- Gene ID
- Ot01g01830
- Locus
- Ot01g01830
- Functional Description
- Vesicle coat protein clathrin, heavy chain (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom01
- Last Modified On
- 08 March 2010 19h22
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Vesicle coat protein clathrin, heavy chain (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
clathrin coat of trans-Golgi network vesicle
2.
clathrin coat of coated pit
- Molecular Function
-
1.
structural molecule activity
2.
protein binding
- Biological Process
-
1.
intracellular protein transport
2.
vesicle-mediated transport
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR016025 |
Clathrin, heavy chain, linker/propeller domain |
InterPro |
|
IPR016341 |
Clathrin, heavy chain |
InterPro |
|
IPR011990 |
Tetratricopeptide-like helical |
InterPro |
|
PF00637 |
Clathrin |
HMMPfam |
|
IPR001473 |
Clathrin, heavy chain, propeller, N-terminal |
InterPro |
|
IPR015348 |
Clathrin, heavy chain, linker, core motif |
InterPro |
|
IPR016024 |
Armadillo-type fold |
InterPro |
|
PTHR10292 |
CLATHRIN HEAVY CHAIN |
HMMPanther |
|
IPR000547 |
Clathrin, heavy chain/VPS, 7-fold repeat |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50094.1 |
clathrin heavy chain, putative (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3162
Identities = 1553/1553 (100%), Positives = 1553/1553 (100%), Gaps = 0/1553 (0%) |
NCBI |
Show Blast
|
| XP_001415454.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 2892
Identities = 1393/1547 (90%), Positives = 1486/1547 (96%), Gaps = 0/1547 (0%) |
NCBI |
Show Blast
|
| EEH59576.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 2220
Identities = 1073/1554 (69%), Positives = 1289/1554 (82%), Gaps = 6/1554 (0%) |
NCBI |
Show Blast
|
| XP_002500555.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 2192
Identities = 1042/1554 (67%), Positives = 1270/1554 (81%), Gaps = 5/1554 (0%) |
NCBI |
Show Blast
|
| XP_001753098.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 2026
Identities = 971/1548 (62%), Positives = 1231/1548 (79%), Gaps = 8/1548 (0%) |
NCBI |
Show Blast
|
| XP_001772180.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 2023
Identities = 968/1548 (62%), Positives = 1230/1548 (79%), Gaps = 8/1548 (0%) |
NCBI |
Show Blast
|
| XP_002276855.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 1999
Identities = 963/1550 (62%), Positives = 1218/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| XP_001785223.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 1999
Identities = 965/1555 (62%), Positives = 1225/1555 (78%), Gaps = 13/1555 (0%) |
NCBI |
Show Blast
|
| XP_002269905.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 1996
Identities = 963/1550 (62%), Positives = 1217/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| XP_002316201.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 1983
Identities = 953/1550 (61%), Positives = 1219/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAH55997.1 |
unknown [environmental sequence]
Evalue: 1e-177 | Bitscore: 622
Identities = 323/378 (85%), Positives = 352/378 (93%) |
GOS |
Show Blast
|
| EAD23332.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 486
Identities = 230/271 (84%), Positives = 248/271 (91%) |
GOS |
Show Blast
|
| EAE29700.1 |
unknown [environmental sequence]
Evalue: 1e-106 | Bitscore: 387
Identities = 186/263 (70%), Positives = 210/263 (79%), Gaps = 2/263 (0%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL50094.1 |
clathrin heavy chain, putative (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3162
Identities = 1553/1553 (100%), Positives = 1553/1553 (100%), Gaps = 0/1553 (0%) |
NCBI |
Show Blast
|
| XP_001415454.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 2892
Identities = 1393/1547 (90%), Positives = 1486/1547 (96%), Gaps = 0/1547 (0%) |
NCBI |
Show Blast
|
| EEH59576.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 2220
Identities = 1073/1554 (69%), Positives = 1289/1554 (82%), Gaps = 6/1554 (0%) |
NCBI |
Show Blast
|
| XP_002500555.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 2192
Identities = 1042/1554 (67%), Positives = 1270/1554 (81%), Gaps = 5/1554 (0%) |
NCBI |
Show Blast
|
| XP_001753098.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 2026
Identities = 971/1548 (62%), Positives = 1231/1548 (79%), Gaps = 8/1548 (0%) |
NCBI |
Show Blast
|
| XP_001772180.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 2023
Identities = 968/1548 (62%), Positives = 1230/1548 (79%), Gaps = 8/1548 (0%) |
NCBI |
Show Blast
|
| XP_002276855.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 1999
Identities = 963/1550 (62%), Positives = 1218/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| XP_001785223.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 1999
Identities = 965/1555 (62%), Positives = 1225/1555 (78%), Gaps = 13/1555 (0%) |
NCBI |
Show Blast
|
| XP_002269905.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 1996
Identities = 963/1550 (62%), Positives = 1217/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| XP_002316201.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 1983
Identities = 953/1550 (61%), Positives = 1219/1550 (78%), Gaps = 8/1550 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q00610 |
Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Evalue: 0.0 | Bitscore: 1567
Identities = 775/1520 (50%), Positives = 1065/1520 (70%), Gaps = 16/1520 (1%) |
SwissP |
Show Blast
|
| Q68FD5 |
Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Evalue: 0.0 | Bitscore: 1567
Identities = 776/1520 (51%), Positives = 1065/1520 (70%), Gaps = 16/1520 (1%) |
SwissP |
Show Blast
|
| P49951 |
Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Evalue: 0.0 | Bitscore: 1566
Identities = 775/1520 (50%), Positives = 1065/1520 (70%), Gaps = 16/1520 (1%) |
SwissP |
Show Blast
|
| P11442 |
Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Evalue: 0.0 | Bitscore: 1561
Identities = 774/1520 (50%), Positives = 1064/1520 (70%), Gaps = 16/1520 (1%) |
SwissP |
Show Blast
|
| P29742 |
Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=1 SV=1
Evalue: 0.0 | Bitscore: 1555
Identities = 779/1526 (51%), Positives = 1071/1526 (70%), Gaps = 17/1526 (1%) |
SwissP |
Show Blast
|
| P25870 |
Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Evalue: 0.0 | Bitscore: 1521
Identities = 756/1525 (49%), Positives = 1064/1525 (69%), Gaps = 19/1525 (1%) |
SwissP |
Show Blast
|
| P34574 |
Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=1 SV=1
Evalue: 0.0 | Bitscore: 1497
Identities = 752/1529 (49%), Positives = 1052/1529 (68%), Gaps = 20/1529 (1%) |
SwissP |
Show Blast
|
| P53675 |
Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Evalue: 0.0 | Bitscore: 1495
Identities = 759/1520 (49%), Positives = 1054/1520 (69%), Gaps = 16/1520 (1%) |
SwissP |
Show Blast
|
| Q10161 |
Probable clathrin heavy chain OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1
Evalue: 0.0 | Bitscore: 1385
Identities = 698/1524 (45%), Positives = 1027/1524 (67%), Gaps = 17/1524 (1%) |
SwissP |
Show Blast
|
| P22137 |
Clathrin heavy chain OS=Saccharomyces cerevisiae GN=CHC1 PE=1 SV=1
Evalue: 0.0 | Bitscore: 1291
Identities = 666/1553 (42%), Positives = 1016/1553 (65%), Gaps = 16/1553 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G11130.1 |
| Symbols: | clathrin heavy chain, putative | chr3:3482581-3491673 REVERSE
Evalue: 0.0 | Bitscore: 1928
Identities = 936/1550 (60%), Positives = 1193/1550 (76%), Gaps = 8/1550 (0%) |
Tair |
Show Blast
|
| AT3G08530.1 |
| Symbols: | clathrin heavy chain, putative | chr3:2587177-2595417 REVERSE
Evalue: 0.0 | Bitscore: 1926
Identities = 934/1550 (60%), Positives = 1191/1550 (76%), Gaps = 8/1550 (0%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01744 |
Support Model | Y |
More Info |
| Mapping Location | 277776..278663 |
Strand + |
| EST ID | OtEST02943 |
Support Model | Y |
More Info |
| Mapping Location | 277776..278663 |
Strand + |
|
