- Gene ID
- Ot16g00370
- Locus
- Ot16g00370
- Functional Description
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom16
- Last Modified On
- 27 January 2013 20h33
- History
-
Annotator
- Name
- Bram Verhelst
- Email
- brhel@psb.vib-ugent.be
- Lab
- Bioinformatics and Systems Biology
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
protein binding
- Biological Process
-
n/a
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ol15g00250 |
-
Evalue: 0.0 | Bitscore: 677
Identities = 319/332 (96%), Positives = 324/332 (97%) |
O.luci |
Show Blast
|
| EAK11583.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 675
Identities = 319/332 (96%), Positives = 324/332 (97%) |
GOS |
Show Blast
|
| XP_001421686.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 672
Identities = 324/332 (98%), Positives = 330/332 (99%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| CCO66052.1 |
actin [Bathycoccus prasinos]
Evalue: 0.0 | Bitscore: 644
Identities = 308/332 (93%), Positives = 323/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_003061104.1 |
actin, flagellar inner arm intermediate chain [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 631
Identities = 301/332 (91%), Positives = 319/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_002503091.1 |
hypothetical protein MICPUN_90942 [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 627
Identities = 298/332 (90%), Positives = 318/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_002977012.1 |
hypothetical protein SELMODRAFT_175956 [Selaginella moellendorffii]
Evalue: 0.0 | Bitscore: 627
Identities = 299/332 (90%), Positives = 321/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| AEM89276.1 |
actin [Narcissus tazetta var. chinensis]
Evalue: 0.0 | Bitscore: 626
Identities = 297/332 (89%), Positives = 322/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| ACJ84857.1 |
unknown [Medicago truncatula]
Evalue: 0.0 | Bitscore: 625
Identities = 295/332 (89%), Positives = 321/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| NP_187818.1 |
actin-11 [Arabidopsis thaliana] sp|P53496.1|ACT11_ARATH RecName: Full=Actin-11
Evalue: 0.0 | Bitscore: 625
Identities = 296/332 (89%), Positives = 319/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK11583.1 |
unknown [environmental sequence]
Evalue: 0.0 | Bitscore: 675
Identities = 319/332 (96%), Positives = 324/332 (97%) |
GOS |
Show Blast
|
| EAB74616.1 |
unknown [environmental sequence]
Evalue: 3e-99 | Bitscore: 361
Identities = 164/205 (80%), Positives = 190/205 (92%) |
GOS |
Show Blast
|
| EAD15751.1 |
unknown [environmental sequence]
Evalue: 4e-26 | Bitscore: 118
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 57/235 (24%) |
GOS |
Show Blast
|
| EAE32562.1 |
unknown [environmental sequence]
Evalue: 6e-23 | Bitscore: 107
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 3/96 (3%) |
GOS |
Show Blast
|
| EAC22233.1 |
unknown [environmental sequence]
Evalue: 3e-16 | Bitscore: 85
Identities = 37/46 (80%), Positives = 45/46 (97%) |
GOS |
Show Blast
|
| EAF55222.1 |
unknown [environmental sequence]
Evalue: 6e-14 | Bitscore: 77
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 3/122 (2%) |
GOS |
Show Blast
|
| EAC22014.1 |
unknown [environmental sequence]
Evalue: 1e-11 | Bitscore: 70
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 9/88 (10%) |
GOS |
Show Blast
|
| EAB55340.1 |
unknown [environmental sequence]
Evalue: 3e-09 | Bitscore: 62
Identities = 24/26 (92%), Positives = 26/26 (100%) |
GOS |
Show Blast
|
| EAF95834.1 |
unknown [environmental sequence]
Evalue: 2e-07 | Bitscore: 56
Identities = 25/45 (55%), Positives = 33/45 (73%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_001421686.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 672
Identities = 324/332 (98%), Positives = 330/332 (99%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| CCO66052.1 |
actin [Bathycoccus prasinos]
Evalue: 0.0 | Bitscore: 644
Identities = 308/332 (93%), Positives = 323/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_003061104.1 |
actin, flagellar inner arm intermediate chain [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 631
Identities = 301/332 (91%), Positives = 319/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_002503091.1 |
hypothetical protein MICPUN_90942 [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 627
Identities = 298/332 (90%), Positives = 318/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| XP_002977012.1 |
hypothetical protein SELMODRAFT_175956 [Selaginella moellendorffii]
Evalue: 0.0 | Bitscore: 627
Identities = 299/332 (90%), Positives = 321/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| AEM89276.1 |
actin [Narcissus tazetta var. chinensis]
Evalue: 0.0 | Bitscore: 626
Identities = 297/332 (89%), Positives = 322/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| ACJ84857.1 |
unknown [Medicago truncatula]
Evalue: 0.0 | Bitscore: 625
Identities = 295/332 (89%), Positives = 321/332 (97%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| NP_187818.1 |
actin-11 [Arabidopsis thaliana] sp|P53496.1|ACT11_ARATH RecName: Full=Actin-11
Evalue: 0.0 | Bitscore: 625
Identities = 296/332 (89%), Positives = 319/332 (96%), Gaps = 0/332 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ol15g00250 |
-
Evalue: 0.0 | Bitscore: 677
Identities = 319/332 (96%), Positives = 324/332 (97%) |
O.luci |
Show Blast
|
| Ol20g03150 |
-
Evalue: 1e-80 | Bitscore: 294
Identities = 144/337 (42%), Positives = 206/337 (61%), Gaps = 13/337 (3%) |
O.luci |
Show Blast
|
| Ol00g02270 |
+
Evalue: 1e-60 | Bitscore: 228
Identities = 132/359 (36%), Positives = 182/359 (50%), Gaps = 33/359 (9%) |
O.luci |
Show Blast
|
| Ol04g02680 |
+
Evalue: 3e-56 | Bitscore: 213
Identities = 121/348 (34%), Positives = 185/348 (53%), Gaps = 48/348 (13%) |
O.luci |
Show Blast
|
| Ol06g02430 |
-
Evalue: 5e-20 | Bitscore: 93
Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 31/288 (10%) |
O.luci |
Show Blast
|
| Ol08g01220 |
+
Evalue: 3e-19 | Bitscore: 90
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 19/207 (9%) |
O.luci |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot14g03380 |
length:407 (n/a) (ARP2 (ISS))
Evalue: 3e-82 | Bitscore: 300
Identities = 148/337 (43%), Positives = 206/337 (61%), Gaps = 13/337 (3%) |
Self |
Show Blast
|
| Ot01g02250 |
length:642 (n/a) (actin-related protein 3 (ISS))
Evalue: 2e-57 | Bitscore: 217
Identities = 127/369 (34%), Positives = 187/369 (50%), Gaps = 55/369 (14%) |
Self |
Show Blast
|
| Ot04g02770 |
length:425 (n/a) (Actin-related protein Arp2/3 complex, subunit Arp2 (ISS))
Evalue: 1e-55 | Bitscore: 211
Identities = 123/348 (35%), Positives = 184/348 (52%), Gaps = 48/348 (13%) |
Self |
Show Blast
|
| Ot14g02140 |
length:134 (n/a) (Actin-related protein Arp2/3 complex, subunit Arp2 (ISS))
Evalue: 2e-20 | Bitscore: 94
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 12/129 (9%) |
Self |
Show Blast
|
| Ot06g02750 |
length:343 (n/a) (actin -like protein (ISS))
Evalue: 2e-12 | Bitscore: 68
Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 22/263 (8%) |
Self |
Show Blast
|
| Ot08g01330 |
length:193 (n/a) (Actin-related protein Arp2/3 complex, subunit Arp2 (ISS))
Evalue: 6e-12 | Bitscore: 66
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 3/123 (2%) |
Self |
Show Blast
|
| Ot08g01320 |
length:235 (n/a) (Actin-related protein Arp2/3 complex, subunit Arp2 (ISS))
Evalue: 3e-11 | Bitscore: 64
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 18/167 (10%) |
Self |
Show Blast
|
| No hits found against database SwissP with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G12110.1 |
| Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=1134 378
Evalue: 1e-180 | Bitscore: 625
Identities = 293/332 (88%), Positives = 314/332 (94%) |
Tair |
Show Blast
|
| AT5G09810.1 |
| Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=1134 378
Evalue: 1e-179 | Bitscore: 622
Identities = 292/332 (87%), Positives = 315/332 (94%) |
Tair |
Show Blast
|
| AT5G59370.1 |
| Symbols: ACT4 | actin 4 | chr5:23950109-23951586 FORWARD LENGTH=1134 378
Evalue: 1e-178 | Bitscore: 621
Identities = 289/332 (87%), Positives = 314/332 (94%) |
Tair |
Show Blast
|
| AT5G59370.2 |
| Symbols: ACT4 | actin 4 | chr5:23950109-23951586 FORWARD LENGTH=1134 378
Evalue: 1e-178 | Bitscore: 621
Identities = 289/332 (87%), Positives = 314/332 (94%) |
Tair |
Show Blast
|
| AT2G37620.2 |
| Symbols: ACT1, AAc1 | actin 1 | chr2:15779761-15781241 FORWARD LENGTH=1134 378
Evalue: 1e-178 | Bitscore: 620
Identities = 289/332 (87%), Positives = 313/332 (94%) |
Tair |
Show Blast
|
| AT3G53750.1 |
| Symbols: ACT3 | actin 3 | chr3:19915924-19917371 FORWARD LENGTH=1134 378
Evalue: 1e-178 | Bitscore: 620
Identities = 289/332 (87%), Positives = 313/332 (94%) |
Tair |
Show Blast
|
| AT2G37620.1 |
| Symbols: ACT1, AAc1 | actin 1 | chr2:15779761-15781241 FORWARD LENGTH=1134 378
Evalue: 1e-178 | Bitscore: 620
Identities = 289/332 (87%), Positives = 313/332 (94%) |
Tair |
Show Blast
|
| AT3G46520.1 |
| Symbols: ACT12 | actin-12 | chr3:17128567-17129981 FORWARD LENGTH=1134 378
Evalue: 1e-177 | Bitscore: 619
Identities = 288/332 (86%), Positives = 314/332 (94%) |
Tair |
Show Blast
|
| AT3G18780.2 |
| Symbols: ACT2, DER1, LSR2, ENL2 | actin 2 | chr3:6475535-6476832 FORWARD LENGTH=1134 378
Evalue: 1e-174 | Bitscore: 607
Identities = 282/332 (84%), Positives = 310/332 (93%) |
Tair |
Show Blast
|
| AT1G49240.1 |
| Symbols: ACT8 | actin 8 | chr1:18216539-18217947 FORWARD LENGTH=1134 378
Evalue: 1e-174 | Bitscore: 607
Identities = 282/332 (84%), Positives = 310/332 (93%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 3
Protein
Associated ESTs/cDNAs
- n/a
-
|
