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Ostreococcus tauri


Gene ID
Ot09g03940
Locus
Ot09g03940
Functional Description
GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
Gene Type
protein-coding gene
Contig
chrom09
Last Modified On
09 March 2010 7h33
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
GTP binding

Biological Process
1.
small GTPase mediated signal transduction

2.
protein transport

Protein Domains 


Domain IDDescriptionDatabase
IPR013753 Ras InterPro
G3DSA:3.40.50.300 no description Gene3D
IPR001806 Ras GTPase InterPro
IPR005225 Small GTP-binding protein InterPro
IPR020851 Small GTPase InterPro
IPR003579 Ras small GTPase, Rab type InterPro
PTHR11708 RAS-RELATED GTPASE HMMPanther
SSF52540 P-loop containing nucleoside triphosphate hydrolases superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL55553.1 ras-related protein RAB-5 (ISS) [Ostreococcus tauri]
Evalue: 9e-83 | Bitscore: 310
Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%)
NCBI
Show Blast
XP_001419641.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-35 | Bitscore: 153
Identities = 98/179 (54%), Positives = 108/179 (60%), Gaps = 22/179 (12%)
NCBI
Show Blast
CBH16464.1 GTP binding protein, putative; ras-related protein rab-5 [Trypanosoma brucei gambiense DAL972]
Evalue: 1e-29 | Bitscore: 134
Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
NCBI
Show Blast
XP_819942.1 ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 2e-29 | Bitscore: 133
Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 10/175 (5%)
NCBI
Show Blast
XP_827782.1 Ras-related protein Rab-5 [Trypanosoma brucei TREU927]
Evalue: 3e-29 | Bitscore: 132
Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 6/175 (3%)
NCBI
Show Blast
XP_809457.1 ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 3e-29 | Bitscore: 132
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 11/175 (6%)
NCBI
Show Blast
XP_001759627.1 Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 4e-29 | Bitscore: 132
Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 25/180 (13%)
NCBI
Show Blast
pdb|2EFC|B Chain B, Ara7-GdpATVPS9A pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
Evalue: 7e-29 | Bitscore: 131
Identities = 79/176 (44%), Positives = 104/176 (59%), Gaps = 22/176 (12%)
NCBI
Show Blast
NP_982366.1 AAL176Cp [Ashbya gossypii ATCC 10895]
Evalue: 7e-29 | Bitscore: 131
Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 20/182 (10%)
NCBI
Show Blast
AAC46991.1 ras-related protein RAB-5 [Trypanosoma brucei rhodesiense]
Evalue: 1e-28 | Bitscore: 130
Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 6/175 (3%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
OT09G03940
Redo Blast
CDS Length
774 nucleotides
CDS Sequence

Protein 

Locus ID
OT09G03940
Redo Blast
Protein Length
258 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a