- Gene ID
- Ot02g03310
- Locus
- Ot02g03310
- Functional Description
- Histone deacetylase complex, catalytic component RPD3 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom02
- Last Modified On
- 08 March 2010 21h10
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Histone deacetylase complex, catalytic component RPD3 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Domain ID | Description | Database |
IPR003084 |
Histone deacetylase |
InterPro |
SSF52768 |
Arginase/deacetylase |
superfamily |
IPR000286 |
Histone deacetylase superfamily |
InterPro |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
CAL52208.1 |
histone deacetylase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863 Identities = 413/413 (100%), Positives = 413/413 (100%), Gaps = 0/413 (0%) |
NCBI |
Show Blast
|
XP_001416403.1 |
histone deacetylase, probable [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 759 Identities = 356/422 (84%), Positives = 386/422 (91%), Gaps = 9/422 (2%) |
NCBI |
Show Blast
|
EAJ89831.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 733 Identities = 339/414 (81%), Positives = 375/414 (90%), Gaps = 9/414 (2%) |
GOS |
Show Blast
|
EEH56104.1 |
histone deacetylase [Micromonas pusilla CCMP1545]
Evalue: 2e-171 | Bitscore: 605 Identities = 283/420 (67%), Positives = 335/420 (79%), Gaps = 9/420 (2%) |
NCBI |
Show Blast
|
XP_002504208.1 |
histone deacetylase [Micromonas sp. RCC299]
Evalue: 2e-170 | Bitscore: 602 Identities = 282/420 (67%), Positives = 336/420 (80%), Gaps = 9/420 (2%) |
NCBI |
Show Blast
|
XP_001774667.1 |
class I RPD3 type histone deacetylase protein [Physcomitrella patens subsp. patens]
Evalue: 2e-146 | Bitscore: 523 Identities = 242/403 (60%), Positives = 306/403 (75%), Gaps = 11/403 (2%) |
NCBI |
Show Blast
|
XP_002300554.1 |
histone deacetylase [Populus trichocarpa]
Evalue: 3e-146 | Bitscore: 522 Identities = 244/403 (60%), Positives = 304/403 (75%), Gaps = 12/403 (2%) |
NCBI |
Show Blast
|
XP_002446401.1 |
hypothetical protein SORBIDRAFT_06g015420 [Sorghum bicolor]
Evalue: 1e-145 | Bitscore: 520 Identities = 248/421 (58%), Positives = 314/421 (74%), Gaps = 14/421 (3%) |
NCBI |
Show Blast
|
CAH66503.1 |
H0321H01.12 [Oryza sativa (indica cultivar-group)]
Evalue: 1e-145 | Bitscore: 520 Identities = 249/421 (59%), Positives = 316/421 (75%), Gaps = 14/421 (3%) |
NCBI |
Show Blast
|
ACD50313.1 |
histone deacetylase RPD3/HDA1 class I isoform 1 [Hordeum vulgare]
Evalue: 2e-145 | Bitscore: 519 Identities = 242/403 (60%), Positives = 305/403 (75%), Gaps = 12/403 (2%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
EAJ89831.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 733 Identities = 339/414 (81%), Positives = 375/414 (90%), Gaps = 9/414 (2%) |
GOS |
Show Blast
|
EAD82420.1 |
unknown [environmental sequence]
Evalue: 1e-100 | Bitscore: 363 Identities = 169/196 (86%), Positives = 181/196 (92%), Gaps = 9/196 (4%) |
GOS |
Show Blast
|
EAE65353.1 |
unknown [environmental sequence]
Evalue: 5e-72 | Bitscore: 271 Identities = 131/237 (55%), Positives = 177/237 (74%), Gaps = 10/237 (4%) |
GOS |
Show Blast
|
EAE31776.1 |
unknown [environmental sequence]
Evalue: 2e-47 | Bitscore: 189 Identities = 94/192 (48%), Positives = 132/192 (68%), Gaps = 4/192 (2%) |
GOS |
Show Blast
|
EAB67053.1 |
unknown [environmental sequence]
Evalue: 5e-38 | Bitscore: 158 Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 11/127 (8%) |
GOS |
Show Blast
|
EAH75636.1 |
unknown [environmental sequence]
Evalue: 5e-29 | Bitscore: 128 Identities = 100/307 (32%), Positives = 142/307 (46%), Gaps = 23/307 (7%) |
GOS |
Show Blast
|
EAC78761.1 |
unknown [environmental sequence]
Evalue: 2e-24 | Bitscore: 112 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 8/174 (4%) |
GOS |
Show Blast
|
EAF81504.1 |
unknown [environmental sequence]
Evalue: 1e-23 | Bitscore: 110 Identities = 80/231 (34%), Positives = 108/231 (46%), Gaps = 12/231 (5%) |
GOS |
Show Blast
|
EAH28194.1 |
unknown [environmental sequence]
Evalue: 4e-23 | Bitscore: 108 Identities = 67/180 (37%), Positives = 91/180 (50%), Gaps = 10/180 (5%) |
GOS |
Show Blast
|
EAD59924.1 |
unknown [environmental sequence]
Evalue: 2e-21 | Bitscore: 103 Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 7/185 (3%) |
GOS |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
CAL52208.1 |
histone deacetylase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863 Identities = 413/413 (100%), Positives = 413/413 (100%), Gaps = 0/413 (0%) |
NCBI |
Show Blast
|
XP_001416403.1 |
histone deacetylase, probable [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 759 Identities = 356/422 (84%), Positives = 386/422 (91%), Gaps = 9/422 (2%) |
NCBI |
Show Blast
|
EEH56104.1 |
histone deacetylase [Micromonas pusilla CCMP1545]
Evalue: 2e-171 | Bitscore: 605 Identities = 283/420 (67%), Positives = 335/420 (79%), Gaps = 9/420 (2%) |
NCBI |
Show Blast
|
XP_002504208.1 |
histone deacetylase [Micromonas sp. RCC299]
Evalue: 2e-170 | Bitscore: 602 Identities = 282/420 (67%), Positives = 336/420 (80%), Gaps = 9/420 (2%) |
NCBI |
Show Blast
|
XP_001774667.1 |
class I RPD3 type histone deacetylase protein [Physcomitrella patens subsp. patens]
Evalue: 2e-146 | Bitscore: 523 Identities = 242/403 (60%), Positives = 306/403 (75%), Gaps = 11/403 (2%) |
NCBI |
Show Blast
|
XP_002300554.1 |
histone deacetylase [Populus trichocarpa]
Evalue: 3e-146 | Bitscore: 522 Identities = 244/403 (60%), Positives = 304/403 (75%), Gaps = 12/403 (2%) |
NCBI |
Show Blast
|
XP_002446401.1 |
hypothetical protein SORBIDRAFT_06g015420 [Sorghum bicolor]
Evalue: 1e-145 | Bitscore: 520 Identities = 248/421 (58%), Positives = 314/421 (74%), Gaps = 14/421 (3%) |
NCBI |
Show Blast
|
CAH66503.1 |
H0321H01.12 [Oryza sativa (indica cultivar-group)]
Evalue: 1e-145 | Bitscore: 520 Identities = 249/421 (59%), Positives = 316/421 (75%), Gaps = 14/421 (3%) |
NCBI |
Show Blast
|
ACD50313.1 |
histone deacetylase RPD3/HDA1 class I isoform 1 [Hordeum vulgare]
Evalue: 2e-145 | Bitscore: 519 Identities = 242/403 (60%), Positives = 305/403 (75%), Gaps = 12/403 (2%) |
NCBI |
Show Blast
|
XP_002266492.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 6e-145 | Bitscore: 518 Identities = 248/422 (58%), Positives = 307/422 (72%), Gaps = 13/422 (3%) |
NCBI |
Show Blast
|
No hits found against database O.RCC809 with an e-value better than 1e-3. |
No hits found against database O.luci with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Ot02g04710 |
chrom02.0001 [525709..525713,526228..526291,526341..526433,
Evalue: 1e-130 | Bitscore: 458 Identities = 227/395 (57%), Positives = 288/395 (72%), Gaps = 18/395 (4%) |
Self |
Show Blast
|
Ot07g00970 |
chrom07.0001 [144124..145330,145377..145633]
Evalue: 2e-21 | Bitscore: 98 Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 19/261 (7%) |
Self |
Show Blast
|
Ot09g00170 |
chrom09.0001 [31185..32354]
Evalue: 9e-15 | Bitscore: 76 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 3/121 (2%) |
Self |
Show Blast
|
Ot16g02010 |
chrom16.0001 [282156..283107,283216..284513]
Evalue: 3e-14 | Bitscore: 74 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 30/203 (14%) |
Self |
Show Blast
|
Ot16g01260 |
chrom16.0001 [175614..176669] incomplete
Evalue: 1e-07 | Bitscore: 52 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
Q8H0W2 |
Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1
Evalue: 1e-143 | Bitscore: 509 Identities = 243/423 (57%), Positives = 306/423 (72%), Gaps = 15/423 (3%) |
SwissP |
Show Blast
|
Q4QQW4 |
Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Evalue: 1e-132 | Bitscore: 472 Identities = 221/382 (57%), Positives = 285/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
O09106 |
Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Evalue: 1e-132 | Bitscore: 472 Identities = 221/382 (57%), Positives = 285/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
Q5RAG0 |
Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Evalue: 1e-132 | Bitscore: 471 Identities = 220/382 (57%), Positives = 285/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
Q32PJ8 |
Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Evalue: 1e-132 | Bitscore: 471 Identities = 221/382 (57%), Positives = 285/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
Q13547 |
Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Evalue: 1e-132 | Bitscore: 471 Identities = 220/382 (57%), Positives = 285/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
P56517 |
Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Evalue: 1e-131 | Bitscore: 468 Identities = 220/382 (57%), Positives = 283/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
O22446 |
Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Evalue: 1e-130 | Bitscore: 466 Identities = 226/401 (56%), Positives = 295/401 (73%), Gaps = 13/401 (3%) |
SwissP |
Show Blast
|
O42227 |
Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1
Evalue: 1e-130 | Bitscore: 466 Identities = 217/382 (56%), Positives = 286/382 (74%), Gaps = 13/382 (3%) |
SwissP |
Show Blast
|
P56518 |
Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1
Evalue: 1e-128 | Bitscore: 459 Identities = 228/421 (54%), Positives = 303/421 (71%), Gaps = 16/421 (3%) |
SwissP |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
AT3G44680.1 |
| Symbols: HDA09, HDA9 | HDA9 (histone deacetylase 9); histone deacetylase | chr3:16237756-16240739 REVERSE
Evalue: 1e-144 | Bitscore: 509 Identities = 243/423 (57%), Positives = 306/423 (72%), Gaps = 15/423 (3%) |
Tair |
Show Blast
|
AT4G38130.1 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19); histone deacetylase | chr4:17896487-17899051 REVERSE
Evalue: 1e-131 | Bitscore: 466 Identities = 226/401 (56%), Positives = 295/401 (73%), Gaps = 13/401 (3%) |
Tair |
Show Blast
|
AT4G38130.2 |
| Symbols: HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE19) | chr4:17896657-17899051 REVERSE
Evalue: 1e-131 | Bitscore: 464 Identities = 226/401 (56%), Positives = 295/401 (73%), Gaps = 13/401 (3%) |
Tair |
Show Blast
|
AT5G63110.1 |
| Symbols: AXE1, ATHDA6, RTS1, RPD3B, SIL1, HDA6 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase |
Evalue: 1e-122 | Bitscore: 436 Identities = 210/397 (52%), Positives = 280/397 (70%), Gaps = 15/397 (3%) |
Tair |
Show Blast
|
AT5G35600.1 |
| Symbols: HDA7 | HDA7 (HISTONE DEACETYLASE7); histone deacetylase | chr5:13787351-13788942 REVERSE
Evalue: 6e-98 | Bitscore: 354 Identities = 188/402 (46%), Positives = 250/402 (62%), Gaps = 23/402 (5%) |
Tair |
Show Blast
|
AT3G44490.1 |
| Symbols: HDA17 | HDA17 (histone deacetylase 17); histone deacetylase | chr3:16108466-16109373 FORWARD
Evalue: 6e-30 | Bitscore: 128 Identities = 70/153 (45%), Positives = 92/153 (60%), Gaps = 6/153 (3%) |
Tair |
Show Blast
|
AT3G44660.1 |
| Symbols: HDA10 | HDA10 (histone deacetylase 10) | chr3:16225951-16226772 REVERSE
Evalue: 2e-21 | Bitscore: 100 Identities = 61/153 (39%), Positives = 82/153 (53%), Gaps = 22/153 (14%) |
Tair |
Show Blast
|
AT3G18520.1 |
| Symbols: HDA15 | HDA15 (HISTONE DEACETYLASE 15); histone deacetylase | chr3:6361611-6365373 FORWARD
Evalue: 3e-21 | Bitscore: 99 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 4/188 (2%) |
Tair |
Show Blast
|
AT3G18520.2 |
| Symbols: HDA15 | HDA15 (HISTONE DEACETYLASE 15); histone deacetylase | chr3:6361611-6365405 FORWARD
Evalue: 4e-21 | Bitscore: 99 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 4/188 (2%) |
Tair |
Show Blast
|
AT1G08460.1 |
| Symbols: HDA8, HDA08 | HDA08 (histone deacetylase 8); histone deacetylase | chr1:2672524-2674466 FORWARD
Evalue: 2e-16 | Bitscore: 83 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 12/179 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|