- Gene ID
- Ot12g03120
- Locus
- Ot12g03120
- Functional Description
- 30S ribosomal protein S16-like [Oryza sativa (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom12
- Last Modified On
- 09 March 2010 10h26
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- 30S ribosomal protein S16-like [Oryza sativa (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
2.
ribosome
- Molecular Function
-
1.
structural constituent of ribosome
- Biological Process
-
1.
translation
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR000307 |
Ribosomal protein S16 |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57404.1 |
30S ribosomal protein S16-like (ISS) [Ostreococcus tauri]
Evalue: 2e-54 | Bitscore: 215
Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%) |
NCBI |
Show Blast
|
| XP_001420713.1 |
Putative mitochondrial ribosomal protein S16 [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-41 | Bitscore: 170
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 3/104 (2%) |
NCBI |
Show Blast
|
| XP_002501261.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-34 | Bitscore: 149
Identities = 69/93 (74%), Positives = 83/93 (89%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| EEH53161.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-30 | Bitscore: 135
Identities = 64/87 (73%), Positives = 75/87 (86%), Gaps = 0/87 (0%) |
NCBI |
Show Blast
|
| XP_001751469.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-29 | Bitscore: 129
Identities = 61/85 (71%), Positives = 70/85 (82%), Gaps = 0/85 (0%) |
NCBI |
Show Blast
|
| NP_001062247.1 |
Os08g0517900 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-27 | Bitscore: 124
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 0/87 (0%) |
NCBI |
Show Blast
|
| NP_200504.1 |
ribosomal protein S16 family protein [Arabidopsis thaliana]
Evalue: 1e-26 | Bitscore: 122
Identities = 57/100 (57%), Positives = 76/100 (76%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| AAM63199.1 |
30S ribosomal protein S16 [Arabidopsis thaliana]
Evalue: 1e-26 | Bitscore: 122
Identities = 57/100 (57%), Positives = 76/100 (76%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| NP_001063564.1 |
Os09g0498100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-26 | Bitscore: 122
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 5/96 (5%) |
NCBI |
Show Blast
|
| ACU13414.1 |
unknown [Glycine max]
Evalue: 4e-26 | Bitscore: 120
Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ70492.1 |
unknown [environmental sequence]
Evalue: 2e-21 | Bitscore: 100
Identities = 52/94 (55%), Positives = 64/94 (68%) |
GOS |
Show Blast
|
| EAH94684.1 |
unknown [environmental sequence]
Evalue: 2e-20 | Bitscore: 97
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 1/90 (1%) |
GOS |
Show Blast
|
| EAH26334.1 |
unknown [environmental sequence]
Evalue: 4e-20 | Bitscore: 96
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 1/90 (1%) |
GOS |
Show Blast
|
| EAD55663.1 |
unknown [environmental sequence]
Evalue: 4e-20 | Bitscore: 96
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 1/90 (1%) |
GOS |
Show Blast
|
| EAH22013.1 |
unknown [environmental sequence]
Evalue: 7e-20 | Bitscore: 95
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 1/90 (1%) |
GOS |
Show Blast
|
| EAK49390.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 52/94 (55%), Positives = 64/94 (68%) |
GOS |
Show Blast
|
| EAD85789.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 52/94 (55%), Positives = 64/94 (68%) |
GOS |
Show Blast
|
| EAC93265.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 52/94 (55%), Positives = 64/94 (68%) |
GOS |
Show Blast
|
| EAB32492.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 45/90 (50%), Positives = 67/90 (74%), Gaps = 1/90 (1%) |
GOS |
Show Blast
|
| EAE25799.1 |
unknown [environmental sequence]
Evalue: 1e-19 | Bitscore: 95
Identities = 52/94 (55%), Positives = 64/94 (68%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL57404.1 |
30S ribosomal protein S16-like (ISS) [Ostreococcus tauri]
Evalue: 2e-54 | Bitscore: 215
Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%) |
NCBI |
Show Blast
|
| XP_001420713.1 |
Putative mitochondrial ribosomal protein S16 [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-41 | Bitscore: 170
Identities = 83/104 (79%), Positives = 91/104 (87%), Gaps = 3/104 (2%) |
NCBI |
Show Blast
|
| XP_002501261.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-34 | Bitscore: 149
Identities = 69/93 (74%), Positives = 83/93 (89%), Gaps = 0/93 (0%) |
NCBI |
Show Blast
|
| EEH53161.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-30 | Bitscore: 135
Identities = 64/87 (73%), Positives = 75/87 (86%), Gaps = 0/87 (0%) |
NCBI |
Show Blast
|
| XP_001751469.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-29 | Bitscore: 129
Identities = 61/85 (71%), Positives = 70/85 (82%), Gaps = 0/85 (0%) |
NCBI |
Show Blast
|
| NP_001062247.1 |
Os08g0517900 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-27 | Bitscore: 124
Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 0/87 (0%) |
NCBI |
Show Blast
|
| NP_200504.1 |
ribosomal protein S16 family protein [Arabidopsis thaliana]
Evalue: 1e-26 | Bitscore: 122
Identities = 57/100 (57%), Positives = 76/100 (76%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| AAM63199.1 |
30S ribosomal protein S16 [Arabidopsis thaliana]
Evalue: 1e-26 | Bitscore: 122
Identities = 57/100 (57%), Positives = 76/100 (76%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| NP_001063564.1 |
Os09g0498100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-26 | Bitscore: 122
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 5/96 (5%) |
NCBI |
Show Blast
|
| ACU13414.1 |
unknown [Glycine max]
Evalue: 4e-26 | Bitscore: 120
Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 5/100 (5%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A5UST8 |
30S ribosomal protein S16 OS=Roseiflexus sp. (strain RS-1) GN=rpsP PE=3 SV=1
Evalue: 5e-20 | Bitscore: 96
Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 3/83 (3%) |
SwissP |
Show Blast
|
| Q5GSA5 |
30S ribosomal protein S16 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rpsP PE=3 SV=1
Evalue: 2e-19 | Bitscore: 94
Identities = 43/73 (58%), Positives = 53/73 (72%) |
SwissP |
Show Blast
|
| A7NJT8 |
30S ribosomal protein S16 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpsP PE=3 SV=1
Evalue: 4e-19 | Bitscore: 93
Identities = 48/83 (57%), Positives = 59/83 (71%), Gaps = 3/83 (3%) |
SwissP |
Show Blast
|
| A8GY79 |
30S ribosomal protein S16 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsP PE=3 SV=1
Evalue: 1e-18 | Bitscore: 92
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 2/89 (2%) |
SwissP |
Show Blast
|
| Q1RGQ5 |
30S ribosomal protein S16 OS=Rickettsia bellii (strain RML369-C) GN=rpsP PE=3 SV=1
Evalue: 1e-18 | Bitscore: 92
Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 2/89 (2%) |
SwissP |
Show Blast
|
| Q2G8H4 |
30S ribosomal protein S16 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsP PE=3 SV=1
Evalue: 2e-18 | Bitscore: 90
Identities = 44/82 (53%), Positives = 61/82 (74%) |
SwissP |
Show Blast
|
| C0R3M3 |
30S ribosomal protein S16 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rpsP PE=3 SV=1
Evalue: 5e-18 | Bitscore: 89
Identities = 42/73 (57%), Positives = 53/73 (72%) |
SwissP |
Show Blast
|
| B3CPY0 |
30S ribosomal protein S16 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rpsP PE=3 SV=1
Evalue: 6e-18 | Bitscore: 89
Identities = 42/73 (57%), Positives = 53/73 (72%) |
SwissP |
Show Blast
|
| A9B0N4 |
30S ribosomal protein S16 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsP PE=3 SV=1
Evalue: 6e-18 | Bitscore: 89
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 3/83 (3%) |
SwissP |
Show Blast
|
| A4WNX7 |
30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1
Evalue: 1e-17 | Bitscore: 88
Identities = 41/82 (50%), Positives = 58/82 (70%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G56940.1 |
| Symbols: | ribosomal protein S16 family protein | chr5:23048105-23049426 FORWARD
Evalue: 4e-27 | Bitscore: 115
Identities = 57/100 (57%), Positives = 77/100 (77%), Gaps = 5/100 (5%) |
Tair |
Show Blast
|
| AT4G34620.1 |
| Symbols: SSR16 | SSR16 (ribosomal protein S16); structural constituent of ribosome | chr4:16535089-16536097 REVERSE
Evalue: 6e-23 | Bitscore: 102
Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 5/102 (4%) |
Tair |
Show Blast
|
| ATCG00050.1 |
| Symbols: RPS16 | Homologous to the bacterial ribosomal protein S16 | chrC:5084-6188 REVERSE
Evalue: 5e-07 | Bitscore: 49
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
