- Gene ID
- Ot09g03940
- Locus
- Ot09g03940
- Functional Description
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Gene Type
- protein-coding gene
- Contig
- chrom09
- Last Modified On
- 09 March 2010 7h33
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
GTP binding
- Biological Process
-
1.
small GTPase mediated signal transduction
2.
protein transport
Protein Domains
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
CAL55553.1 |
ras-related protein RAB-5 (ISS) [Ostreococcus tauri]
Evalue: 9e-83 | Bitscore: 310 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%) |
NCBI |
Show Blast
|
XP_001419641.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-35 | Bitscore: 153 Identities = 98/179 (54%), Positives = 108/179 (60%), Gaps = 22/179 (12%) |
NCBI |
Show Blast
|
CBH16464.1 |
GTP binding protein, putative; ras-related protein rab-5 [Trypanosoma brucei gambiense DAL972]
Evalue: 1e-29 | Bitscore: 134 Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 6/178 (3%) |
NCBI |
Show Blast
|
XP_819942.1 |
ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 2e-29 | Bitscore: 133 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 10/175 (5%) |
NCBI |
Show Blast
|
XP_827782.1 |
Ras-related protein Rab-5 [Trypanosoma brucei TREU927]
Evalue: 3e-29 | Bitscore: 132 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 6/175 (3%) |
NCBI |
Show Blast
|
XP_809457.1 |
ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 3e-29 | Bitscore: 132 Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 11/175 (6%) |
NCBI |
Show Blast
|
XP_001759627.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 4e-29 | Bitscore: 132 Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 25/180 (13%) |
NCBI |
Show Blast
|
pdb|2EFC|B |
Chain B, Ara7-GdpATVPS9A pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
Evalue: 7e-29 | Bitscore: 131 Identities = 79/176 (44%), Positives = 104/176 (59%), Gaps = 22/176 (12%) |
NCBI |
Show Blast
|
NP_982366.1 |
AAL176Cp [Ashbya gossypii ATCC 10895]
Evalue: 7e-29 | Bitscore: 131 Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 20/182 (10%) |
NCBI |
Show Blast
|
AAC46991.1 |
ras-related protein RAB-5 [Trypanosoma brucei rhodesiense]
Evalue: 1e-28 | Bitscore: 130 Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 6/175 (3%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
EAB57280.1 |
unknown [environmental sequence]
Evalue: 3e-21 | Bitscore: 101 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 22/169 (13%) |
GOS |
Show Blast
|
EAJ10721.1 |
unknown [environmental sequence]
Evalue: 6e-21 | Bitscore: 100 Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 22/167 (13%) |
GOS |
Show Blast
|
EAC60855.1 |
unknown [environmental sequence]
Evalue: 5e-17 | Bitscore: 87 Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 21/179 (11%) |
GOS |
Show Blast
|
EAC93829.1 |
unknown [environmental sequence]
Evalue: 1e-16 | Bitscore: 86 Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 22/172 (12%) |
GOS |
Show Blast
|
EAK45458.1 |
unknown [environmental sequence]
Evalue: 5e-14 | Bitscore: 77 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 21/175 (12%) |
GOS |
Show Blast
|
EAK24025.1 |
unknown [environmental sequence]
Evalue: 3e-12 | Bitscore: 71 Identities = 56/178 (31%), Positives = 76/178 (42%), Gaps = 25/178 (14%) |
GOS |
Show Blast
|
EAC00141.1 |
unknown [environmental sequence]
Evalue: 8e-12 | Bitscore: 70 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 20/133 (15%) |
GOS |
Show Blast
|
EAD89932.1 |
unknown [environmental sequence]
Evalue: 1e-11 | Bitscore: 69 Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 3/108 (2%) |
GOS |
Show Blast
|
EAD71502.1 |
unknown [environmental sequence]
Evalue: 3e-11 | Bitscore: 68 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 2/109 (1%) |
GOS |
Show Blast
|
EAJ90355.1 |
unknown [environmental sequence]
Evalue: 9e-09 | Bitscore: 60 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 20/117 (17%) |
GOS |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
CAL55553.1 |
ras-related protein RAB-5 (ISS) [Ostreococcus tauri]
Evalue: 9e-83 | Bitscore: 310 Identities = 257/257 (100%), Positives = 257/257 (100%), Gaps = 0/257 (0%) |
NCBI |
Show Blast
|
XP_001419641.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-35 | Bitscore: 153 Identities = 98/179 (54%), Positives = 108/179 (60%), Gaps = 22/179 (12%) |
NCBI |
Show Blast
|
CBH16464.1 |
GTP binding protein, putative; ras-related protein rab-5 [Trypanosoma brucei gambiense DAL972]
Evalue: 1e-29 | Bitscore: 134 Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 6/178 (3%) |
NCBI |
Show Blast
|
XP_819942.1 |
ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 2e-29 | Bitscore: 133 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 10/175 (5%) |
NCBI |
Show Blast
|
XP_827782.1 |
Ras-related protein Rab-5 [Trypanosoma brucei TREU927]
Evalue: 3e-29 | Bitscore: 132 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 6/175 (3%) |
NCBI |
Show Blast
|
XP_809457.1 |
ras-related protein rab-5 [Trypanosoma cruzi strain CL Brener]
Evalue: 3e-29 | Bitscore: 132 Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 11/175 (6%) |
NCBI |
Show Blast
|
XP_001759627.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 4e-29 | Bitscore: 132 Identities = 81/180 (45%), Positives = 106/180 (58%), Gaps = 25/180 (13%) |
NCBI |
Show Blast
|
pdb|2EFC|B |
Chain B, Ara7-GdpATVPS9A pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
Evalue: 7e-29 | Bitscore: 131 Identities = 79/176 (44%), Positives = 104/176 (59%), Gaps = 22/176 (12%) |
NCBI |
Show Blast
|
NP_982366.1 |
AAL176Cp [Ashbya gossypii ATCC 10895]
Evalue: 7e-29 | Bitscore: 131 Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 20/182 (10%) |
NCBI |
Show Blast
|
AAC46991.1 |
ras-related protein RAB-5 [Trypanosoma brucei rhodesiense]
Evalue: 1e-28 | Bitscore: 130 Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 6/175 (3%) |
NCBI |
Show Blast
|
No hits found against database O.RCC809 with an e-value better than 1e-3. |
No hits found against database O.luci with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 6e-22 | Bitscore: 99 Identities = 65/173 (37%), Positives = 88/173 (50%), Gaps = 22/173 (12%) |
Self |
Show Blast
|
Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 3e-18 | Bitscore: 87 Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 22/172 (12%) |
Self |
Show Blast
|
Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 2e-15 | Bitscore: 77 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 21/175 (12%) |
Self |
Show Blast
|
Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 2e-13 | Bitscore: 70 Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 25/180 (13%) |
Self |
Show Blast
|
Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 2e-12 | Bitscore: 67 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 27/167 (16%) |
Self |
Show Blast
|
Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 3e-12 | Bitscore: 67 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%) |
Self |
Show Blast
|
Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 2e-10 | Bitscore: 61 Identities = 54/191 (28%), Positives = 76/191 (39%), Gaps = 44/191 (23%) |
Self |
Show Blast
|
Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 2e-08 | Bitscore: 53 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%) |
Self |
Show Blast
|
Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 2e-05 | Bitscore: 44 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
P31582 |
Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1
Evalue: 4e-26 | Bitscore: 118 Identities = 71/175 (40%), Positives = 96/175 (54%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
P36017 |
Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1
Evalue: 3e-25 | Bitscore: 115 Identities = 71/182 (39%), Positives = 96/182 (52%), Gaps = 25/182 (13%) |
SwissP |
Show Blast
|
Q06AU6 |
Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Evalue: 3e-25 | Bitscore: 115 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
P29687 |
Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Evalue: 5e-25 | Bitscore: 114 Identities = 71/175 (40%), Positives = 92/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
Q0IIG7 |
Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Evalue: 6e-25 | Bitscore: 114 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
P18066 |
Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Evalue: 8e-25 | Bitscore: 114 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
P20339 |
Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Evalue: 8e-25 | Bitscore: 114 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
P61271 |
Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1
Evalue: 8e-25 | Bitscore: 114 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
Q9CQD1 |
Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Evalue: 1e-24 | Bitscore: 113 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
Q98932 |
Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Evalue: 1e-24 | Bitscore: 113 Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) |
SwissP |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
AT3G54840.1 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6; GTP binding | chr3:20329575-20331760 FORWARD
Evalue: 3e-28 | Bitscore: 122 Identities = 72/179 (40%), Positives = 94/179 (52%), Gaps = 21/179 (11%) |
Tair |
Show Blast
|
AT3G54840.2 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6 | chr3:20329575-20331715 FORWARD
Evalue: 1e-27 | Bitscore: 120 Identities = 71/176 (40%), Positives = 92/176 (52%), Gaps = 21/176 (11%) |
Tair |
Show Blast
|
AT5G45130.1 |
| Symbols: AtRab5A, AtRABF2a, Rha1, RHA1 | RHA1 | chr5:18261722-18263287 FORWARD
Evalue: 4e-27 | Bitscore: 118 Identities = 71/175 (40%), Positives = 96/175 (54%), Gaps = 22/175 (12%) |
Tair |
Show Blast
|
AT4G19640.1 |
| Symbols: Ara-7, AtRABF2b, AtRab5B, ARA7 | ARA7; GTP binding | chr4:10687451-10689459 REVERSE
Evalue: 4e-27 | Bitscore: 118 Identities = 73/175 (41%), Positives = 95/175 (54%), Gaps = 22/175 (12%) |
Tair |
Show Blast
|
AT4G39990.1 |
| Symbols: ATRABA4B, ATRAB11G, ATGB3 | ATGB3/ATRAB11G/ATRABA4B (GTP-BINDING PROTEIN 3); GTP binding |
Evalue: 2e-22 | Bitscore: 102 Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 26/180 (14%) |
Tair |
Show Blast
|
AT3G07410.1 |
| Symbols: AtRABA5b | AtRABA5b (Arabidopsis Rab GTPase homolog A5b); GTP binding | chr3:2372491-2373488 REVERSE
Evalue: 9e-22 | Bitscore: 100 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 22/178 (12%) |
Tair |
Show Blast
|
AT5G65270.1 |
| Symbols: AtRABA4a | AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding | chr5:26100663-26101776 FORWARD
Evalue: 9e-22 | Bitscore: 100 Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 26/177 (14%) |
Tair |
Show Blast
|
AT5G59150.1 |
| Symbols: AtRABA2d | AtRABA2d (Arabidopsis Rab GTPase homolog A2d); GTP binding | chr5:23894084-23895470 FORWARD
Evalue: 8e-21 | Bitscore: 97 Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 22/178 (12%) |
Tair |
Show Blast
|
AT3G46830.1 |
| Symbols: AtRab11A, AtRABA2c | AtRABA2c/AtRab11A (Arabidopsis Rab GTPase homolog A2c); GTP binding |
Evalue: 9e-21 | Bitscore: 97 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 23/180 (12%) |
Tair |
Show Blast
|
AT5G47520.1 |
| Symbols: AtRABA5a | AtRABA5a (Arabidopsis Rab GTPase homolog A5a); GTP binding | chr5:19294823-19295593 REVERSE
Evalue: 1e-20 | Bitscore: 97 Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 22/178 (12%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|