- Gene ID
- Ot08g02530
- Locus
- Ot08g02530
- Functional Description
- GTPase Rab11/YPT3, small G protein superfamily (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom08
- Last Modified On
- 09 March 2010 6h04
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTPase Rab11/YPT3, small G protein superfamily (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA-binding transcription factor activity
- Biological Process
-
1.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54991.1 |
GTP binding protein (ISS) [Ostreococcus tauri]
Evalue: 5e-103 | Bitscore: 377
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%) |
NCBI |
Show Blast
|
| XP_001419155.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-92 | Bitscore: 340
Identities = 180/201 (89%), Positives = 189/201 (94%), Gaps = 2/201 (0%) |
NCBI |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 4e-80 | Bitscore: 296
Identities = 152/180 (84%), Positives = 157/180 (87%), Gaps = 1/180 (0%) |
GOS |
Show Blast
|
| EEH57354.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-74 | Bitscore: 280
Identities = 151/191 (79%), Positives = 165/191 (86%), Gaps = 3/191 (1%) |
NCBI |
Show Blast
|
| XP_002501385.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-73 | Bitscore: 278
Identities = 149/195 (76%), Positives = 163/195 (83%), Gaps = 7/195 (3%) |
NCBI |
Show Blast
|
| XP_001769660.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-69 | Bitscore: 265
Identities = 138/192 (71%), Positives = 160/192 (83%), Gaps = 3/192 (1%) |
NCBI |
Show Blast
|
| XP_001779517.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-68 | Bitscore: 262
Identities = 136/191 (71%), Positives = 158/191 (82%), Gaps = 3/191 (1%) |
NCBI |
Show Blast
|
| XP_002272169.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-67 | Bitscore: 257
Identities = 141/191 (73%), Positives = 159/191 (83%), Gaps = 6/191 (3%) |
NCBI |
Show Blast
|
| CAC24477.1 |
GTP binding protein [Cichorium intybus x Cichorium endivia]
Evalue: 7e-67 | Bitscore: 256
Identities = 137/189 (72%), Positives = 156/189 (82%), Gaps = 2/189 (1%) |
NCBI |
Show Blast
|
| CAB57219.1 |
GTP binding protein [Cichorium intybus x Cichorium endivia]
Evalue: 7e-67 | Bitscore: 256
Identities = 136/189 (71%), Positives = 155/189 (82%), Gaps = 2/189 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 4e-80 | Bitscore: 296
Identities = 152/180 (84%), Positives = 157/180 (87%), Gaps = 1/180 (0%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 2e-62 | Bitscore: 237
Identities = 132/186 (70%), Positives = 143/186 (76%), Gaps = 7/186 (3%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 4e-30 | Bitscore: 130
Identities = 61/162 (37%), Positives = 100/162 (61%), Gaps = 1/162 (0%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 5e-29 | Bitscore: 127
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 10/196 (5%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 1e-26 | Bitscore: 119
Identities = 61/154 (39%), Positives = 85/154 (55%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 1e-23 | Bitscore: 108
Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 3/156 (1%) |
GOS |
Show Blast
|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 4e-20 | Bitscore: 97
Identities = 46/118 (38%), Positives = 67/118 (56%) |
GOS |
Show Blast
|
| EAB62892.1 |
unknown [environmental sequence]
Evalue: 6e-19 | Bitscore: 93
Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 1/70 (1%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 1e-18 | Bitscore: 92
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 2/154 (1%) |
GOS |
Show Blast
|
| EAC00141.1 |
unknown [environmental sequence]
Evalue: 1e-18 | Bitscore: 92
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 1/164 (0%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54991.1 |
GTP binding protein (ISS) [Ostreococcus tauri]
Evalue: 5e-103 | Bitscore: 377
Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%) |
NCBI |
Show Blast
|
| XP_001419155.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-92 | Bitscore: 340
Identities = 180/201 (89%), Positives = 189/201 (94%), Gaps = 2/201 (0%) |
NCBI |
Show Blast
|
| EEH57354.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-74 | Bitscore: 280
Identities = 151/191 (79%), Positives = 165/191 (86%), Gaps = 3/191 (1%) |
NCBI |
Show Blast
|
| XP_002501385.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-73 | Bitscore: 278
Identities = 149/195 (76%), Positives = 163/195 (83%), Gaps = 7/195 (3%) |
NCBI |
Show Blast
|
| XP_001769660.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-69 | Bitscore: 265
Identities = 138/192 (71%), Positives = 160/192 (83%), Gaps = 3/192 (1%) |
NCBI |
Show Blast
|
| XP_001779517.1 |
Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-68 | Bitscore: 262
Identities = 136/191 (71%), Positives = 158/191 (82%), Gaps = 3/191 (1%) |
NCBI |
Show Blast
|
| XP_002272169.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-67 | Bitscore: 257
Identities = 141/191 (73%), Positives = 159/191 (83%), Gaps = 6/191 (3%) |
NCBI |
Show Blast
|
| CAC24477.1 |
GTP binding protein [Cichorium intybus x Cichorium endivia]
Evalue: 7e-67 | Bitscore: 256
Identities = 137/189 (72%), Positives = 156/189 (82%), Gaps = 2/189 (1%) |
NCBI |
Show Blast
|
| CAB57219.1 |
GTP binding protein [Cichorium intybus x Cichorium endivia]
Evalue: 7e-67 | Bitscore: 256
Identities = 136/189 (71%), Positives = 155/189 (82%), Gaps = 2/189 (1%) |
NCBI |
Show Blast
|
| CAA85733.1 |
guanine nucleotide regulatory protein [Vicia faba] prf||2115367E small GTP-binding protein
Evalue: 9e-67 | Bitscore: 256
Identities = 136/189 (71%), Positives = 157/189 (83%), Gaps = 2/189 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 2e-30 | Bitscore: 127
Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 5/183 (2%) |
Self |
Show Blast
|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 1e-28 | Bitscore: 120
Identities = 62/154 (40%), Positives = 85/154 (55%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 7e-27 | Bitscore: 115
Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 3/167 (1%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 8e-25 | Bitscore: 108
Identities = 66/177 (37%), Positives = 90/177 (50%), Gaps = 22/177 (12%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 8e-22 | Bitscore: 98
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 5/156 (3%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 9e-21 | Bitscore: 94
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 31/184 (16%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 3e-20 | Bitscore: 92
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 13/182 (7%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 3e-13 | Bitscore: 70
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 3/155 (1%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 4e-10 | Bitscore: 59
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P31583 |
Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1
Evalue: 1e-61 | Bitscore: 235
Identities = 127/198 (64%), Positives = 148/198 (74%), Gaps = 2/198 (1%) |
SwissP |
Show Blast
|
| Q98932 |
Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Evalue: 5e-61 | Bitscore: 233
Identities = 121/201 (60%), Positives = 142/201 (70%), Gaps = 6/201 (2%) |
SwissP |
Show Blast
|
| P29687 |
Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Evalue: 8e-61 | Bitscore: 233
Identities = 126/198 (63%), Positives = 146/198 (73%), Gaps = 2/198 (1%) |
SwissP |
Show Blast
|
| Q06AU6 |
Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Evalue: 4e-60 | Bitscore: 230
Identities = 118/195 (60%), Positives = 140/195 (71%), Gaps = 8/195 (4%) |
SwissP |
Show Blast
|
| P31582 |
Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1
Evalue: 6e-60 | Bitscore: 229
Identities = 125/198 (63%), Positives = 146/198 (73%), Gaps = 2/198 (1%) |
SwissP |
Show Blast
|
| Q0IIG7 |
Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Evalue: 3e-59 | Bitscore: 227
Identities = 119/195 (61%), Positives = 141/195 (72%), Gaps = 8/195 (4%) |
SwissP |
Show Blast
|
| P18066 |
Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Evalue: 4e-59 | Bitscore: 227
Identities = 119/195 (61%), Positives = 141/195 (72%), Gaps = 8/195 (4%) |
SwissP |
Show Blast
|
| P51148 |
Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Evalue: 4e-59 | Bitscore: 227
Identities = 120/201 (59%), Positives = 140/201 (69%), Gaps = 6/201 (2%) |
SwissP |
Show Blast
|
| P61271 |
Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1
Evalue: 4e-59 | Bitscore: 227
Identities = 119/195 (61%), Positives = 141/195 (72%), Gaps = 8/195 (4%) |
SwissP |
Show Blast
|
| Q5R7L7 |
Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Evalue: 4e-59 | Bitscore: 227
Identities = 120/201 (59%), Positives = 140/201 (69%), Gaps = 6/201 (2%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G19640.1 |
| Symbols: Ara-7, AtRABF2b, AtRab5B, ARA7 | ARA7; GTP binding | chr4:10687451-10689459 REVERSE
Evalue: 4e-61 | Bitscore: 230
Identities = 124/198 (62%), Positives = 149/198 (75%), Gaps = 3/198 (1%) |
Tair |
Show Blast
|
| AT5G45130.1 |
| Symbols: AtRab5A, AtRABF2a, Rha1, RHA1 | RHA1 | chr5:18261722-18263287 FORWARD
Evalue: 6e-61 | Bitscore: 229
Identities = 125/198 (63%), Positives = 146/198 (73%), Gaps = 2/198 (1%) |
Tair |
Show Blast
|
| AT3G54840.1 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6; GTP binding | chr3:20329575-20331760 FORWARD
Evalue: 1e-49 | Bitscore: 192
Identities = 95/171 (55%), Positives = 121/171 (70%), Gaps = 2/171 (1%) |
Tair |
Show Blast
|
| AT3G54840.2 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6 | chr3:20329575-20331715 FORWARD
Evalue: 2e-45 | Bitscore: 178
Identities = 87/156 (55%), Positives = 110/156 (70%), Gaps = 1/156 (0%) |
Tair |
Show Blast
|
| AT1G06400.1 |
| Symbols: AtRABA1a, AtRab11E, Ara-2, ARA2 | ARA2 (Arabidopsis Rab GTPase homolog A1a); GTP binding | chr1:1951088-1952685
Evalue: 1e-34 | Bitscore: 142
Identities = 67/160 (41%), Positives = 97/160 (60%) |
Tair |
Show Blast
|
| AT5G45750.1 |
| Symbols: AtRABA1c | AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding | chr5:18576545-18577866 FORWARD
Evalue: 4e-34 | Bitscore: 140
Identities = 67/160 (41%), Positives = 98/160 (61%) |
Tair |
Show Blast
|
| AT4G18430.1 |
| Symbols: AtRABA1e | AtRABA1e (Arabidopsis Rab GTPase homolog A1e); GTP binding | chr4:10183914-10185234 REVERSE
Evalue: 5e-34 | Bitscore: 140
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 15/201 (7%) |
Tair |
Show Blast
|
| AT1G16920.1 |
| Symbols: ATRABA4B, ATRABA1B, RAB11 | RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding | chr1:5787482-5789140
Evalue: 1e-33 | Bitscore: 139
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 14/200 (7%) |
Tair |
Show Blast
|
| AT2G22290.1 |
| Symbols: AtRABH1d | AtRABH1d (Arabidopsis Rab GTPase homolog H1d); GTP binding | chr2:9473648-9474768 FORWARD
Evalue: 2e-33 | Bitscore: 138
Identities = 63/170 (37%), Positives = 102/170 (60%) |
Tair |
Show Blast
|
| AT3G15060.1 |
| Symbols: AtRABA1g | AtRABA1g (Arabidopsis Rab GTPase homolog A1g); GTP binding | chr3:5069246-5070032 FORWARD
Evalue: 2e-33 | Bitscore: 138
Identities = 66/168 (39%), Positives = 99/168 (58%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST00671 |
Support Model | Y |
More Info |
| Mapping Location | 428833..429328 |
Strand + |
|
