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Ostreococcus tauri


Gene ID
Ot02g04220
Locus
Ot02g04220
Functional Description
If4E eukaryotic translation initiation factor 4E (IC)
Gene Type
protein-coding gene
Contig
chrom02
Last Modified On
08 March 2010 21h25
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
If4E eukaryotic translation initiation factor 4E (IC)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cytoplasm

Molecular Function
1.
RNA binding

2.
translation initiation factor activity

Biological Process
1.
translational initiation

Protein Domains 


Domain IDDescriptionDatabase
IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) InterPro
IPR019770 Eukaryotic translation initiation factor 4E (eIF-4E), conserved site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
P29557 Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3
Evalue: 5e-33 | Bitscore: 139
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 6/129 (4%)
SwissP
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P48599 Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1
Evalue: 8e-33 | Bitscore: 138
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 6/129 (4%)
SwissP
Show Blast
O81481 Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1
Evalue: 9e-33 | Bitscore: 138
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 6/129 (4%)
SwissP
Show Blast
AT4G18040.1 | Symbols: EIF4E, LSP1, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E, LOSS-OF-SUSCEPTIBILITY
Evalue: 2e-33 | Bitscore: 137
Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 6/127 (4%)
Tair
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O23252 Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1
Evalue: 2e-32 | Bitscore: 137
Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 6/127 (4%)
SwissP
Show Blast
Q9C7P2 Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2
Evalue: 8e-31 | Bitscore: 132
Identities = 63/128 (49%), Positives = 89/128 (69%), Gaps = 6/128 (4%)
SwissP
Show Blast
AT1G29590.1 | Symbols: | eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding
Evalue: 2e-31 | Bitscore: 130
Identities = 63/128 (49%), Positives = 89/128 (69%), Gaps = 6/128 (4%)
Tair
Show Blast
AT1G29550.1 | Symbols: | eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding
Evalue: 4e-31 | Bitscore: 129
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 6/128 (4%)
Tair
Show Blast
Q9C7P6 Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1
Evalue: 4e-30 | Bitscore: 129
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 6/128 (4%)
SwissP
Show Blast
Q03389 Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1
Evalue: 3e-27 | Bitscore: 120
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
SwissP
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
Ot02g04220
Redo Blast
CDS Length
390 nucleotides
CDS Sequence

Protein 

Locus ID
Ot02g04220
Redo Blast
Protein Length
130 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDOtEST00369 Support ModelY More Info