- Gene ID
- Ot09g04370
- Locus
- Ot09g04370
- Functional Description
- PSI-associated light-harvesting chlorophyll a/b binding protein, (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom09
- Last Modified On
- 09 March 2010 7h40
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- PSI-associated light-harvesting chlorophyll a/b binding protein, (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
membrane
- Molecular Function
-
n/a
- Biological Process
-
1.
photosynthesis, light harvesting
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF103511 |
Chlorophyll a-b binding protein |
superfamily |
|
PF00504 |
Chloroa_b-bind |
HMMPfam |
|
IPR001344 |
Chlorophyll A-B binding protein |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27545.1 |
chloroplast light-harvesting complex I protein precursor Lhca2 [Ostreococcus tauri]
Evalue: 1e-121 | Bitscore: 439
Identities = 242/242 (100%), Positives = 242/242 (100%), Gaps = 0/242 (0%) |
NCBI |
Show Blast
|
| XP_001419664.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-98 | Bitscore: 361
Identities = 177/204 (86%), Positives = 186/204 (91%), Gaps = 0/204 (0%) |
NCBI |
Show Blast
|
| XP_002505087.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 4e-73 | Bitscore: 278
Identities = 142/203 (69%), Positives = 158/203 (77%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| AAY27540.1 |
chloroplast light-harvesting complex I protein precursor Lhca4 [Ostreococcus tauri]
Evalue: 4e-57 | Bitscore: 224
Identities = 119/205 (58%), Positives = 145/205 (70%), Gaps = 4/205 (1%) |
NCBI |
Show Blast
|
| Ot02g05720 |
chrom02.0001 [683813..683847,684073..684778] inframe stop codon incomplete
Evalue: 1e-58 | Bitscore: 221
Identities = 115/206 (55%), Positives = 140/206 (67%), Gaps = 4/206 (1%) |
Self |
Show Blast
|
| XP_002514914.1 |
chlorophyll A/B binding protein, putative [Ricinus communis]
Evalue: 1e-55 | Bitscore: 220
Identities = 116/207 (56%), Positives = 143/207 (69%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| CAA41406.1 |
Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Evalue: 2e-55 | Bitscore: 219
Identities = 116/204 (56%), Positives = 140/204 (68%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| NP_001147224.1 |
chlorophyll a-b binding protein [Zea mays]
Evalue: 3e-55 | Bitscore: 219
Identities = 116/204 (56%), Positives = 144/204 (70%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| XP_002277906.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-55 | Bitscore: 218
Identities = 115/207 (55%), Positives = 141/207 (68%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC81111.1 |
unknown [environmental sequence]
Evalue: 3e-23 | Bitscore: 108
Identities = 72/157 (45%), Positives = 85/157 (54%), Gaps = 12/157 (7%) |
GOS |
Show Blast
|
| EAJ62839.1 |
unknown [environmental sequence]
Evalue: 7e-09 | Bitscore: 60
Identities = 60/200 (30%), Positives = 86/200 (43%), Gaps = 50/200 (25%) |
GOS |
Show Blast
|
| EAE34011.1 |
unknown [environmental sequence]
Evalue: 3e-05 | Bitscore: 48
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 37/144 (25%) |
GOS |
Show Blast
|
| EAH53295.1 |
unknown [environmental sequence]
Evalue: 0.0002 | Bitscore: 45
Identities = 24/57 (42%), Positives = 31/57 (54%) |
GOS |
Show Blast
|
| EAB35016.1 |
unknown [environmental sequence]
Evalue: 0.0007 | Bitscore: 43
Identities = 24/57 (42%), Positives = 30/57 (52%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27545.1 |
chloroplast light-harvesting complex I protein precursor Lhca2 [Ostreococcus tauri]
Evalue: 1e-121 | Bitscore: 439
Identities = 242/242 (100%), Positives = 242/242 (100%), Gaps = 0/242 (0%) |
NCBI |
Show Blast
|
| XP_001419664.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-98 | Bitscore: 361
Identities = 177/204 (86%), Positives = 186/204 (91%), Gaps = 0/204 (0%) |
NCBI |
Show Blast
|
| XP_002505087.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 4e-73 | Bitscore: 278
Identities = 142/203 (69%), Positives = 158/203 (77%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| AAY27540.1 |
chloroplast light-harvesting complex I protein precursor Lhca4 [Ostreococcus tauri]
Evalue: 4e-57 | Bitscore: 224
Identities = 119/205 (58%), Positives = 145/205 (70%), Gaps = 4/205 (1%) |
NCBI |
Show Blast
|
| XP_002514914.1 |
chlorophyll A/B binding protein, putative [Ricinus communis]
Evalue: 1e-55 | Bitscore: 220
Identities = 116/207 (56%), Positives = 143/207 (69%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| CAA41406.1 |
Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Evalue: 2e-55 | Bitscore: 219
Identities = 116/204 (56%), Positives = 140/204 (68%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| NP_001147224.1 |
chlorophyll a-b binding protein [Zea mays]
Evalue: 3e-55 | Bitscore: 219
Identities = 116/204 (56%), Positives = 144/204 (70%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| XP_002277906.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-55 | Bitscore: 218
Identities = 115/207 (55%), Positives = 141/207 (68%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| P10708 |
RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor
Evalue: 4e-55 | Bitscore: 218
Identities = 115/207 (55%), Positives = 145/207 (70%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| CAA57492.1 |
Type II chlorophyll a/b binding protein from photosystem I [Pisum sativum]
Evalue: 4e-55 | Bitscore: 218
Identities = 114/207 (55%), Positives = 145/207 (70%), Gaps = 3/207 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot02g05720 |
chrom02.0001 [683813..683847,684073..684778] inframe stop codon incomplete
Evalue: 1e-58 | Bitscore: 221
Identities = 115/206 (55%), Positives = 140/206 (67%), Gaps = 4/206 (1%) |
Self |
Show Blast
|
| Ot18g01370 |
chrom18.0001 [211282..211392,211687..212394]
Evalue: 1e-32 | Bitscore: 134
Identities = 88/197 (44%), Positives = 107/197 (54%), Gaps = 19/197 (9%) |
Self |
Show Blast
|
| Ot05g03910 |
chrom05.0001 [618438..618442,618725..619298] inframe stop codon
Evalue: 7e-24 | Bitscore: 105
Identities = 73/188 (38%), Positives = 97/188 (51%), Gaps = 25/188 (13%) |
Self |
Show Blast
|
| Ot14g01370 |
chrom14.0001 [192073..192355,192840..193507]
Evalue: 4e-21 | Bitscore: 96
Identities = 79/214 (36%), Positives = 102/214 (47%), Gaps = 28/214 (13%) |
Self |
Show Blast
|
| Ot11g01060 |
chrom11.0001 [188762..189850]
Evalue: 3e-20 | Bitscore: 93
Identities = 73/199 (36%), Positives = 95/199 (47%), Gaps = 34/199 (17%) |
Self |
Show Blast
|
| Ot03g04770 |
chrom03.0001 [783250..783821,783973..784042]
Evalue: 2e-14 | Bitscore: 74
Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 27/178 (15%) |
Self |
Show Blast
|
| Ot01g04850 |
chrom01.0001 [789392..790024,790190..790270,790350..790530,
Evalue: 7e-10 | Bitscore: 58
Identities = 58/171 (33%), Positives = 76/171 (44%), Gaps = 31/171 (18%) |
Self |
Show Blast
|
| Ot16g02550 |
chrom16.0001 [393776..394192]
Evalue: 2e-06 | Bitscore: 47
Identities = 47/153 (30%), Positives = 61/153 (39%), Gaps = 37/153 (24%) |
Self |
Show Blast
|
| Ot02g07190 |
chrom02.0001 [968674..969111] inframe stop codon incomplete
Evalue: 4e-05 | Bitscore: 43
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P10708 |
Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
Evalue: 1e-54 | Bitscore: 213
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 3/207 (1%) |
SwissP |
Show Blast
|
| P13869 |
Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
Evalue: 3e-53 | Bitscore: 208
Identities = 109/207 (52%), Positives = 135/207 (65%), Gaps = 3/207 (1%) |
SwissP |
Show Blast
|
| P27521 |
Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
Evalue: 3e-50 | Bitscore: 198
Identities = 99/195 (50%), Positives = 129/195 (66%), Gaps = 5/195 (2%) |
SwissP |
Show Blast
|
| Q9SQL2 |
Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
Evalue: 1e-46 | Bitscore: 186
Identities = 96/195 (49%), Positives = 127/195 (65%), Gaps = 5/195 (2%) |
SwissP |
Show Blast
|
| Q36718 |
Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1
Evalue: 6e-38 | Bitscore: 157
Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 8/191 (4%) |
SwissP |
Show Blast
|
| P27522 |
Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
Evalue: 1e-35 | Bitscore: 149
Identities = 95/213 (44%), Positives = 117/213 (54%), Gaps = 18/213 (8%) |
SwissP |
Show Blast
|
| Q32904 |
Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1
Evalue: 7e-35 | Bitscore: 147
Identities = 90/215 (41%), Positives = 118/215 (54%), Gaps = 18/215 (8%) |
SwissP |
Show Blast
|
| Q9SDM1 |
Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
Evalue: 4e-26 | Bitscore: 118
Identities = 80/205 (39%), Positives = 100/205 (48%), Gaps = 39/205 (19%) |
SwissP |
Show Blast
|
| P12360 |
Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
Evalue: 7e-23 | Bitscore: 107
Identities = 77/200 (38%), Positives = 97/200 (48%), Gaps = 29/200 (14%) |
SwissP |
Show Blast
|
| P27494 |
Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1
Evalue: 1e-22 | Bitscore: 107
Identities = 78/206 (37%), Positives = 98/206 (47%), Gaps = 17/206 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G61470.1 |
| Symbols: LHCA2 | LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding | chr3:22756711-22758007
Evalue: 4e-54 | Bitscore: 207
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 3/207 (1%) |
Tair |
Show Blast
|
| AT3G47470.1 |
| Symbols: CAB4, LHCA4 | LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding |
Evalue: 3e-51 | Bitscore: 198
Identities = 99/195 (50%), Positives = 129/195 (66%), Gaps = 5/195 (2%) |
Tair |
Show Blast
|
| AT1G19150.1 |
| Symbols: LHCA2*1, LHCA6 | LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding |
Evalue: 3e-50 | Bitscore: 194
Identities = 99/204 (48%), Positives = 130/204 (63%), Gaps = 3/204 (1%) |
Tair |
Show Blast
|
| AT1G45474.2 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 9e-40 | Bitscore: 160
Identities = 88/198 (44%), Positives = 117/198 (59%), Gaps = 4/198 (2%) |
Tair |
Show Blast
|
| AT1G45474.1 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 9e-40 | Bitscore: 160
Identities = 88/198 (44%), Positives = 117/198 (59%), Gaps = 4/198 (2%) |
Tair |
Show Blast
|
| AT1G61520.1 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding | chr1:22703817-22704814
Evalue: 1e-35 | Bitscore: 146
Identities = 94/214 (43%), Positives = 119/214 (55%), Gaps = 20/214 (9%) |
Tair |
Show Blast
|
| AT1G61520.2 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3) | chr1:22704158-22704814 FORWARD
Evalue: 1e-30 | Bitscore: 129
Identities = 86/195 (44%), Positives = 108/195 (55%), Gaps = 20/195 (10%) |
Tair |
Show Blast
|
| AT3G54890.1 |
| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20350684-20351900 REVERSE
Evalue: 1e-24 | Bitscore: 109
Identities = 79/200 (39%), Positives = 98/200 (49%), Gaps = 29/200 (14%) |
Tair |
Show Blast
|
| AT1G76570.1 |
| Symbols: | chlorophyll A-B binding family protein | chr1:28734026-28735648 FORWARD
Evalue: 2e-22 | Bitscore: 102
Identities = 80/214 (37%), Positives = 100/214 (46%), Gaps = 23/214 (10%) |
Tair |
Show Blast
|
| AT1G29930.1 |
| Symbols: AB140, CAB140, LHCB1.3, CAB1 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
Evalue: 5e-22 | Bitscore: 101
Identities = 73/197 (37%), Positives = 99/197 (50%), Gaps = 15/197 (7%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
