- Gene ID
- Ot09g00260
- Locus
- Ot09g00260
- Functional Description
- tRNA/rRNA methyltransferase (SpoU) family protein (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom09
- Last Modified On
- 09 March 2010 6h36
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- tRNA/rRNA methyltransferase (SpoU) family protein (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
RNA binding
2.
RNA methyltransferase activity
- Biological Process
-
1.
RNA processing
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR001537 |
tRNA/rRNA methyltransferase, SpoU |
InterPro |
|
PTHR12029 |
RNA METHYLTRANSFERASE |
HMMPanther |
|
G3DSA:3.40.1280.10 |
no description |
Gene3D |
|
SSF75217 |
alpha/beta knot |
superfamily |
|
IPR016914 |
S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase, SpoU, predicted |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55185.1 |
tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
Evalue: 1e-94 | Bitscore: 348
Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%) |
NCBI |
Show Blast
|
| XP_001419472.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-69 | Bitscore: 263
Identities = 126/171 (73%), Positives = 143/171 (83%), Gaps = 1/171 (0%) |
NCBI |
Show Blast
|
| XP_002506663.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-67 | Bitscore: 259
Identities = 126/171 (73%), Positives = 141/171 (82%), Gaps = 1/171 (0%) |
NCBI |
Show Blast
|
| EEH54971.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-51 | Bitscore: 206
Identities = 105/154 (68%), Positives = 124/154 (80%), Gaps = 5/154 (3%) |
NCBI |
Show Blast
|
| ACU19650.1 |
unknown [Glycine max]
Evalue: 5e-44 | Bitscore: 180
Identities = 91/159 (57%), Positives = 118/159 (74%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| AT5G26880.1 |
| Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr5:9457953-9459193 REVERSE
Evalue: 3e-45 | Bitscore: 177
Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 6/159 (3%) |
Tair |
Show Blast
|
| XP_002313287.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-43 | Bitscore: 177
Identities = 92/159 (57%), Positives = 116/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| NP_198040.2 |
tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]
Evalue: 5e-43 | Bitscore: 177
Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| XP_001763677.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-42 | Bitscore: 175
Identities = 90/163 (55%), Positives = 120/163 (73%), Gaps = 6/163 (3%) |
NCBI |
Show Blast
|
| CBI24859.1 |
unnamed protein product [Vitis vinifera]
Evalue: 3e-42 | Bitscore: 174
Identities = 91/159 (57%), Positives = 116/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAI49946.1 |
unknown [environmental sequence]
Evalue: 2e-31 | Bitscore: 134
Identities = 71/153 (46%), Positives = 99/153 (64%), Gaps = 8/153 (5%) |
GOS |
Show Blast
|
| EAC47635.1 |
unknown [environmental sequence]
Evalue: 2e-26 | Bitscore: 118
Identities = 69/157 (43%), Positives = 96/157 (61%), Gaps = 12/157 (7%) |
GOS |
Show Blast
|
| EAF90792.1 |
unknown [environmental sequence]
Evalue: 2e-26 | Bitscore: 117
Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 12/161 (7%) |
GOS |
Show Blast
|
| EAF83603.1 |
unknown [environmental sequence]
Evalue: 3e-26 | Bitscore: 117
Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 12/161 (7%) |
GOS |
Show Blast
|
| EAB75740.1 |
unknown [environmental sequence]
Evalue: 7e-26 | Bitscore: 115
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 12/161 (7%) |
GOS |
Show Blast
|
| EAB40981.1 |
unknown [environmental sequence]
Evalue: 7e-26 | Bitscore: 115
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 12/161 (7%) |
GOS |
Show Blast
|
| EAG96888.1 |
unknown [environmental sequence]
Evalue: 8e-26 | Bitscore: 115
Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 18/164 (10%) |
GOS |
Show Blast
|
| EAK79469.1 |
unknown [environmental sequence]
Evalue: 5e-25 | Bitscore: 112
Identities = 67/166 (40%), Positives = 95/166 (57%), Gaps = 22/166 (13%) |
GOS |
Show Blast
|
| EAG64367.1 |
unknown [environmental sequence]
Evalue: 4e-24 | Bitscore: 110
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 14/162 (8%) |
GOS |
Show Blast
|
| EAG09014.1 |
unknown [environmental sequence]
Evalue: 4e-24 | Bitscore: 110
Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 7/152 (4%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL55185.1 |
tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
Evalue: 1e-94 | Bitscore: 348
Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%) |
NCBI |
Show Blast
|
| XP_001419472.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-69 | Bitscore: 263
Identities = 126/171 (73%), Positives = 143/171 (83%), Gaps = 1/171 (0%) |
NCBI |
Show Blast
|
| XP_002506663.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-67 | Bitscore: 259
Identities = 126/171 (73%), Positives = 141/171 (82%), Gaps = 1/171 (0%) |
NCBI |
Show Blast
|
| EEH54971.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-51 | Bitscore: 206
Identities = 105/154 (68%), Positives = 124/154 (80%), Gaps = 5/154 (3%) |
NCBI |
Show Blast
|
| ACU19650.1 |
unknown [Glycine max]
Evalue: 5e-44 | Bitscore: 180
Identities = 91/159 (57%), Positives = 118/159 (74%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| XP_002313287.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-43 | Bitscore: 177
Identities = 92/159 (57%), Positives = 116/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| NP_198040.2 |
tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]
Evalue: 5e-43 | Bitscore: 177
Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| XP_001763677.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-42 | Bitscore: 175
Identities = 90/163 (55%), Positives = 120/163 (73%), Gaps = 6/163 (3%) |
NCBI |
Show Blast
|
| CBI24859.1 |
unnamed protein product [Vitis vinifera]
Evalue: 3e-42 | Bitscore: 174
Identities = 91/159 (57%), Positives = 116/159 (72%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| XP_002513182.1 |
23S rRNA methyltransferase, putative [Ricinus communis]
Evalue: 3e-42 | Bitscore: 174
Identities = 90/159 (56%), Positives = 114/159 (71%), Gaps = 6/159 (3%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P74516 |
Uncharacterized tRNA/rRNA methyltransferase slr0992 OS=Synechocystis sp. (strain PCC 6803) GN=slr0992 PE=3
Evalue: 1e-26 | Bitscore: 118
Identities = 72/155 (46%), Positives = 91/155 (58%), Gaps = 8/155 (5%) |
SwissP |
Show Blast
|
| O31590 |
Uncharacterized tRNA/rRNA methyltransferase cspR OS=Bacillus subtilis GN=cspR PE=3 SV=2
Evalue: 1e-24 | Bitscore: 112
Identities = 74/162 (45%), Positives = 92/162 (56%), Gaps = 23/162 (14%) |
SwissP |
Show Blast
|
| P44868 |
Probable tRNA/rRNA methyltransferase HI0766 OS=Haemophilus influenzae GN=HI0766 PE=1 SV=1
Evalue: 5e-21 | Bitscore: 100
Identities = 60/155 (38%), Positives = 86/155 (55%), Gaps = 9/155 (5%) |
SwissP |
Show Blast
|
| P32813 |
Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region OS=Bacillus stearothermophilus PE=3 SV=1
Evalue: 3e-20 | Bitscore: 97
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 17/159 (10%) |
SwissP |
Show Blast
|
| P69001 |
Uncharacterized tRNA/rRNA methyltransferase lin0934 OS=Listeria innocua GN=lin0934 PE=3 SV=1
Evalue: 5e-20 | Bitscore: 97
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 11/154 (7%) |
SwissP |
Show Blast
|
| P0AGJ8 |
Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli O6 GN=yibK PE=3 SV=1
Evalue: 2e-19 | Bitscore: 95
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 9/158 (5%) |
SwissP |
Show Blast
|
| P0AGJ7 |
Uncharacterized tRNA/rRNA methyltransferase yibK OS=Escherichia coli (strain K12) GN=yibK PE=3 SV=1
Evalue: 2e-19 | Bitscore: 95
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 9/158 (5%) |
SwissP |
Show Blast
|
| Q721N0 |
Uncharacterized tRNA/rRNA methyltransferase LMOf2365_0956 OS=Listeria monocytogenes serotype 4b (strain F2365)
Evalue: 3e-19 | Bitscore: 94
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 11/154 (7%) |
SwissP |
Show Blast
|
| P75257 |
Uncharacterized tRNA/rRNA methyltransferase MG346 homolog OS=Mycoplasma pneumoniae GN=MPN_521 PE=1 SV=1
Evalue: 4e-16 | Bitscore: 84
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 15/162 (9%) |
SwissP |
Show Blast
|
| P47588 |
Uncharacterized tRNA/rRNA methyltransferase MG346 OS=Mycoplasma genitalium GN=MG346 PE=3 SV=1
Evalue: 1e-14 | Bitscore: 79
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 13/156 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G26880.1 |
| Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr5:9457953-9459193 REVERSE
Evalue: 3e-45 | Bitscore: 177
Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 6/159 (3%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
