- Gene ID
- Ot10g00820
- Locus
- Ot10g00820
- Functional Description
- WD40 repeat protein (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom10
- Last Modified On
- 09 March 2010 7h56
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- WD40 repeat protein (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR019782 |
WD40 repeat 2 |
InterPro |
|
IPR019775 |
WD40 repeat, conserved site |
InterPro |
|
IPR001680 |
WD40 repeat |
InterPro |
|
IPR006769 |
Protein of unknown function DUF607 |
InterPro |
|
IPR011046 |
WD40 repeat-like-containing domain |
InterPro |
|
PTHR19877 |
WD40 REPEAT PROTEIN |
HMMPanther |
|
IPR017986 |
WD40-repeat-containing domain |
InterPro |
|
IPR015943 |
WD40/YVTN repeat-like-containing domain |
InterPro |
|
IPR019781 |
WD40 repeat, subgroup |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56039.1 |
WD40 repeat protein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1106
Identities = 627/627 (100%), Positives = 627/627 (100%), Gaps = 0/627 (0%) |
NCBI |
Show Blast
|
| XP_001419915.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-134 | Bitscore: 484
Identities = 238/299 (79%), Positives = 245/299 (81%), Gaps = 39/299 (13%) |
NCBI |
Show Blast
|
| EEH60880.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-93 | Bitscore: 346
Identities = 175/292 (59%), Positives = 206/292 (70%), Gaps = 41/292 (14%) |
NCBI |
Show Blast
|
| XP_002503507.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-90 | Bitscore: 337
Identities = 170/296 (57%), Positives = 200/296 (67%), Gaps = 39/296 (13%) |
NCBI |
Show Blast
|
| XP_001419914.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-77 | Bitscore: 294
Identities = 143/234 (61%), Positives = 182/234 (77%), Gaps = 0/234 (0%) |
NCBI |
Show Blast
|
| AT1G15470.1 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr1:5315833-5317691 FORWARD
Evalue: 1e-78 | Bitscore: 290
Identities = 143/289 (49%), Positives = 181/289 (62%), Gaps = 40/289 (13%) |
Tair |
Show Blast
|
| XP_002285272.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-76 | Bitscore: 290
Identities = 146/296 (49%), Positives = 186/296 (62%), Gaps = 40/296 (13%) |
NCBI |
Show Blast
|
| AT3G15610.1 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr3:5291083-5292803 REVERSE
Evalue: 2e-77 | Bitscore: 287
Identities = 145/298 (48%), Positives = 186/298 (62%), Gaps = 42/298 (14%) |
Tair |
Show Blast
|
| XP_002298116.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-75 | Bitscore: 287
Identities = 145/295 (49%), Positives = 185/295 (62%), Gaps = 40/295 (13%) |
NCBI |
Show Blast
|
| NP_563978.1 |
transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
Evalue: 3e-75 | Bitscore: 287
Identities = 143/290 (49%), Positives = 181/290 (62%), Gaps = 40/290 (13%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD96246.1 |
unknown [environmental sequence]
Evalue: 9e-67 | Bitscore: 254
Identities = 117/127 (92%), Positives = 124/127 (97%) |
GOS |
Show Blast
|
| EAB69294.1 |
unknown [environmental sequence]
Evalue: 2e-21 | Bitscore: 103
Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 13/249 (5%) |
GOS |
Show Blast
|
| EAB07627.1 |
unknown [environmental sequence]
Evalue: 4e-17 | Bitscore: 89
Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 14/249 (5%) |
GOS |
Show Blast
|
| EAB85912.1 |
unknown [environmental sequence]
Evalue: 2e-15 | Bitscore: 84
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 13/195 (6%) |
GOS |
Show Blast
|
| EAD68306.1 |
unknown [environmental sequence]
Evalue: 2e-15 | Bitscore: 84
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 8/199 (4%) |
GOS |
Show Blast
|
| EAA93913.1 |
unknown [environmental sequence]
Evalue: 2e-12 | Bitscore: 73
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 17/201 (8%) |
GOS |
Show Blast
|
| EAC53389.1 |
unknown [environmental sequence]
Evalue: 2e-12 | Bitscore: 73
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 6/183 (3%) |
GOS |
Show Blast
|
| EAD41509.1 |
unknown [environmental sequence]
Evalue: 1e-10 | Bitscore: 67
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 13/205 (6%) |
GOS |
Show Blast
|
| EAJ29246.1 |
unknown [environmental sequence]
Evalue: 1e-09 | Bitscore: 65
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 9/189 (4%) |
GOS |
Show Blast
|
| EAC71077.1 |
unknown [environmental sequence]
Evalue: 1e-09 | Bitscore: 64
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 5/186 (2%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL56039.1 |
WD40 repeat protein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1106
Identities = 627/627 (100%), Positives = 627/627 (100%), Gaps = 0/627 (0%) |
NCBI |
Show Blast
|
| XP_001419915.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-134 | Bitscore: 484
Identities = 238/299 (79%), Positives = 245/299 (81%), Gaps = 39/299 (13%) |
NCBI |
Show Blast
|
| EEH60880.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-93 | Bitscore: 346
Identities = 175/292 (59%), Positives = 206/292 (70%), Gaps = 41/292 (14%) |
NCBI |
Show Blast
|
| XP_002503507.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-90 | Bitscore: 337
Identities = 170/296 (57%), Positives = 200/296 (67%), Gaps = 39/296 (13%) |
NCBI |
Show Blast
|
| XP_001419914.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-77 | Bitscore: 294
Identities = 143/234 (61%), Positives = 182/234 (77%), Gaps = 0/234 (0%) |
NCBI |
Show Blast
|
| XP_002285272.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-76 | Bitscore: 290
Identities = 146/296 (49%), Positives = 186/296 (62%), Gaps = 40/296 (13%) |
NCBI |
Show Blast
|
| XP_002298116.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-75 | Bitscore: 287
Identities = 145/295 (49%), Positives = 185/295 (62%), Gaps = 40/295 (13%) |
NCBI |
Show Blast
|
| NP_563978.1 |
transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
Evalue: 3e-75 | Bitscore: 287
Identities = 143/290 (49%), Positives = 181/290 (62%), Gaps = 40/290 (13%) |
NCBI |
Show Blast
|
| XP_002517562.1 |
serine-threonine kinase receptor-associated protein, putative [Ricinus communis]
Evalue: 7e-75 | Bitscore: 286
Identities = 144/296 (48%), Positives = 185/296 (62%), Gaps = 40/296 (13%) |
NCBI |
Show Blast
|
| BAD32940.1 |
putative WD-40 repeat protein [Oryza sativa Japonica Group]
Evalue: 1e-74 | Bitscore: 285
Identities = 145/300 (48%), Positives = 184/300 (61%), Gaps = 40/300 (13%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot06g00590 |
chrom06.0001 [80678..81649]
Evalue: 2e-14 | Bitscore: 75
Identities = 79/315 (25%), Positives = 126/315 (40%), Gaps = 72/315 (22%) |
Self |
Show Blast
|
| Ot03g04300 |
chrom03.0001 [700800..700925,701010..701927]
Evalue: 3e-10 | Bitscore: 62
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 11/203 (5%) |
Self |
Show Blast
|
| Ot09g03670 |
chrom09.0001 [543124..544173] incomplete
Evalue: 5e-09 | Bitscore: 58
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 13/203 (6%) |
Self |
Show Blast
|
| Ot10g01140 |
chrom10.0001 [185725..187584]
Evalue: 2e-07 | Bitscore: 52
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 4/168 (2%) |
Self |
Show Blast
|
| Ot07g02200 |
chrom07.0001 [352400..354632,354696..355828]
Evalue: 2e-07 | Bitscore: 52
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 9/235 (3%) |
Self |
Show Blast
|
| Ot10g00230 |
chrom10.0001 [48365..49298,49329..49408]
Evalue: 5e-07 | Bitscore: 51
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 33/218 (15%) |
Self |
Show Blast
|
| Ot01g05180 |
chrom01.0001 [850947..852182,852290..852784]
Evalue: 5e-07 | Bitscore: 51
Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 32/215 (14%) |
Self |
Show Blast
|
| Ot14g01570 |
chrom14.0001 [219120..221021]
Evalue: 2e-06 | Bitscore: 49
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 6/112 (5%) |
Self |
Show Blast
|
| Ot05g00380 |
chrom05.0001 [55103..56707]
Evalue: 2e-06 | Bitscore: 48
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 6/137 (4%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q54LT8 |
Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1
Evalue: 2e-61 | Bitscore: 237
Identities = 117/290 (40%), Positives = 174/290 (60%), Gaps = 42/290 (14%) |
SwissP |
Show Blast
|
| Q5ZL33 |
Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2
Evalue: 7e-58 | Bitscore: 225
Identities = 122/294 (41%), Positives = 166/294 (56%), Gaps = 41/294 (13%) |
SwissP |
Show Blast
|
| Q9Y3F4 |
Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1
Evalue: 1e-57 | Bitscore: 225
Identities = 120/295 (40%), Positives = 166/295 (56%), Gaps = 41/295 (13%) |
SwissP |
Show Blast
|
| Q9Z1Z2 |
Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2
Evalue: 1e-57 | Bitscore: 224
Identities = 120/295 (40%), Positives = 167/295 (56%), Gaps = 41/295 (13%) |
SwissP |
Show Blast
|
| Q5XIG8 |
Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1
Evalue: 2e-57 | Bitscore: 223
Identities = 120/295 (40%), Positives = 166/295 (56%), Gaps = 41/295 (13%) |
SwissP |
Show Blast
|
| Q5E959 |
Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1
Evalue: 3e-57 | Bitscore: 223
Identities = 120/295 (40%), Positives = 166/295 (56%), Gaps = 41/295 (13%) |
SwissP |
Show Blast
|
| Q00808 |
Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1
Evalue: 5e-19 | Bitscore: 96
Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 14/252 (5%) |
SwissP |
Show Blast
|
| O88879 |
Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2
Evalue: 5e-15 | Bitscore: 83
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 18/248 (7%) |
SwissP |
Show Blast
|
| Q8BHD1 |
WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1
Evalue: 5e-15 | Bitscore: 83
Identities = 75/275 (27%), Positives = 120/275 (43%), Gaps = 32/275 (11%) |
SwissP |
Show Blast
|
| Q8YRI1 |
Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1
Evalue: 7e-15 | Bitscore: 82
Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 21/253 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G15470.1 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr1:5315833-5317691 FORWARD
Evalue: 1e-78 | Bitscore: 290
Identities = 143/289 (49%), Positives = 181/289 (62%), Gaps = 40/289 (13%) |
Tair |
Show Blast
|
| AT3G15610.1 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr3:5291083-5292803 REVERSE
Evalue: 2e-77 | Bitscore: 287
Identities = 145/298 (48%), Positives = 186/298 (62%), Gaps = 42/298 (14%) |
Tair |
Show Blast
|
| AT1G52730.2 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr1:19646534-19648646 FORWARD
Evalue: 6e-75 | Bitscore: 278
Identities = 141/296 (47%), Positives = 182/296 (61%), Gaps = 40/296 (13%) |
Tair |
Show Blast
|
| AT1G52730.1 |
| Symbols: | transducin family protein / WD-40 repeat family protein | chr1:19646534-19648646 FORWARD
Evalue: 6e-75 | Bitscore: 278
Identities = 141/296 (47%), Positives = 182/296 (61%), Gaps = 40/296 (13%) |
Tair |
Show Blast
|
| AT1G09575.1 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G57610.2); similar to unknown protein
Evalue: 9e-25 | Bitscore: 112
Identities = 60/172 (34%), Positives = 98/172 (56%), Gaps = 9/172 (5%) |
Tair |
Show Blast
|
| AT1G57610.1 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09575.1); similar to unnamed protein product
Evalue: 4e-23 | Bitscore: 106
Identities = 57/175 (32%), Positives = 100/175 (57%), Gaps = 7/175 (4%) |
Tair |
Show Blast
|
| AT1G57610.2 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09575.1); similar to unnamed protein product
Evalue: 4e-23 | Bitscore: 106
Identities = 57/175 (32%), Positives = 100/175 (57%), Gaps = 7/175 (4%) |
Tair |
Show Blast
|
| AT5G66650.1 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23790.1); similar to unnamed protein product
Evalue: 5e-17 | Bitscore: 86
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 7/181 (3%) |
Tair |
Show Blast
|
| AT4G36820.1 |
| Symbols: | transcription factor | chr4:17346893-17347998 FORWARD
Evalue: 2e-16 | Bitscore: 84
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 8/165 (4%) |
Tair |
Show Blast
|
| AT1G57610.3 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09575.1); similar to unnamed protein product
Evalue: 2e-15 | Bitscore: 81
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 7/125 (5%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST00640 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 134281..134738 |
Strand + |
|
