- Gene ID
- Ot16g00490
- Locus
- Ot16g00490
- Functional Description
- Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom16
- Last Modified On
- 09 March 2010 13h10
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
- Biological Process
-
1.
metabolic process
Protein Domains
| Domain ID | Description | Database |
|---|
|
G3DSA:3.40.50.970 |
no description |
Gene3D |
|
SSF52518 |
Thiamin diphosphate-binding fold (THDP-binding) |
superfamily |
|
IPR011603 |
2-oxoglutarate dehydrogenase, E1 component |
InterPro |
|
IPR005475 |
Transketolase-like, pyrimidine-binding domain |
InterPro |
|
IPR001017 |
Dehydrogenase, E1 component |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL58048.1 |
Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 2297
Identities = 1209/1209 (100%), Positives = 1209/1209 (100%), Gaps = 0/1209 (0%) |
NCBI |
Show Blast
|
| XP_001421691.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 857
Identities = 406/525 (77%), Positives = 455/525 (86%), Gaps = 20/525 (3%) |
NCBI |
Show Blast
|
| EAJ62688.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 722
Identities = 344/430 (80%), Positives = 382/430 (88%), Gaps = 1/430 (0%) |
GOS |
Show Blast
|
| EEH54505.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 698
Identities = 381/743 (51%), Positives = 485/743 (65%), Gaps = 64/743 (8%) |
NCBI |
Show Blast
|
| XP_001780036.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-162 | Bitscore: 579
Identities = 323/647 (49%), Positives = 409/647 (63%), Gaps = 40/647 (6%) |
NCBI |
Show Blast
|
| EFC48328.1 |
2-oxoglutarate dehydrogenase [Naegleria gruberi]
Evalue: 5e-144 | Bitscore: 516
Identities = 300/743 (40%), Positives = 419/743 (56%), Gaps = 80/743 (10%) |
NCBI |
Show Blast
|
| XP_001753674.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-142 | Bitscore: 512
Identities = 310/751 (41%), Positives = 430/751 (57%), Gaps = 102/751 (13%) |
NCBI |
Show Blast
|
| XP_002501705.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-142 | Bitscore: 510
Identities = 309/753 (41%), Positives = 426/753 (56%), Gaps = 99/753 (13%) |
NCBI |
Show Blast
|
| XP_002446306.1 |
hypothetical protein SORBIDRAFT_06g013930 [Sorghum bicolor]
Evalue: 2e-139 | Bitscore: 501
Identities = 303/748 (40%), Positives = 424/748 (56%), Gaps = 93/748 (12%) |
NCBI |
Show Blast
|
| XP_002446307.1 |
hypothetical protein SORBIDRAFT_06g013940 [Sorghum bicolor]
Evalue: 5e-139 | Bitscore: 500
Identities = 303/748 (40%), Positives = 423/748 (56%), Gaps = 93/748 (12%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ62688.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 722
Identities = 344/430 (80%), Positives = 382/430 (88%), Gaps = 1/430 (0%) |
GOS |
Show Blast
|
| EAH93059.1 |
unknown [environmental sequence]
Evalue: 1e-138 | Bitscore: 494
Identities = 299/743 (40%), Positives = 402/743 (54%), Gaps = 98/743 (13%) |
GOS |
Show Blast
|
| EAI66220.1 |
unknown [environmental sequence]
Evalue: 1e-138 | Bitscore: 491
Identities = 296/744 (39%), Positives = 400/744 (53%), Gaps = 100/744 (13%) |
GOS |
Show Blast
|
| EAJ49900.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 487
Identities = 291/741 (39%), Positives = 397/741 (53%), Gaps = 95/741 (12%) |
GOS |
Show Blast
|
| EAK26639.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 487
Identities = 289/742 (38%), Positives = 409/742 (55%), Gaps = 95/742 (12%) |
GOS |
Show Blast
|
| EAJ68235.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 486
Identities = 291/739 (39%), Positives = 400/739 (54%), Gaps = 100/739 (13%) |
GOS |
Show Blast
|
| EAK69135.1 |
unknown [environmental sequence]
Evalue: 1e-136 | Bitscore: 486
Identities = 294/750 (39%), Positives = 400/750 (53%), Gaps = 113/750 (15%) |
GOS |
Show Blast
|
| EAI03752.1 |
unknown [environmental sequence]
Evalue: 1e-135 | Bitscore: 483
Identities = 274/637 (43%), Positives = 376/637 (59%), Gaps = 56/637 (8%) |
GOS |
Show Blast
|
| EAJ87511.1 |
unknown [environmental sequence]
Evalue: 1e-135 | Bitscore: 483
Identities = 291/741 (39%), Positives = 396/741 (53%), Gaps = 95/741 (12%) |
GOS |
Show Blast
|
| EAJ60178.1 |
unknown [environmental sequence]
Evalue: 1e-135 | Bitscore: 481
Identities = 293/746 (39%), Positives = 400/746 (53%), Gaps = 104/746 (13%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL58048.1 |
Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 2297
Identities = 1209/1209 (100%), Positives = 1209/1209 (100%), Gaps = 0/1209 (0%) |
NCBI |
Show Blast
|
| XP_001421691.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 857
Identities = 406/525 (77%), Positives = 455/525 (86%), Gaps = 20/525 (3%) |
NCBI |
Show Blast
|
| EEH54505.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 698
Identities = 381/743 (51%), Positives = 485/743 (65%), Gaps = 64/743 (8%) |
NCBI |
Show Blast
|
| XP_001780036.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-162 | Bitscore: 579
Identities = 323/647 (49%), Positives = 409/647 (63%), Gaps = 40/647 (6%) |
NCBI |
Show Blast
|
| EFC48328.1 |
2-oxoglutarate dehydrogenase [Naegleria gruberi]
Evalue: 5e-144 | Bitscore: 516
Identities = 300/743 (40%), Positives = 419/743 (56%), Gaps = 80/743 (10%) |
NCBI |
Show Blast
|
| XP_001753674.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-142 | Bitscore: 512
Identities = 310/751 (41%), Positives = 430/751 (57%), Gaps = 102/751 (13%) |
NCBI |
Show Blast
|
| XP_002501705.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-142 | Bitscore: 510
Identities = 309/753 (41%), Positives = 426/753 (56%), Gaps = 99/753 (13%) |
NCBI |
Show Blast
|
| XP_002446306.1 |
hypothetical protein SORBIDRAFT_06g013930 [Sorghum bicolor]
Evalue: 2e-139 | Bitscore: 501
Identities = 303/748 (40%), Positives = 424/748 (56%), Gaps = 93/748 (12%) |
NCBI |
Show Blast
|
| XP_002446307.1 |
hypothetical protein SORBIDRAFT_06g013940 [Sorghum bicolor]
Evalue: 5e-139 | Bitscore: 500
Identities = 303/748 (40%), Positives = 423/748 (56%), Gaps = 93/748 (12%) |
NCBI |
Show Blast
|
| XP_002528465.1 |
2-oxoglutarate dehydrogenase, putative [Ricinus communis]
Evalue: 2e-138 | Bitscore: 498
Identities = 307/748 (41%), Positives = 425/748 (56%), Gaps = 94/748 (12%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot03g02230 |
chrom03.0001 [351303..351458,351524..354736]
Evalue: 1e-136 | Bitscore: 483
Identities = 303/755 (40%), Positives = 419/755 (55%), Gaps = 101/755 (13%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A6WXF0 |
2-oxoglutarate dehydrogenase E1 component OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucA PE=3
Evalue: 1e-135 | Bitscore: 482
Identities = 306/757 (40%), Positives = 402/757 (53%), Gaps = 112/757 (14%) |
SwissP |
Show Blast
|
| Q54JE4 |
2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1
Evalue: 1e-135 | Bitscore: 482
Identities = 295/752 (39%), Positives = 415/752 (55%), Gaps = 101/752 (13%) |
SwissP |
Show Blast
|
| A5VSQ0 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucA PE=3 SV=1
Evalue: 1e-132 | Bitscore: 474
Identities = 303/757 (40%), Positives = 402/757 (53%), Gaps = 112/757 (14%) |
SwissP |
Show Blast
|
| B2S877 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain S19) GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| Q8FYF7 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella suis GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| Q8YJE4 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| C0RFG8 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| Q57AX5 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| Q2YLS2 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella abortus (strain 2308) GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| A9M8Q9 |
2-oxoglutarate dehydrogenase E1 component OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucA PE=3 SV=1
Evalue: 1e-131 | Bitscore: 471
Identities = 301/759 (39%), Positives = 399/759 (52%), Gaps = 116/759 (15%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G55410.1 |
| Symbols: | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative /
Evalue: 1e-139 | Bitscore: 494
Identities = 301/746 (40%), Positives = 413/746 (55%), Gaps = 91/746 (12%) |
Tair |
Show Blast
|
| AT5G65750.1 |
| Symbols: | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative /
Evalue: 1e-139 | Bitscore: 492
Identities = 303/748 (40%), Positives = 415/748 (55%), Gaps = 94/748 (12%) |
Tair |
Show Blast
|
| AT2G30350.2 |
| Symbols: | endo/excinuclease amino terminal domain-containing protein | chr2:12941314-12942819 REVERSE
Evalue: 5e-07 | Bitscore: 54
Identities = 23/54 (42%), Positives = 34/54 (62%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST02418 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 54939..55851,185753..185778 |
Strand + |
| EST ID | OtEST03143 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 54939..55851,185753..185778 |
Strand + |
|
