- Gene ID
- Ot02g04710
- Locus
- Ot02g04710
- Functional Description
- Hda2 histone deacetylase (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 21h32
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Hda2 histone deacetylase (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR003084 |
Histone deacetylase |
InterPro |
|
SSF52768 |
Arginase/deacetylase |
superfamily |
|
IPR000286 |
Histone deacetylase superfamily |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52346.2 |
Hda2 histone deacetylase (IC) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1014
Identities = 482/482 (100%), Positives = 482/482 (100%), Gaps = 0/482 (0%) |
NCBI |
Show Blast
|
| XP_001416418.1 |
histone deacetylase [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 814
Identities = 392/489 (80%), Positives = 423/489 (86%), Gaps = 16/489 (3%) |
NCBI |
Show Blast
|
| EEH59365.1 |
histone deacetylase [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 690
Identities = 335/465 (72%), Positives = 381/465 (81%), Gaps = 18/465 (3%) |
NCBI |
Show Blast
|
| XP_002500502.1 |
histone deacetylase [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 683
Identities = 318/397 (80%), Positives = 352/397 (88%), Gaps = 5/397 (1%) |
NCBI |
Show Blast
|
| XP_001777547.1 |
class I RPD3 type histone deacetylase protein [Physcomitrella patens subsp. patens]
Evalue: 2e-167 | Bitscore: 592
Identities = 267/378 (70%), Positives = 322/378 (85%), Gaps = 0/378 (0%) |
NCBI |
Show Blast
|
| AT4G38130.1 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19); histone deacetylase | chr4:17896487-17899051 REVERSE
Evalue: 1e-169 | Bitscore: 590
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
Tair |
Show Blast
|
| O22446 |
Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Evalue: 1e-168 | Bitscore: 590
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
SwissP |
Show Blast
|
| ACT33454.1 |
histone deacetylase 1 [Brassica rapa subsp. pekinensis]
Evalue: 2e-166 | Bitscore: 589
Identities = 275/399 (68%), Positives = 332/399 (83%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| AT4G38130.2 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19) | chr4:17896657-17899051 REVERSE
Evalue: 1e-168 | Bitscore: 588
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
Tair |
Show Blast
|
| AAG28474.1 |
putative histone deacetylase [Arabidopsis thaliana]
Evalue: 4e-166 | Bitscore: 588
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ89831.1 |
unknown [environmental sequence]
Evalue: 1e-139 | Bitscore: 493
Identities = 232/383 (60%), Positives = 297/383 (77%), Gaps = 6/383 (1%) |
GOS |
Show Blast
|
| EAE31776.1 |
unknown [environmental sequence]
Evalue: 2e-90 | Bitscore: 332
Identities = 152/188 (80%), Positives = 170/188 (90%) |
GOS |
Show Blast
|
| EAE65353.1 |
unknown [environmental sequence]
Evalue: 8e-84 | Bitscore: 310
Identities = 145/243 (59%), Positives = 194/243 (79%), Gaps = 2/243 (0%) |
GOS |
Show Blast
|
| EAD82420.1 |
unknown [environmental sequence]
Evalue: 8e-79 | Bitscore: 294
Identities = 132/197 (67%), Positives = 164/197 (83%) |
GOS |
Show Blast
|
| EAB67053.1 |
unknown [environmental sequence]
Evalue: 1e-47 | Bitscore: 190
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%) |
GOS |
Show Blast
|
| EAH75636.1 |
unknown [environmental sequence]
Evalue: 4e-36 | Bitscore: 152
Identities = 103/296 (34%), Positives = 149/296 (50%), Gaps = 19/296 (6%) |
GOS |
Show Blast
|
| EAH43996.1 |
unknown [environmental sequence]
Evalue: 4e-34 | Bitscore: 145
Identities = 67/86 (77%), Positives = 71/86 (82%) |
GOS |
Show Blast
|
| EAH21922.1 |
unknown [environmental sequence]
Evalue: 4e-32 | Bitscore: 139
Identities = 80/288 (27%), Positives = 151/288 (52%), Gaps = 20/288 (6%) |
GOS |
Show Blast
|
| EAF81504.1 |
unknown [environmental sequence]
Evalue: 1e-30 | Bitscore: 134
Identities = 83/233 (35%), Positives = 120/233 (51%), Gaps = 6/233 (2%) |
GOS |
Show Blast
|
| EAJ89187.1 |
unknown [environmental sequence]
Evalue: 2e-30 | Bitscore: 133
Identities = 78/263 (29%), Positives = 135/263 (51%), Gaps = 8/263 (3%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL52346.2 |
Hda2 histone deacetylase (IC) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1014
Identities = 482/482 (100%), Positives = 482/482 (100%), Gaps = 0/482 (0%) |
NCBI |
Show Blast
|
| XP_001416418.1 |
histone deacetylase [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 814
Identities = 392/489 (80%), Positives = 423/489 (86%), Gaps = 16/489 (3%) |
NCBI |
Show Blast
|
| EEH59365.1 |
histone deacetylase [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 690
Identities = 335/465 (72%), Positives = 381/465 (81%), Gaps = 18/465 (3%) |
NCBI |
Show Blast
|
| XP_002500502.1 |
histone deacetylase [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 683
Identities = 318/397 (80%), Positives = 352/397 (88%), Gaps = 5/397 (1%) |
NCBI |
Show Blast
|
| XP_001777547.1 |
class I RPD3 type histone deacetylase protein [Physcomitrella patens subsp. patens]
Evalue: 2e-167 | Bitscore: 592
Identities = 267/378 (70%), Positives = 322/378 (85%), Gaps = 0/378 (0%) |
NCBI |
Show Blast
|
| ACT33454.1 |
histone deacetylase 1 [Brassica rapa subsp. pekinensis]
Evalue: 2e-166 | Bitscore: 589
Identities = 275/399 (68%), Positives = 332/399 (83%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| AAG28474.1 |
putative histone deacetylase [Arabidopsis thaliana]
Evalue: 4e-166 | Bitscore: 588
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| NP_195526.1 |
HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding [Arabidopsis thaliana]
Evalue: 5e-166 | Bitscore: 588
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| NP_001078511.1 |
HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding [Arabidopsis thaliana]
Evalue: 2e-165 | Bitscore: 587
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
NCBI |
Show Blast
|
| XP_002283371.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-165 | Bitscore: 585
Identities = 277/412 (67%), Positives = 337/412 (81%), Gaps = 3/412 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot02g03310 |
chrom02.0001 [339758..339858,339904..339981,340022..340162,
Evalue: 5e-35 | Bitscore: 144
Identities = 73/133 (54%), Positives = 90/133 (67%), Gaps = 29/133 (21%) |
Self |
Show Blast
|
| Ot07g00970 |
chrom07.0001 [144124..145330,145377..145633]
Evalue: 1e-20 | Bitscore: 96
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 16/290 (5%) |
Self |
Show Blast
|
| Ot16g02010 |
chrom16.0001 [282156..283107,283216..284513]
Evalue: 5e-17 | Bitscore: 84
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 28/205 (13%) |
Self |
Show Blast
|
| Ot09g00170 |
chrom09.0001 [31185..32354]
Evalue: 1e-16 | Bitscore: 82
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 2/127 (1%) |
Self |
Show Blast
|
| Ot16g01260 |
chrom16.0001 [175614..176669] incomplete
Evalue: 8e-15 | Bitscore: 76
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 20/180 (11%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| O22446 |
Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Evalue: 1e-168 | Bitscore: 590
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
SwissP |
Show Blast
|
| O09106 |
Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Evalue: 1e-165 | Bitscore: 580
Identities = 259/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| Q4QQW4 |
Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Evalue: 1e-164 | Bitscore: 580
Identities = 259/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| Q32PJ8 |
Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Evalue: 1e-164 | Bitscore: 580
Identities = 259/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| Q5RAG0 |
Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Evalue: 1e-164 | Bitscore: 579
Identities = 258/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| Q13547 |
Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Evalue: 1e-164 | Bitscore: 579
Identities = 258/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| O42227 |
Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1
Evalue: 1e-163 | Bitscore: 575
Identities = 258/378 (68%), Positives = 314/378 (83%) |
SwissP |
Show Blast
|
| P56517 |
Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Evalue: 1e-163 | Bitscore: 574
Identities = 257/378 (67%), Positives = 312/378 (82%) |
SwissP |
Show Blast
|
| Q91695 |
Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1
Evalue: 1e-156 | Bitscore: 553
Identities = 260/372 (69%), Positives = 311/372 (83%) |
SwissP |
Show Blast
|
| Q55FN5 |
Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1
Evalue: 1e-156 | Bitscore: 553
Identities = 246/377 (65%), Positives = 312/377 (82%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G38130.1 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19); histone deacetylase | chr4:17896487-17899051 REVERSE
Evalue: 1e-169 | Bitscore: 590
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
Tair |
Show Blast
|
| AT4G38130.2 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19) | chr4:17896657-17899051 REVERSE
Evalue: 1e-168 | Bitscore: 588
Identities = 275/399 (68%), Positives = 331/399 (82%), Gaps = 3/399 (0%) |
Tair |
Show Blast
|
| AT5G63110.1 |
| Symbols: AXE1, ATHDA6, RTS1, RPD3B, SIL1, HDA6 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase |
Evalue: 1e-151 | Bitscore: 532
Identities = 246/401 (61%), Positives = 314/401 (78%), Gaps = 8/401 (1%) |
Tair |
Show Blast
|
| AT3G44680.1 |
| Symbols: HDA09, HDA9 | HDA9 (histone deacetylase 9); histone deacetylase | chr3:16237756-16240739 REVERSE
Evalue: 1e-140 | Bitscore: 494
Identities = 223/379 (58%), Positives = 291/379 (76%), Gaps = 1/379 (0%) |
Tair |
Show Blast
|
| AT5G35600.1 |
| Symbols: HDA7 | HDA7 (HISTONE DEACETYLASE7); histone deacetylase | chr5:13787351-13788942 REVERSE
Evalue: 1e-120 | Bitscore: 428
Identities = 210/402 (52%), Positives = 277/402 (68%), Gaps = 10/402 (2%) |
Tair |
Show Blast
|
| AT3G44490.1 |
| Symbols: HDA17 | HDA17 (histone deacetylase 17); histone deacetylase | chr3:16108466-16109373 FORWARD
Evalue: 3e-26 | Bitscore: 116
Identities = 52/112 (46%), Positives = 73/112 (65%) |
Tair |
Show Blast
|
| AT1G08460.1 |
| Symbols: HDA8, HDA08 | HDA08 (histone deacetylase 8); histone deacetylase | chr1:2672524-2674466 FORWARD
Evalue: 1e-25 | Bitscore: 114
Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 24/300 (8%) |
Tair |
Show Blast
|
| AT3G18520.1 |
| Symbols: HDA15 | HDA15 (HISTONE DEACETYLASE 15); histone deacetylase | chr3:6361611-6365373 FORWARD
Evalue: 1e-21 | Bitscore: 101
Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 10/250 (4%) |
Tair |
Show Blast
|
| AT5G61060.1 |
| Symbols: HDA5, HDA05 | HDA05 (HISTONE DEACETYLASE5); histone deacetylase | chr5:24584363-24588143 REVERSE
Evalue: 1e-21 | Bitscore: 101
Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 20/319 (6%) |
Tair |
Show Blast
|
| AT3G18520.2 |
| Symbols: HDA15 | HDA15 (HISTONE DEACETYLASE 15); histone deacetylase | chr3:6361611-6365405 FORWARD
Evalue: 3e-21 | Bitscore: 100
Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 5/175 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01877 |
Support Model | Y |
More Info |
| Comment | EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 527005..527853 |
Strand - |
| EST ID | OtEST03007 |
Support Model | Y |
More Info |
| Comment | EST is mapped on the opposite strand of the predicted model |
| Mapping Location | 527005..527853 |
Strand - |
|
