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Ostreococcus tauri


Gene ID
Ot02g03310
Locus
Ot02g03310
Functional Description
Histone deacetylase complex, catalytic component RPD3 (ISS)
Gene Type
protein-coding gene
Contig
chrom02
Last Modified On
08 March 2010 21h10
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Histone deacetylase complex, catalytic component RPD3 (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR003084 Histone deacetylase InterPro
SSF52768 Arginase/deacetylase superfamily
IPR000286 Histone deacetylase superfamily InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL52208.1 histone deacetylase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863
Identities = 413/413 (100%), Positives = 413/413 (100%), Gaps = 0/413 (0%)
NCBI
Show Blast
XP_001416403.1 histone deacetylase, probable [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 759
Identities = 356/422 (84%), Positives = 386/422 (91%), Gaps = 9/422 (2%)
NCBI
Show Blast
EAJ89831.1 unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 733
Identities = 339/414 (81%), Positives = 375/414 (90%), Gaps = 9/414 (2%)
GOS
Show Blast
EEH56104.1 histone deacetylase [Micromonas pusilla CCMP1545]
Evalue: 2e-171 | Bitscore: 605
Identities = 283/420 (67%), Positives = 335/420 (79%), Gaps = 9/420 (2%)
NCBI
Show Blast
XP_002504208.1 histone deacetylase [Micromonas sp. RCC299]
Evalue: 2e-170 | Bitscore: 602
Identities = 282/420 (67%), Positives = 336/420 (80%), Gaps = 9/420 (2%)
NCBI
Show Blast
XP_001774667.1 class I RPD3 type histone deacetylase protein [Physcomitrella patens subsp. patens]
Evalue: 2e-146 | Bitscore: 523
Identities = 242/403 (60%), Positives = 306/403 (75%), Gaps = 11/403 (2%)
NCBI
Show Blast
XP_002300554.1 histone deacetylase [Populus trichocarpa]
Evalue: 3e-146 | Bitscore: 522
Identities = 244/403 (60%), Positives = 304/403 (75%), Gaps = 12/403 (2%)
NCBI
Show Blast
XP_002446401.1 hypothetical protein SORBIDRAFT_06g015420 [Sorghum bicolor]
Evalue: 1e-145 | Bitscore: 520
Identities = 248/421 (58%), Positives = 314/421 (74%), Gaps = 14/421 (3%)
NCBI
Show Blast
CAH66503.1 H0321H01.12 [Oryza sativa (indica cultivar-group)]
Evalue: 1e-145 | Bitscore: 520
Identities = 249/421 (59%), Positives = 316/421 (75%), Gaps = 14/421 (3%)
NCBI
Show Blast
ACD50313.1 histone deacetylase RPD3/HDA1 class I isoform 1 [Hordeum vulgare]
Evalue: 2e-145 | Bitscore: 519
Identities = 242/403 (60%), Positives = 305/403 (75%), Gaps = 12/403 (2%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


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Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
Ot02g03310
Redo Blast
CDS Length
1242 nucleotides
CDS Sequence

Protein 

Locus ID
Ot02g03310
Redo Blast
Protein Length
414 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a