- Gene ID
- Ot02g05640
- Locus
- Ot02g05640
- Functional Description
- putative ubiquitin-specific protease UBP12 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 21h47
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative ubiquitin-specific protease UBP12 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
cysteine-type endopeptidase activity
2.
obsolete ubiquitin thiolesterase activity
- Biological Process
-
1.
ubiquitin-dependent protein catabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR008974 |
TRAF-like |
InterPro |
|
PF12436 |
USP7 |
HMMPfam |
|
IPR002083 |
MATH |
InterPro |
|
IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
InterPro |
|
SSF54001 |
Cysteine proteinases |
superfamily |
|
IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
InterPro |
|
PTHR10420 |
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52439.1 |
putative ubiquitin-specific protease UBP12 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 2387
Identities = 1170/1170 (100%), Positives = 1170/1170 (100%), Gaps = 0/1170 (0%) |
NCBI |
Show Blast
|
| XP_001416361.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1577
Identities = 794/1129 (70%), Positives = 935/1129 (82%), Gaps = 12/1129 (1%) |
NCBI |
Show Blast
|
| ACJ04334.1 |
ubiquitin specific protease 12 [Nicotiana tabacum]
Evalue: 0.0 | Bitscore: 895
Identities = 524/1126 (46%), Positives = 704/1126 (62%), Gaps = 100/1126 (8%) |
NCBI |
Show Blast
|
| AAG42754.1 |
ubiquitin-specific protease 12 [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 894
Identities = 517/1123 (46%), Positives = 694/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| NP_850783.1 |
UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease
Evalue: 0.0 | Bitscore: 894
Identities = 518/1123 (46%), Positives = 695/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| NP_568171.1 |
UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 894
Identities = 518/1123 (46%), Positives = 695/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| BAB11409.1 |
ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 892
Identities = 517/1123 (46%), Positives = 693/1123 (61%), Gaps = 95/1123 (8%) |
NCBI |
Show Blast
|
| ABA98280.2 |
ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)]
Evalue: 0.0 | Bitscore: 892
Identities = 522/1120 (46%), Positives = 706/1120 (63%), Gaps = 89/1120 (7%) |
NCBI |
Show Blast
|
| NP_187797.3 |
UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 890
Identities = 513/1112 (46%), Positives = 697/1112 (62%), Gaps = 74/1112 (6%) |
NCBI |
Show Blast
|
| XP_001768627.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 890
Identities = 507/1121 (45%), Positives = 719/1121 (64%), Gaps = 78/1121 (6%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAE15076.1 |
unknown [environmental sequence]
Evalue: 2e-99 | Bitscore: 364
Identities = 186/275 (67%), Positives = 230/275 (83%), Gaps = 2/275 (0%) |
GOS |
Show Blast
|
| EAD46239.1 |
unknown [environmental sequence]
Evalue: 5e-78 | Bitscore: 292
Identities = 148/249 (59%), Positives = 180/249 (72%), Gaps = 5/249 (2%) |
GOS |
Show Blast
|
| EAD69837.1 |
unknown [environmental sequence]
Evalue: 8e-12 | Bitscore: 72
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%) |
GOS |
Show Blast
|
| EAG82512.1 |
unknown [environmental sequence]
Evalue: 4e-09 | Bitscore: 63
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 16/178 (8%) |
GOS |
Show Blast
|
| EAE35996.1 |
unknown [environmental sequence]
Evalue: 2e-08 | Bitscore: 61
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 45/244 (18%) |
GOS |
Show Blast
|
| EAD19004.1 |
unknown [environmental sequence]
Evalue: 1e-07 | Bitscore: 58
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 20/193 (10%) |
GOS |
Show Blast
|
| EAD79984.1 |
unknown [environmental sequence]
Evalue: 4e-07 | Bitscore: 57
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 49/251 (19%) |
GOS |
Show Blast
|
| EAJ65160.1 |
unknown [environmental sequence]
Evalue: 5e-07 | Bitscore: 57
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 19/160 (11%) |
GOS |
Show Blast
|
| EAE58290.1 |
unknown [environmental sequence]
Evalue: 2e-06 | Bitscore: 55
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 21/189 (11%) |
GOS |
Show Blast
|
| EAA95295.1 |
unknown [environmental sequence]
Evalue: 3e-06 | Bitscore: 54
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 21/175 (12%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52439.1 |
putative ubiquitin-specific protease UBP12 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 2387
Identities = 1170/1170 (100%), Positives = 1170/1170 (100%), Gaps = 0/1170 (0%) |
NCBI |
Show Blast
|
| XP_001416361.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1577
Identities = 794/1129 (70%), Positives = 935/1129 (82%), Gaps = 12/1129 (1%) |
NCBI |
Show Blast
|
| ACJ04334.1 |
ubiquitin specific protease 12 [Nicotiana tabacum]
Evalue: 0.0 | Bitscore: 895
Identities = 524/1126 (46%), Positives = 704/1126 (62%), Gaps = 100/1126 (8%) |
NCBI |
Show Blast
|
| AAG42754.1 |
ubiquitin-specific protease 12 [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 894
Identities = 517/1123 (46%), Positives = 694/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| NP_850783.1 |
UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); double-stranded DNA binding / ubiquitin thiolesterase/ ubiquitin-specific protease
Evalue: 0.0 | Bitscore: 894
Identities = 518/1123 (46%), Positives = 695/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| NP_568171.1 |
UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 894
Identities = 518/1123 (46%), Positives = 695/1123 (61%), Gaps = 96/1123 (8%) |
NCBI |
Show Blast
|
| BAB11409.1 |
ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 892
Identities = 517/1123 (46%), Positives = 693/1123 (61%), Gaps = 95/1123 (8%) |
NCBI |
Show Blast
|
| ABA98280.2 |
ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)]
Evalue: 0.0 | Bitscore: 892
Identities = 522/1120 (46%), Positives = 706/1120 (63%), Gaps = 89/1120 (7%) |
NCBI |
Show Blast
|
| NP_187797.3 |
UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana]
Evalue: 0.0 | Bitscore: 890
Identities = 513/1112 (46%), Positives = 697/1112 (62%), Gaps = 74/1112 (6%) |
NCBI |
Show Blast
|
| XP_001768627.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 890
Identities = 507/1121 (45%), Positives = 719/1121 (64%), Gaps = 78/1121 (6%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot04g02050 |
chrom04.0001 [301541..302729,302804..304869]
Evalue: 2e-23 | Bitscore: 106
Identities = 96/318 (30%), Positives = 144/318 (45%), Gaps = 39/318 (12%) |
Self |
Show Blast
|
| Ot11g00020 |
chrom11.0001 [3388..5454]
Evalue: 1e-22 | Bitscore: 104
Identities = 101/323 (31%), Positives = 139/323 (43%), Gaps = 48/323 (14%) |
Self |
Show Blast
|
| Ot13g00010 |
chrom13.0001 [652..1812]
Evalue: 1e-10 | Bitscore: 64
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 10/103 (9%) |
Self |
Show Blast
|
| Ot11g02170 |
chrom11.0001 [369884..371626]
Evalue: 6e-09 | Bitscore: 58
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 23/209 (11%) |
Self |
Show Blast
|
| Ot01g01550 |
chrom01.0001 [228044..228293,228626..229940,229978..229993, 230036..230085,230127..230316,230384..232249]
Evalue: 2e-08 | Bitscore: 57
Identities = 63/268 (23%), Positives = 100/268 (37%), Gaps = 72/268 (26%) |
Self |
Show Blast
|
| Ot01g03000 |
chrom01.0001 [467503..467517,467759..468093,468128..468481, 468545..468857,468912..471874,471914..473171,
Evalue: 4e-08 | Bitscore: 56
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 8/107 (7%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9FPT1 |
Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2
Evalue: 0.0 | Bitscore: 864
Identities = 510/1119 (45%), Positives = 685/1119 (61%), Gaps = 88/1119 (7%) |
SwissP |
Show Blast
|
| Q84WU2 |
Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1
Evalue: 0.0 | Bitscore: 860
Identities = 506/1112 (45%), Positives = 688/1112 (61%), Gaps = 74/1112 (6%) |
SwissP |
Show Blast
|
| Q6A4J8 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1
Evalue: 1e-133 | Bitscore: 476
Identities = 345/1035 (33%), Positives = 538/1035 (51%), Gaps = 109/1035 (10%) |
SwissP |
Show Blast
|
| Q93009 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2
Evalue: 1e-132 | Bitscore: 475
Identities = 345/1035 (33%), Positives = 537/1035 (51%), Gaps = 109/1035 (10%) |
SwissP |
Show Blast
|
| Q4VSI4 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1
Evalue: 1e-132 | Bitscore: 474
Identities = 344/1035 (33%), Positives = 536/1035 (51%), Gaps = 109/1035 (10%) |
SwissP |
Show Blast
|
| Q6U7I1 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1
Evalue: 1e-132 | Bitscore: 474
Identities = 346/1034 (33%), Positives = 534/1034 (51%), Gaps = 107/1034 (10%) |
SwissP |
Show Blast
|
| Q09879 |
Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe GN=ubp5 PE=2 SV=3
Evalue: 1e-123 | Bitscore: 444
Identities = 322/1058 (30%), Positives = 538/1058 (50%), Gaps = 101/1058 (9%) |
SwissP |
Show Blast
|
| Q9VYQ8 |
Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1
Evalue: 1e-119 | Bitscore: 431
Identities = 338/1046 (32%), Positives = 521/1046 (49%), Gaps = 133/1046 (12%) |
SwissP |
Show Blast
|
| Q9UTT1 |
Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe GN=ubp21 PE=2 SV=2
Evalue: 1e-117 | Bitscore: 422
Identities = 335/1100 (30%), Positives = 540/1100 (49%), Gaps = 112/1100 (10%) |
SwissP |
Show Blast
|
| P50101 |
Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces cerevisiae GN=UBP15 PE=1 SV=1
Evalue: 3e-94 | Bitscore: 347
Identities = 225/639 (35%), Positives = 344/639 (53%), Gaps = 67/639 (10%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G06600.2 |
| Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin-specific protease | chr5:2019546-2027835
Evalue: 0.0 | Bitscore: 864
Identities = 510/1119 (45%), Positives = 685/1119 (61%), Gaps = 88/1119 (7%) |
Tair |
Show Blast
|
| AT5G06600.1 |
| Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin-specific protease | chr5:2019546-2027835
Evalue: 0.0 | Bitscore: 864
Identities = 510/1119 (45%), Positives = 685/1119 (61%), Gaps = 88/1119 (7%) |
Tair |
Show Blast
|
| AT3G11910.1 |
| Symbols: | ubiquitin-specific protease, putative | chr3:3761764-3770296 REVERSE
Evalue: 0.0 | Bitscore: 860
Identities = 506/1112 (45%), Positives = 688/1112 (61%), Gaps = 74/1112 (6%) |
Tair |
Show Blast
|
| AT5G06600.3 |
| Symbols: UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) | chr5:2020683-2027835 REVERSE
Evalue: 0.0 | Bitscore: 805
Identities = 466/984 (47%), Positives = 622/984 (63%), Gaps = 81/984 (8%) |
Tair |
Show Blast
|
| AT3G49600.1 |
| Symbols: UBP26 | UBP26 (ubiquitin-specific protease 26); ubiquitin-specific protease | chr3:18391927-18397647
Evalue: 9e-29 | Bitscore: 126
Identities = 107/359 (29%), Positives = 171/359 (47%), Gaps = 35/359 (9%) |
Tair |
Show Blast
|
| AT2G22310.1 |
| Symbols: UBP4, ATUBP4 | ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease | chr2:9483813-9485905
Evalue: 3e-20 | Bitscore: 98
Identities = 92/345 (26%), Positives = 144/345 (41%), Gaps = 52/345 (15%) |
Tair |
Show Blast
|
| AT4G39910.1 |
| Symbols: UBP3, ATUBP3 | ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease | chr4:18511852-18514133
Evalue: 3e-19 | Bitscore: 94
Identities = 96/350 (27%), Positives = 148/350 (42%), Gaps = 57/350 (16%) |
Tair |
Show Blast
|
| AT5G46740.1 |
| Symbols: UBP21 | UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21); ubiquitin-specific protease | chr5:18982637-18985719
Evalue: 3e-17 | Bitscore: 87
Identities = 84/307 (27%), Positives = 135/307 (43%), Gaps = 30/307 (9%) |
Tair |
Show Blast
|
| AT1G17110.1 |
| Symbols: UBP15 | UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease | chr1:5845809-5849882
Evalue: 4e-17 | Bitscore: 87
Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 46/306 (15%) |
Tair |
Show Blast
|
| AT3G14400.1 |
| Symbols: UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease | chr3:4811960-4815217
Evalue: 3e-16 | Bitscore: 84
Identities = 78/317 (24%), Positives = 136/317 (42%), Gaps = 37/317 (11%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
