot03g02250
- Functional Description
- Cyclin H (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom03
- Last Modified On
- 08 March 2010 22h57
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Cyclin H (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAV68602.1 |
cyclin H [Ostreococcus tauri]
Evalue: 3e-147 | Bitscore: 525
Identities = 322/322 (100%), Positives = 322/322 (100%), Gaps = 0/322 (0%) |
NCBI |
Show Blast
|
| XP_001416639.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-90 | Bitscore: 335
Identities = 176/236 (74%), Positives = 202/236 (85%), Gaps = 3/236 (1%) |
NCBI |
Show Blast
|
| EEH53267.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-38 | Bitscore: 163
Identities = 82/161 (50%), Positives = 115/161 (71%), Gaps = 5/161 (3%) |
NCBI |
Show Blast
|
| XP_002506714.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 7e-35 | Bitscore: 152
Identities = 112/301 (37%), Positives = 155/301 (51%), Gaps = 31/301 (10%) |
NCBI |
Show Blast
|
| NP_001149855.1 |
LOC100283483 [Zea mays]
Evalue: 2e-34 | Bitscore: 150
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| ACN31885.1 |
unknown [Zea mays]
Evalue: 2e-34 | Bitscore: 150
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| XP_001779669.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-34 | Bitscore: 150
Identities = 99/231 (42%), Positives = 137/231 (59%), Gaps = 8/231 (3%) |
NCBI |
Show Blast
|
| XP_002466497.1 |
hypothetical protein SORBIDRAFT_01g008760 [Sorghum bicolor]
Evalue: 1e-33 | Bitscore: 148
Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| NP_001051203.1 |
Os03g0737600 [Oryza sativa (japonica cultivar-group)] sp|Q10D80.1|CCH11_ORYSJ RecName: Full=Cyclin-H1-1; Short=CycH1;1; AltName: Full=Cyclin-H-1;
Evalue: 4e-33 | Bitscore: 145
Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 2/225 (0%) |
NCBI |
Show Blast
|
| AAR07076.1 |
cyclin H-1 [Oryza sativa Japonica Group]
Evalue: 4e-33 | Bitscore: 145
Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 2/225 (0%) |
NCBI |
Show Blast
|
| No hits found against database GOS with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAV68602.1 |
cyclin H [Ostreococcus tauri]
Evalue: 3e-147 | Bitscore: 525
Identities = 322/322 (100%), Positives = 322/322 (100%), Gaps = 0/322 (0%) |
NCBI |
Show Blast
|
| XP_001416639.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-90 | Bitscore: 335
Identities = 176/236 (74%), Positives = 202/236 (85%), Gaps = 3/236 (1%) |
NCBI |
Show Blast
|
| EEH53267.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-38 | Bitscore: 163
Identities = 82/161 (50%), Positives = 115/161 (71%), Gaps = 5/161 (3%) |
NCBI |
Show Blast
|
| XP_002506714.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 7e-35 | Bitscore: 152
Identities = 112/301 (37%), Positives = 155/301 (51%), Gaps = 31/301 (10%) |
NCBI |
Show Blast
|
| NP_001149855.1 |
LOC100283483 [Zea mays]
Evalue: 2e-34 | Bitscore: 150
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| ACN31885.1 |
unknown [Zea mays]
Evalue: 2e-34 | Bitscore: 150
Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| XP_001779669.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-34 | Bitscore: 150
Identities = 99/231 (42%), Positives = 137/231 (59%), Gaps = 8/231 (3%) |
NCBI |
Show Blast
|
| XP_002466497.1 |
hypothetical protein SORBIDRAFT_01g008760 [Sorghum bicolor]
Evalue: 1e-33 | Bitscore: 148
Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 4/226 (1%) |
NCBI |
Show Blast
|
| NP_001051203.1 |
Os03g0737600 [Oryza sativa (japonica cultivar-group)] sp|Q10D80.1|CCH11_ORYSJ RecName: Full=Cyclin-H1-1; Short=CycH1;1; AltName: Full=Cyclin-H-1;
Evalue: 4e-33 | Bitscore: 145
Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 2/225 (0%) |
NCBI |
Show Blast
|
| AAR07076.1 |
cyclin H-1 [Oryza sativa Japonica Group]
Evalue: 4e-33 | Bitscore: 145
Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 2/225 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q10D80 |
Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1
Evalue: 2e-32 | Bitscore: 139
Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 4/226 (1%) |
SwissP |
Show Blast
|
| Q8W5S1 |
Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1
Evalue: 2e-30 | Bitscore: 133
Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 2/225 (0%) |
SwissP |
Show Blast
|
| Q4R7U4 |
Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1
Evalue: 5e-21 | Bitscore: 102
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| P51946 |
Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1
Evalue: 5e-21 | Bitscore: 102
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| Q61458 |
Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2
Evalue: 9e-21 | Bitscore: 100
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| Q3ZBL9 |
Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1
Evalue: 1e-20 | Bitscore: 100
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| Q9R1A0 |
Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2
Evalue: 2e-20 | Bitscore: 100
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| P51947 |
Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1
Evalue: 1e-19 | Bitscore: 97
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%) |
SwissP |
Show Blast
|
| P36613 |
Cyclin mcs2 OS=Schizosaccharomyces pombe GN=mcs2 PE=1 SV=1
Evalue: 2e-15 | Bitscore: 83
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 2/157 (1%) |
SwissP |
Show Blast
|
| Q55F19 |
Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1
Evalue: 1e-14 | Bitscore: 80
Identities = 34/118 (28%), Positives = 65/118 (55%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G27620.1 |
| Symbols: CYCH;1 | CYCH;1 (CYCLIN H;1); cyclin-dependent protein kinase/ protein binding / protein kinase |
Evalue: 2e-31 | Bitscore: 133
Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 2/225 (0%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CTZ23-D10.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 220030..220057,443870..444477 |
Strand + |
| EST ID | OtEST03223 |
Support Model | Y |
More Info |
| Mapping Location | 356309..357139 |
Strand + |
|
