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Ostreococcus tauri


Gene ID
Ot17g01630
Locus
Ot17g01630
Functional Description
unnamed product
Gene Type
protein-coding gene
Contig
chrom17
Last Modified On
09 March 2010 14h16
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR005114 Helicase-associated InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL57890.1 unnamed protein product [Ostreococcus tauri]
Evalue: 1e-134 | Bitscore: 483
Identities = 327/327 (100%), Positives = 327/327 (100%), Gaps = 0/327 (0%)		 NCBI
Show Blast
NP_624363.1 hypothetical protein SCO0002 [Streptomyces coelicolor A3(2)]
Evalue: 0.012 | Bitscore: 45
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)		 NCBI
Show Blast
XP_001417822.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.014 | Bitscore: 45
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 20/110 (18%)		 NCBI
Show Blast
ZP_06145146.1 helicase, putative [Ruminococcus flavefaciens FD-1]
Evalue: 0.053 | Bitscore: 43
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 7/115 (6%)		 NCBI
Show Blast
ZP_01999175.1 helicase domain protein [Beggiatoa sp. PS]
Evalue: 0.078 | Bitscore: 42
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)		 NCBI
Show Blast
XP_002290362.1 hypothetical protein THAPSDRAFT_262599 [Thalassiosira pseudonana CCMP1335]
Evalue: 0.084 | Bitscore: 42
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)		 NCBI
Show Blast
XP_001422017.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.11 | Bitscore: 42
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 0/54 (0%)		 NCBI
Show Blast
CAL54133.1 helicase, putative (ISS) [Ostreococcus tauri]
Evalue: 0.17 | Bitscore: 41
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)		 NCBI
Show Blast
Ot05g03780 chrom05.0001 [596945..598618]
Evalue: 0.0003 | Bitscore: 40
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)		 Self
Show Blast
YP_001965264.1 hypothetical protein pFRL1.58c [Streptomyces sp. FR1]
Evalue: 0.43 | Bitscore: 40
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT17G01630
Redo Blast
CDS Length
1083 nucleotides
CDS Sequence

Protein 

Locus ID
OT17G01630
Redo Blast
Protein Length
212 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDOtEST01489 Support ModelN More Info
CommentEST is not matching the given gene model.