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Ostreococcus tauri


Gene ID
Ot14g02140
Locus
Ot14g02140
Functional Description
Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
Gene Type
protein-coding gene
Contig
chrom14
Last Modified On
09 March 2010 11h52
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
actin filament

Molecular Function
1.
cytoskeletal motor activity

2.
structural constituent of cytoskeleton

3.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR004001 Actin, conserved site InterPro
G3DSA:3.30.420.40 no description Gene3D
IPR004000 Actin/actin-like InterPro
SSF53067 Actin-like ATPase domain superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
Ot14g03380 chrom14.0001 [487878..489098]
Evalue: 2e-77 | Bitscore: 281
Identities = 133/133 (100%), Positives = 133/133 (100%)
Self
Show Blast
CAL57082.1 actin-related protein 2 (ISS) [Ostreococcus tauri]
Evalue: 2e-74 | Bitscore: 281
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
NCBI
Show Blast
CAL56960.1 sea urchin Arp2 (ISS) [Ostreococcus tauri]
Evalue: 3e-72 | Bitscore: 274
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
NCBI
Show Blast
XP_001422774.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-71 | Bitscore: 271
Identities = 127/133 (95%), Positives = 132/133 (99%), Gaps = 0/133 (0%)
NCBI
Show Blast
Q6Z256 Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1
Evalue: 8e-44 | Bitscore: 175
Identities = 77/131 (58%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
SwissP
Show Blast
BAA88831.1 sea urchin Arp2 (SUArp2) [Hemicentrotus pulcherrimus]
Evalue: 2e-42 | Bitscore: 175
Identities = 83/132 (62%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
NCBI
Show Blast
A2YUL5 Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2
Evalue: 9e-44 | Bitscore: 174
Identities = 77/131 (58%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
SwissP
Show Blast
XP_001755450.1 actin related protein Arp2 subunit [Physcomitrella patens subsp. patens]
Evalue: 2e-42 | Bitscore: 174
Identities = 77/131 (58%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
NCBI
Show Blast
XP_572871.1 actin binding protein [Cryptococcus neoformans var. neoformans JEC21]
Evalue: 2e-42 | Bitscore: 174
Identities = 79/131 (60%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
NCBI
Show Blast
XP_572870.1 actin binding protein [Cryptococcus neoformans var. neoformans JEC21]
Evalue: 3e-42 | Bitscore: 174
Identities = 79/131 (60%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT14G02140
Redo Blast
CDS Length
402 nucleotides
CDS Sequence

Protein 

Locus ID
OT14G02140
Redo Blast
Protein Length
134 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a