- Gene ID
- Ot10g02840
- Locus
- Ot10g02840
- Functional Description
- recombination protein (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom10
- Last Modified On
- 09 March 2010 8h27
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- recombination protein (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
2.
damaged DNA binding
3.
ATP binding
4.
ATP-dependent activity, acting on DNA
- Biological Process
-
1.
DNA metabolic process
2.
DNA repair
3.
DNA recombination
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR020588 |
DNA recombination/repair protein RecA/RadB, ATP-binding domain |
InterPro |
|
PTHR22942 |
RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
HMMPanther |
|
G3DSA:3.40.50.300 |
no description |
Gene3D |
|
SSF54752 |
RecA protein, C-terminal domain |
superfamily |
|
IPR003593 |
ATPase, AAA+ type, core |
InterPro |
|
SSF52540 |
P-loop containing nucleoside triphosphate hydrolases |
superfamily |
|
IPR013765 |
DNA recombination and repair protein RecA |
InterPro |
|
IPR020587 |
DNA recombination/repair protein RecA, monomer-monomer interface |
InterPro |
|
IPR001553 |
DNA recombination/repair protein, RecA/RadB |
InterPro |
|
G3DSA:3.30.250.10 |
no description |
Gene3D |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56241.1 |
recombination protein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 720
Identities = 396/396 (100%), Positives = 396/396 (100%), Gaps = 0/396 (0%) |
NCBI |
Show Blast
|
| XP_001420188.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-164 | Bitscore: 583
Identities = 305/346 (88%), Positives = 327/346 (94%), Gaps = 1/346 (0%) |
NCBI |
Show Blast
|
| XP_002503817.1 |
recA DNA recombinase [Micromonas sp. RCC299]
Evalue: 2e-149 | Bitscore: 533
Identities = 278/348 (79%), Positives = 310/348 (89%), Gaps = 4/348 (1%) |
NCBI |
Show Blast
|
| EEH60385.1 |
recA DNA recombinase [Micromonas pusilla CCMP1545]
Evalue: 9e-142 | Bitscore: 507
Identities = 270/337 (80%), Positives = 301/337 (89%), Gaps = 1/337 (0%) |
NCBI |
Show Blast
|
| YP_001018297.1 |
recombinase A [Prochlorococcus marinus str. MIT 9303] sp|A2CC22.1|RECA_PROM3 RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 1e-110 | Bitscore: 404
Identities = 209/328 (63%), Positives = 266/328 (81%), Gaps = 2/328 (0%) |
NCBI |
Show Blast
|
| NP_895554.1 |
recombinase A [Prochlorococcus marinus str. MIT 9313] sp|Q7V547.1|RECA_PROMM RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 2e-110 | Bitscore: 403
Identities = 209/328 (63%), Positives = 266/328 (81%), Gaps = 2/328 (0%) |
NCBI |
Show Blast
|
| NP_893679.1 |
recombinase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] sp|Q7UZU3.1|RECA_PROMP RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 3e-110 | Bitscore: 402
Identities = 208/345 (60%), Positives = 270/345 (78%), Gaps = 9/345 (2%) |
NCBI |
Show Blast
|
| YP_002371178.1 |
recombinase A [Cyanothece sp. PCC 8801]
Evalue: 5e-110 | Bitscore: 402
Identities = 210/327 (64%), Positives = 267/327 (81%), Gaps = 2/327 (0%) |
NCBI |
Show Blast
|
| YP_001733692.1 |
recA protein (recombinase A) [Synechococcus sp. PCC 7002] sp|P14582.1|RECA_SYNP2 RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 6e-110 | Bitscore: 401
Identities = 212/344 (61%), Positives = 269/344 (78%), Gaps = 2/344 (0%) |
NCBI |
Show Blast
|
| NP_926362.1 |
recombinase A [Gloeobacter violaceus PCC 7421] sp|Q7NFV8.1|RECA_GLOVI RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 7e-110 | Bitscore: 401
Identities = 208/324 (64%), Positives = 259/324 (79%), Gaps = 2/324 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK51198.1 |
unknown [environmental sequence]
Evalue: 1e-102 | Bitscore: 370
Identities = 190/329 (57%), Positives = 247/329 (75%), Gaps = 2/329 (0%) |
GOS |
Show Blast
|
| EAJ23273.1 |
unknown [environmental sequence]
Evalue: 1e-101 | Bitscore: 369
Identities = 190/329 (57%), Positives = 247/329 (75%), Gaps = 2/329 (0%) |
GOS |
Show Blast
|
| EAH45600.1 |
unknown [environmental sequence]
Evalue: 1e-101 | Bitscore: 369
Identities = 188/322 (58%), Positives = 245/322 (76%), Gaps = 2/322 (0%) |
GOS |
Show Blast
|
| EAK69387.1 |
unknown [environmental sequence]
Evalue: 1e-101 | Bitscore: 367
Identities = 192/329 (58%), Positives = 248/329 (75%), Gaps = 2/329 (0%) |
GOS |
Show Blast
|
| EAI25379.1 |
unknown [environmental sequence]
Evalue: 1e-100 | Bitscore: 364
Identities = 193/338 (57%), Positives = 253/338 (74%), Gaps = 4/338 (1%) |
GOS |
Show Blast
|
| EAI11430.1 |
unknown [environmental sequence]
Evalue: 1e-95 | Bitscore: 350
Identities = 181/299 (60%), Positives = 229/299 (76%), Gaps = 2/299 (0%) |
GOS |
Show Blast
|
| EAB74480.1 |
unknown [environmental sequence]
Evalue: 7e-91 | Bitscore: 333
Identities = 166/282 (58%), Positives = 216/282 (76%), Gaps = 2/282 (0%) |
GOS |
Show Blast
|
| EAJ33445.1 |
unknown [environmental sequence]
Evalue: 4e-88 | Bitscore: 324
Identities = 180/349 (51%), Positives = 240/349 (68%), Gaps = 4/349 (1%) |
GOS |
Show Blast
|
| EAI03693.1 |
unknown [environmental sequence]
Evalue: 4e-86 | Bitscore: 318
Identities = 161/325 (49%), Positives = 235/325 (72%), Gaps = 3/325 (0%) |
GOS |
Show Blast
|
| EAK25541.1 |
unknown [environmental sequence]
Evalue: 1e-85 | Bitscore: 316
Identities = 169/342 (49%), Positives = 235/342 (68%), Gaps = 3/342 (0%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56241.1 |
recombination protein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 720
Identities = 396/396 (100%), Positives = 396/396 (100%), Gaps = 0/396 (0%) |
NCBI |
Show Blast
|
| XP_001420188.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-164 | Bitscore: 583
Identities = 305/346 (88%), Positives = 327/346 (94%), Gaps = 1/346 (0%) |
NCBI |
Show Blast
|
| XP_002503817.1 |
recA DNA recombinase [Micromonas sp. RCC299]
Evalue: 2e-149 | Bitscore: 533
Identities = 278/348 (79%), Positives = 310/348 (89%), Gaps = 4/348 (1%) |
NCBI |
Show Blast
|
| EEH60385.1 |
recA DNA recombinase [Micromonas pusilla CCMP1545]
Evalue: 9e-142 | Bitscore: 507
Identities = 270/337 (80%), Positives = 301/337 (89%), Gaps = 1/337 (0%) |
NCBI |
Show Blast
|
| YP_001018297.1 |
recombinase A [Prochlorococcus marinus str. MIT 9303] sp|A2CC22.1|RECA_PROM3 RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 1e-110 | Bitscore: 404
Identities = 209/328 (63%), Positives = 266/328 (81%), Gaps = 2/328 (0%) |
NCBI |
Show Blast
|
| NP_895554.1 |
recombinase A [Prochlorococcus marinus str. MIT 9313] sp|Q7V547.1|RECA_PROMM RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 2e-110 | Bitscore: 403
Identities = 209/328 (63%), Positives = 266/328 (81%), Gaps = 2/328 (0%) |
NCBI |
Show Blast
|
| NP_893679.1 |
recombinase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] sp|Q7UZU3.1|RECA_PROMP RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 3e-110 | Bitscore: 402
Identities = 208/345 (60%), Positives = 270/345 (78%), Gaps = 9/345 (2%) |
NCBI |
Show Blast
|
| YP_002371178.1 |
recombinase A [Cyanothece sp. PCC 8801]
Evalue: 5e-110 | Bitscore: 402
Identities = 210/327 (64%), Positives = 267/327 (81%), Gaps = 2/327 (0%) |
NCBI |
Show Blast
|
| YP_001733692.1 |
recA protein (recombinase A) [Synechococcus sp. PCC 7002] sp|P14582.1|RECA_SYNP2 RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 6e-110 | Bitscore: 401
Identities = 212/344 (61%), Positives = 269/344 (78%), Gaps = 2/344 (0%) |
NCBI |
Show Blast
|
| NP_926362.1 |
recombinase A [Gloeobacter violaceus PCC 7421] sp|Q7NFV8.1|RECA_GLOVI RecName: Full=Protein recA; AltName: Full=Recombinase A
Evalue: 7e-110 | Bitscore: 401
Identities = 208/324 (64%), Positives = 259/324 (79%), Gaps = 2/324 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot08g01790 |
chrom08.0001 [303792..303881,303983..304367,304407..305194]
Evalue: 5e-07 | Bitscore: 50
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 29/249 (11%) |
Self |
Show Blast
|
| Ot11g01870 |
chrom11.0001 [320602..321654,321752..321814]
Evalue: 1e-06 | Bitscore: 49
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 28/249 (11%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q7UZU3 |
Protein recA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=recA PE=3 SV=1
Evalue: 1e-103 | Bitscore: 376
Identities = 195/345 (56%), Positives = 254/345 (73%), Gaps = 9/345 (2%) |
SwissP |
Show Blast
|
| B7JZS9 |
Protein recA OS=Cyanothece sp. (strain PCC 8801) GN=recA PE=3 SV=1
Evalue: 1e-103 | Bitscore: 376
Identities = 200/345 (57%), Positives = 256/345 (74%), Gaps = 2/345 (0%) |
SwissP |
Show Blast
|
| P14582 |
Protein recA OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=recA PE=3 SV=1
Evalue: 1e-103 | Bitscore: 375
Identities = 199/344 (57%), Positives = 253/344 (73%), Gaps = 2/344 (0%) |
SwissP |
Show Blast
|
| A2CC22 |
Protein recA OS=Prochlorococcus marinus (strain MIT 9303) GN=recA PE=3 SV=1
Evalue: 1e-103 | Bitscore: 375
Identities = 196/328 (59%), Positives = 250/328 (76%), Gaps = 2/328 (0%) |
SwissP |
Show Blast
|
| Q7V547 |
Protein recA OS=Prochlorococcus marinus (strain MIT 9313) GN=recA PE=3 SV=1
Evalue: 1e-103 | Bitscore: 375
Identities = 196/328 (59%), Positives = 250/328 (76%), Gaps = 2/328 (0%) |
SwissP |
Show Blast
|
| A8G766 |
Protein recA OS=Prochlorococcus marinus (strain MIT 9215) GN=recA PE=3 SV=1
Evalue: 1e-102 | Bitscore: 372
Identities = 191/332 (57%), Positives = 249/332 (75%), Gaps = 2/332 (0%) |
SwissP |
Show Blast
|
| Q7V9V8 |
Protein recA OS=Prochlorococcus marinus GN=recA PE=3 SV=1
Evalue: 1e-102 | Bitscore: 372
Identities = 198/338 (58%), Positives = 253/338 (74%), Gaps = 4/338 (1%) |
SwissP |
Show Blast
|
| A2BYU0 |
Protein recA OS=Prochlorococcus marinus (strain MIT 9515) GN=recA PE=3 SV=1
Evalue: 1e-102 | Bitscore: 371
Identities = 196/353 (55%), Positives = 256/353 (72%), Gaps = 4/353 (1%) |
SwissP |
Show Blast
|
| Q3AMM5 |
Protein recA OS=Synechococcus sp. (strain CC9605) GN=recA PE=3 SV=1
Evalue: 1e-102 | Bitscore: 371
Identities = 194/325 (59%), Positives = 248/325 (76%), Gaps = 2/325 (0%) |
SwissP |
Show Blast
|
| B7KLB5 |
Protein recA OS=Cyanothece sp. (strain PCC 7424) GN=recA PE=3 SV=1
Evalue: 1e-102 | Bitscore: 370
Identities = 194/327 (59%), Positives = 248/327 (75%), Gaps = 2/327 (0%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G79050.1 |
| Symbols: | DNA repair protein recA | chr1:29741977-29745033 REVERSE
Evalue: 1e-103 | Bitscore: 373
Identities = 189/330 (57%), Positives = 247/330 (74%), Gaps = 6/330 (1%) |
Tair |
Show Blast
|
| AT1G79050.2 |
| Symbols: | DNA repair protein recA | chr1:29742257-29745033 REVERSE
Evalue: 4e-86 | Bitscore: 315
Identities = 156/247 (63%), Positives = 201/247 (81%), Gaps = 6/247 (2%) |
Tair |
Show Blast
|
| AT2G19490.1 |
| Symbols: | recA family protein | chr2:8448814-8451088 FORWARD
Evalue: 7e-64 | Bitscore: 241
Identities = 154/343 (44%), Positives = 220/343 (64%), Gaps = 19/343 (5%) |
Tair |
Show Blast
|
| AT3G10140.1 |
| Symbols: RECA3 | RECA3 (RECA HOMOLOG 3); DNA binding / DNA-dependent ATPase | chr3:3134989-3137074 FORWARD
Evalue: 2e-46 | Bitscore: 182
Identities = 122/328 (37%), Positives = 190/328 (57%), Gaps = 8/328 (2%) |
Tair |
Show Blast
|
| AT3G32920.1 |
| Symbols: | recA family protein | chr3:13489112-13490426 REVERSE
Evalue: 1e-36 | Bitscore: 150
Identities = 94/199 (47%), Positives = 134/199 (67%), Gaps = 22/199 (11%) |
Tair |
Show Blast
|
| AT5G20850.1 |
| Symbols: RAD51, ATRAD51 | ATRAD51 (Arabidopsis thaliana Ras Associated with Diabetes protein 51); damaged DNA
Evalue: 7e-09 | Bitscore: 58
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 26/216 (12%) |
Tair |
Show Blast
|
| AT3G22880.1 |
| Symbols: DMC1, ARLIM15, ATDMC1 | ATDMC1 (RECA-LIKE GENE); ATP binding / DNA-dependent ATPase/ damaged DNA binding |
Evalue: 2e-07 | Bitscore: 53
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 25/213 (11%) |
Tair |
Show Blast
|
| AT1G07745.1 |
| Symbols: ATRAD51D, RAD51D, SSN1 | ATRAD51D/RAD51D/SSN1 (ARABIDOPSIS HOMOLOG OF RAD51 D); DNA binding |
Evalue: 0.0004 | Bitscore: 42
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 24/150 (16%) |
Tair |
Show Blast
|
| AT1G07745.2 |
| Symbols: ATRAD51D, RAD51D, SSN1 | ATRAD51D/RAD51D/SSN1 (ARABIDOPSIS HOMOLOG OF RAD51 D) | chr1:2400794-2402489
Evalue: 0.0005 | Bitscore: 42
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 24/150 (16%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
