- Gene ID
- Ot17g01620
- Locus
- Ot17g01620
- Functional Description
- Protein required for actin cytoskeleton organization and cell cycle progression (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom17
- Last Modified On
- 09 March 2010 14h16
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Protein required for actin cytoskeleton organization and cell cycle progression (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR012977 |
Domain of unknown function, nucleolar NUC130/133, N-terminal |
InterPro |
|
IPR016024 |
Armadillo-type fold |
InterPro |
|
IPR007949 |
SDA1 |
InterPro |
|
PTHR12730 |
HSDA/SDA1-RELATED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57889.1 |
Protein required for actin cytoskeleton organization and cell cycle progression (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1044
Identities = 558/558 (100%), Positives = 558/558 (100%), Gaps = 0/558 (0%) |
NCBI |
Show Blast
|
| XP_001422016.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-103 | Bitscore: 381
Identities = 184/229 (80%), Positives = 200/229 (87%), Gaps = 19/229 (8%) |
NCBI |
Show Blast
|
| XP_002502278.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-76 | Bitscore: 290
Identities = 143/223 (64%), Positives = 174/223 (78%), Gaps = 20/223 (8%) |
NCBI |
Show Blast
|
| EEH51657.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-73 | Bitscore: 281
Identities = 145/226 (64%), Positives = 177/226 (78%), Gaps = 21/226 (9%) |
NCBI |
Show Blast
|
| XP_002312655.1 |
predicted protein [Populus trichocarpa]
Evalue: 1e-59 | Bitscore: 236
Identities = 119/278 (42%), Positives = 173/278 (62%), Gaps = 25/278 (8%) |
NCBI |
Show Blast
|
| NP_001053971.1 |
Os04g0630000 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-58 | Bitscore: 232
Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002447151.1 |
hypothetical protein SORBIDRAFT_06g029510 [Sorghum bicolor]
Evalue: 2e-58 | Bitscore: 231
Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002282097.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 7e-58 | Bitscore: 230
Identities = 111/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| CBI16831.1 |
unnamed protein product [Vitis vinifera]
Evalue: 1e-57 | Bitscore: 229
Identities = 111/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002515043.1 |
dentin sialophosphoprotein precursor, putative [Ricinus communis]
Evalue: 5e-57 | Bitscore: 227
Identities = 108/230 (46%), Positives = 150/230 (65%), Gaps = 20/230 (8%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC71733.1 |
unknown [environmental sequence]
Evalue: 5e-32 | Bitscore: 139
Identities = 80/129 (62%), Positives = 92/129 (71%) |
GOS |
Show Blast
|
| EAC83281.1 |
unknown [environmental sequence]
Evalue: 6e-27 | Bitscore: 122
Identities = 63/90 (70%), Positives = 72/90 (80%) |
GOS |
Show Blast
|
| EAE18204.1 |
unknown [environmental sequence]
Evalue: 8e-18 | Bitscore: 92
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 9/129 (6%) |
GOS |
Show Blast
|
| EAE74721.1 |
unknown [environmental sequence]
Evalue: 2e-05 | Bitscore: 51
Identities = 21/65 (32%), Positives = 41/65 (63%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57889.1 |
Protein required for actin cytoskeleton organization and cell cycle progression (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1044
Identities = 558/558 (100%), Positives = 558/558 (100%), Gaps = 0/558 (0%) |
NCBI |
Show Blast
|
| XP_001422016.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-103 | Bitscore: 381
Identities = 184/229 (80%), Positives = 200/229 (87%), Gaps = 19/229 (8%) |
NCBI |
Show Blast
|
| XP_002502278.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-76 | Bitscore: 290
Identities = 143/223 (64%), Positives = 174/223 (78%), Gaps = 20/223 (8%) |
NCBI |
Show Blast
|
| EEH51657.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-73 | Bitscore: 281
Identities = 145/226 (64%), Positives = 177/226 (78%), Gaps = 21/226 (9%) |
NCBI |
Show Blast
|
| XP_002312655.1 |
predicted protein [Populus trichocarpa]
Evalue: 1e-59 | Bitscore: 236
Identities = 119/278 (42%), Positives = 173/278 (62%), Gaps = 25/278 (8%) |
NCBI |
Show Blast
|
| NP_001053971.1 |
Os04g0630000 [Oryza sativa (japonica cultivar-group)]
Evalue: 1e-58 | Bitscore: 232
Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002447151.1 |
hypothetical protein SORBIDRAFT_06g029510 [Sorghum bicolor]
Evalue: 2e-58 | Bitscore: 231
Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002282097.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 7e-58 | Bitscore: 230
Identities = 111/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| CBI16831.1 |
unnamed protein product [Vitis vinifera]
Evalue: 1e-57 | Bitscore: 229
Identities = 111/229 (48%), Positives = 150/229 (65%), Gaps = 20/229 (8%) |
NCBI |
Show Blast
|
| XP_002515043.1 |
dentin sialophosphoprotein precursor, putative [Ricinus communis]
Evalue: 5e-57 | Bitscore: 227
Identities = 108/230 (46%), Positives = 150/230 (65%), Gaps = 20/230 (8%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A7S6A5 |
Protein SDA1 homolog OS=Nematostella vectensis GN=sdad1 PE=3 SV=1
Evalue: 3e-45 | Bitscore: 184
Identities = 99/214 (46%), Positives = 132/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q7KKH3 |
Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1
Evalue: 8e-44 | Bitscore: 179
Identities = 97/220 (44%), Positives = 135/220 (61%), Gaps = 21/220 (9%) |
SwissP |
Show Blast
|
| Q6NV26 |
Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1
Evalue: 1e-43 | Bitscore: 178
Identities = 92/214 (42%), Positives = 136/214 (63%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q2VPG3 |
Protein SDA1 homolog OS=Xenopus laevis GN=sdad1 PE=2 SV=1
Evalue: 4e-42 | Bitscore: 173
Identities = 92/214 (42%), Positives = 134/214 (62%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q55DE2 |
Protein SDA1 homolog OS=Dictyostelium discoideum GN=sdad1 PE=3 SV=1
Evalue: 8e-42 | Bitscore: 172
Identities = 87/216 (40%), Positives = 131/216 (60%) |
SwissP |
Show Blast
|
| A4IIB1 |
Protein SDA1 homolog OS=Xenopus tropicalis GN=sdad1 PE=2 SV=1
Evalue: 7e-41 | Bitscore: 169
Identities = 92/214 (42%), Positives = 132/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q9NVU7 |
Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=2
Evalue: 1e-40 | Bitscore: 169
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| A5D7C2 |
Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 SV=1
Evalue: 2e-40 | Bitscore: 168
Identities = 93/214 (43%), Positives = 131/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q80UZ2 |
Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
Evalue: 3e-40 | Bitscore: 167
Identities = 93/214 (43%), Positives = 131/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| Q5XIQ5 |
Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=2 SV=1
Evalue: 3e-40 | Bitscore: 167
Identities = 93/214 (43%), Positives = 131/214 (61%), Gaps = 21/214 (9%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G13160.1 |
| Symbols: | SDA1 family protein | chr1:4484631-4488385 FORWARD
Evalue: 1e-45 | Bitscore: 181
Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 22/232 (9%) |
Tair |
Show Blast
|
| AT4G31520.1 |
| Symbols: | SDA1 family protein | chr4:15278287-15281745 REVERSE
Evalue: 4e-33 | Bitscore: 140
Identities = 93/259 (35%), Positives = 137/259 (52%), Gaps = 50/259 (19%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST01489 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 66427..66451,307330..307850 |
Strand - |
|
