- Gene ID
- Ot16g00480
- Locus
- Ot16g00480
- Functional Description
- CG18271-PA (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom16
- Last Modified On
- 09 March 2010 13h10
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- CG18271-PA (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
catalytic activity
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
PTHR20208 |
FAMILY NOT NAMED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL58047.1 |
GIY-YIG type nuclease (ISS) [Ostreococcus tauri]
Evalue: 3e-158 | Bitscore: 561
Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) |
NCBI |
Show Blast
|
| XP_001421690.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-54 | Bitscore: 217
Identities = 135/291 (46%), Positives = 177/291 (60%), Gaps = 31/291 (10%) |
NCBI |
Show Blast
|
| EAD96340.1 |
unknown [environmental sequence]
Evalue: 3e-49 | Bitscore: 194
Identities = 127/266 (47%), Positives = 163/266 (61%), Gaps = 16/266 (6%) |
GOS |
Show Blast
|
| XP_002502748.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-23 | Bitscore: 112
Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 28/254 (11%) |
NCBI |
Show Blast
|
| EEH54504.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-15 | Bitscore: 86
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
| XP_001898482.1 |
GIY-YIG catalytic domain containing protein [Brugia malayi] sp|A8PV03.1|SLX1_BRUMA RecName: Full=Structure-specific endonuclease subunit SLX1 homolog
Evalue: 7e-13 | Bitscore: 79
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%) |
NCBI |
Show Blast
|
| A8PV03 |
Structure-specific endonuclease subunit SLX1 homolog OS=Brugia malayi GN=Bm1_35165 PE=3 SV=1
Evalue: 1e-13 | Bitscore: 77
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%) |
SwissP |
Show Blast
|
| XP_002170246.1 |
PREDICTED: hypothetical protein [Hydra magnipapillata]
Evalue: 1e-11 | Bitscore: 74
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 21/234 (8%) |
NCBI |
Show Blast
|
| NP_001090376.1 |
structure-specific endonuclease subunit slx1 [Xenopus laevis] sp|Q0IH86.1|SLX1_XENLA RecName: Full=Structure-specific endonuclease subunit slx1; AltNa
Evalue: 3e-10 | Bitscore: 70
Identities = 67/217 (30%), Positives = 92/217 (42%), Gaps = 30/217 (13%) |
NCBI |
Show Blast
|
| Q0IH86 |
Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1
Evalue: 3e-11 | Bitscore: 69
Identities = 68/218 (31%), Positives = 96/218 (44%), Gaps = 32/218 (14%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD96340.1 |
unknown [environmental sequence]
Evalue: 3e-49 | Bitscore: 194
Identities = 127/266 (47%), Positives = 163/266 (61%), Gaps = 16/266 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL58047.1 |
GIY-YIG type nuclease (ISS) [Ostreococcus tauri]
Evalue: 3e-158 | Bitscore: 561
Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) |
NCBI |
Show Blast
|
| XP_001421690.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-54 | Bitscore: 217
Identities = 135/291 (46%), Positives = 177/291 (60%), Gaps = 31/291 (10%) |
NCBI |
Show Blast
|
| XP_002502748.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-23 | Bitscore: 112
Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 28/254 (11%) |
NCBI |
Show Blast
|
| EEH54504.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-15 | Bitscore: 86
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 0/92 (0%) |
NCBI |
Show Blast
|
| XP_001898482.1 |
GIY-YIG catalytic domain containing protein [Brugia malayi] sp|A8PV03.1|SLX1_BRUMA RecName: Full=Structure-specific endonuclease subunit SLX1 homolog
Evalue: 7e-13 | Bitscore: 79
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%) |
NCBI |
Show Blast
|
| XP_002170246.1 |
PREDICTED: hypothetical protein [Hydra magnipapillata]
Evalue: 1e-11 | Bitscore: 74
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 21/234 (8%) |
NCBI |
Show Blast
|
| NP_001090376.1 |
structure-specific endonuclease subunit slx1 [Xenopus laevis] sp|Q0IH86.1|SLX1_XENLA RecName: Full=Structure-specific endonuclease subunit slx1; AltNa
Evalue: 3e-10 | Bitscore: 70
Identities = 67/217 (30%), Positives = 92/217 (42%), Gaps = 30/217 (13%) |
NCBI |
Show Blast
|
| XP_001880448.1 |
predicted protein [Laccaria bicolor S238N-H82]
Evalue: 1e-08 | Bitscore: 64
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 18/219 (8%) |
NCBI |
Show Blast
|
| XP_001990683.1 |
GH19497 [Drosophila grimshawi] sp|B4JGW7.1|SLX1_DROGR RecName: Full=Structure-specific endonuclease subunit SLX1 homolog
Evalue: 2e-08 | Bitscore: 64
Identities = 61/219 (27%), Positives = 90/219 (41%), Gaps = 44/219 (20%) |
NCBI |
Show Blast
|
| XP_001602968.1 |
PREDICTED: similar to MGC154531 protein [Nasonia vitripennis]
Evalue: 2e-08 | Bitscore: 63
Identities = 61/213 (28%), Positives = 83/213 (38%), Gaps = 34/213 (15%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A8PV03 |
Structure-specific endonuclease subunit SLX1 homolog OS=Brugia malayi GN=Bm1_35165 PE=3 SV=1
Evalue: 1e-13 | Bitscore: 77
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%) |
SwissP |
Show Blast
|
| Q0IH86 |
Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1
Evalue: 3e-11 | Bitscore: 69
Identities = 68/218 (31%), Positives = 96/218 (44%), Gaps = 32/218 (14%) |
SwissP |
Show Blast
|
| A7STV9 |
Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1
Evalue: 4e-10 | Bitscore: 65
Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 33/225 (14%) |
SwissP |
Show Blast
|
| Q5CT62 |
Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum GN=cgd2_4280 PE=3 SV=1
Evalue: 3e-09 | Bitscore: 62
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 13/85 (15%) |
SwissP |
Show Blast
|
| B4I3R2 |
Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila sechellia GN=GM10768 PE=3 SV=2
Evalue: 8e-09 | Bitscore: 61
Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 41/234 (17%) |
SwissP |
Show Blast
|
| B3P230 |
Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila erecta GN=GG12527 PE=3 SV=2
Evalue: 1e-08 | Bitscore: 60
Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 41/234 (17%) |
SwissP |
Show Blast
|
| B4JGW7 |
Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila grimshawi GN=GH19497 PE=3 SV=1
Evalue: 1e-08 | Bitscore: 60
Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 44/216 (20%) |
SwissP |
Show Blast
|
| Q9VN41 |
Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila melanogaster GN=CG18271 PE=1 SV=3
Evalue: 2e-08 | Bitscore: 60
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 41/234 (17%) |
SwissP |
Show Blast
|
| C0NTM8 |
Structure-specific endonuclease subunit SLX1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC
Evalue: 5e-07 | Bitscore: 55
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 40/237 (16%) |
SwissP |
Show Blast
|
| B2WM34 |
Structure-specific endonuclease subunit slx1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=slx1 PE=3 SV=1
Evalue: 7e-07 | Bitscore: 54
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 35/238 (14%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G30350.2 |
| Symbols: | endo/excinuclease amino terminal domain-containing protein | chr2:12941314-12942819 REVERSE
Evalue: 1e-05 | Bitscore: 47
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST02418 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 54939..55851,185753..185778 |
Strand + |
| EST ID | OtEST03143 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 54939..55851,185753..185778 |
Strand + |
|
