- Gene ID
- Ot08g01320
- Locus
- Ot08g01320
- Functional Description
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom08
- Last Modified On
- 09 March 2010 5h45
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
protein binding
- Biological Process
-
n/a
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54871.1 |
putative actin-related protein 6 (ISS) [Ostreococcus tauri]
Evalue: 2e-109 | Bitscore: 398
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%) |
NCBI |
Show Blast
|
| XP_001419100.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-65 | Bitscore: 252
Identities = 145/229 (63%), Positives = 164/229 (71%), Gaps = 7/229 (3%) |
NCBI |
Show Blast
|
| XP_002502927.1 |
actin superfamily [Micromonas sp. RCC299]
Evalue: 1e-45 | Bitscore: 187
Identities = 110/236 (46%), Positives = 139/236 (58%), Gaps = 18/236 (7%) |
NCBI |
Show Blast
|
| EEH57280.1 |
actin superfamily [Micromonas pusilla CCMP1545]
Evalue: 6e-41 | Bitscore: 171
Identities = 106/230 (46%), Positives = 131/230 (56%), Gaps = 9/230 (3%) |
NCBI |
Show Blast
|
| ACF86726.1 |
unknown [Zea mays]
Evalue: 4e-34 | Bitscore: 148
Identities = 89/226 (39%), Positives = 120/226 (53%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| XP_002442554.1 |
hypothetical protein SORBIDRAFT_08g021780 [Sorghum bicolor]
Evalue: 5e-34 | Bitscore: 148
Identities = 89/226 (39%), Positives = 119/226 (52%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| NP_001042700.1 |
Os01g0269900 [Oryza sativa (japonica cultivar-group)] sp|Q5NBI2.1|ARP6_ORYSJ RecName: Full=Actin-related protein 6
Evalue: 8e-34 | Bitscore: 147
Identities = 90/221 (40%), Positives = 121/221 (54%), Gaps = 12/221 (5%) |
NCBI |
Show Blast
|
| Q5NBI2 |
Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1
Evalue: 1e-34 | Bitscore: 146
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 12/221 (5%) |
SwissP |
Show Blast
|
| A2WNB0 |
Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1
Evalue: 1e-34 | Bitscore: 146
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 12/221 (5%) |
SwissP |
Show Blast
|
| NP_001151095.1 |
actin-like protein arp6 [Zea mays]
Evalue: 4e-33 | Bitscore: 145
Identities = 88/226 (38%), Positives = 119/226 (52%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC84059.1 |
unknown [environmental sequence]
Evalue: 2e-11 | Bitscore: 68
Identities = 42/90 (46%), Positives = 49/90 (54%), Gaps = 5/90 (5%) |
GOS |
Show Blast
|
| EAK11583.1 |
unknown [environmental sequence]
Evalue: 5e-09 | Bitscore: 60
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 20/168 (11%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54871.1 |
putative actin-related protein 6 (ISS) [Ostreococcus tauri]
Evalue: 2e-109 | Bitscore: 398
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%) |
NCBI |
Show Blast
|
| XP_001419100.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-65 | Bitscore: 252
Identities = 145/229 (63%), Positives = 164/229 (71%), Gaps = 7/229 (3%) |
NCBI |
Show Blast
|
| XP_002502927.1 |
actin superfamily [Micromonas sp. RCC299]
Evalue: 1e-45 | Bitscore: 187
Identities = 110/236 (46%), Positives = 139/236 (58%), Gaps = 18/236 (7%) |
NCBI |
Show Blast
|
| EEH57280.1 |
actin superfamily [Micromonas pusilla CCMP1545]
Evalue: 6e-41 | Bitscore: 171
Identities = 106/230 (46%), Positives = 131/230 (56%), Gaps = 9/230 (3%) |
NCBI |
Show Blast
|
| ACF86726.1 |
unknown [Zea mays]
Evalue: 4e-34 | Bitscore: 148
Identities = 89/226 (39%), Positives = 120/226 (53%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| XP_002442554.1 |
hypothetical protein SORBIDRAFT_08g021780 [Sorghum bicolor]
Evalue: 5e-34 | Bitscore: 148
Identities = 89/226 (39%), Positives = 119/226 (52%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| NP_001042700.1 |
Os01g0269900 [Oryza sativa (japonica cultivar-group)] sp|Q5NBI2.1|ARP6_ORYSJ RecName: Full=Actin-related protein 6
Evalue: 8e-34 | Bitscore: 147
Identities = 90/221 (40%), Positives = 121/221 (54%), Gaps = 12/221 (5%) |
NCBI |
Show Blast
|
| NP_001151095.1 |
actin-like protein arp6 [Zea mays]
Evalue: 4e-33 | Bitscore: 145
Identities = 88/226 (38%), Positives = 119/226 (52%), Gaps = 18/226 (7%) |
NCBI |
Show Blast
|
| XP_002324643.1 |
actin related protein [Populus trichocarpa]
Evalue: 2e-32 | Bitscore: 143
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 8/219 (3%) |
NCBI |
Show Blast
|
| ABK95736.1 |
unknown [Populus trichocarpa]
Evalue: 2e-32 | Bitscore: 142
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 8/219 (3%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot16g00370 |
chrom16.0001 [46940..47431,47596..48594] inframe stop codon
Evalue: 3e-10 | Bitscore: 60
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 20/168 (11%) |
Self |
Show Blast
|
| Ot14g03380 |
chrom14.0001 [487878..489098]
Evalue: 1e-06 | Bitscore: 48
Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 33/232 (14%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q5NBI2 |
Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1
Evalue: 1e-34 | Bitscore: 146
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 12/221 (5%) |
SwissP |
Show Blast
|
| A2WNB0 |
Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1
Evalue: 1e-34 | Bitscore: 146
Identities = 85/221 (38%), Positives = 113/221 (51%), Gaps = 12/221 (5%) |
SwissP |
Show Blast
|
| Q8LGE3 |
Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1
Evalue: 1e-31 | Bitscore: 136
Identities = 77/223 (34%), Positives = 110/223 (49%), Gaps = 12/223 (5%) |
SwissP |
Show Blast
|
| Q5AXH1 |
Actin-like protein arp6 OS=Emericella nidulans GN=arp6 PE=3 SV=1
Evalue: 9e-24 | Bitscore: 110
Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 30/250 (12%) |
SwissP |
Show Blast
|
| Q7S6X6 |
Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1
Evalue: 5e-23 | Bitscore: 107
Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 16/239 (6%) |
SwissP |
Show Blast
|
| Q4W9M3 |
Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1
Evalue: 1e-22 | Bitscore: 106
Identities = 78/239 (32%), Positives = 112/239 (46%), Gaps = 19/239 (7%) |
SwissP |
Show Blast
|
| Q6C982 |
Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1
Evalue: 2e-22 | Bitscore: 105
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 16/172 (9%) |
SwissP |
Show Blast
|
| Q5KAQ4 |
Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1
Evalue: 1e-21 | Bitscore: 103
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%) |
SwissP |
Show Blast
|
| P45890 |
Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1
Evalue: 6e-21 | Bitscore: 100
Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 12/226 (5%) |
SwissP |
Show Blast
|
| O94241 |
Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1
Evalue: 6e-21 | Bitscore: 100
Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 19/235 (8%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G33520.1 |
| Symbols: ARP6, SUF3, ESD1, ATARP6 | ATARP6; structural constituent of cytoskeleton | chr3:14104777-14106462
Evalue: 1e-32 | Bitscore: 136
Identities = 77/223 (34%), Positives = 110/223 (49%), Gaps = 12/223 (5%) |
Tair |
Show Blast
|
| AT2G42090.1 |
| Symbols: ACT9 | ACT9 (ACTIN 9); structural constituent of cytoskeleton | chr2:17563822-17565447 FORWARD
Evalue: 7e-13 | Bitscore: 70
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%) |
Tair |
Show Blast
|
| AT2G42100.1 |
| Symbols: | actin, putative | chr2:17567289-17569023 FORWARD
Evalue: 2e-10 | Bitscore: 62
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 20/170 (11%) |
Tair |
Show Blast
|
| AT3G12110.1 |
| Symbols: ACT11 | ACT11 (ACTIN-11); structural constituent of cytoskeleton | chr3:3858122-3859615 FORWARD
Evalue: 5e-10 | Bitscore: 61
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 20/168 (11%) |
Tair |
Show Blast
|
| AT3G18780.1 |
| Symbols: DER1, LSR2, ENL2, ACT2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | chr3:6475541-6476734
Evalue: 9e-10 | Bitscore: 60
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%) |
Tair |
Show Blast
|
| AT2G37620.2 |
| Symbols: AAC1, ACT1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton | chr2:15786839-15788319 FORWARD
Evalue: 1e-09 | Bitscore: 60
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 20/170 (11%) |
Tair |
Show Blast
|
| AT3G18780.2 |
| Symbols: DER1, LSR2, ENL2, ACT2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | chr3:6475541-6476838
Evalue: 1e-09 | Bitscore: 60
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%) |
Tair |
Show Blast
|
| AT1G49240.1 |
| Symbols: ACT8 | ACT8 (ACTIN 8); structural constituent of cytoskeleton | chr1:18220207-18221615 FORWARD
Evalue: 1e-09 | Bitscore: 60
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%) |
Tair |
Show Blast
|
| AT3G53750.1 |
| Symbols: ACT3 | ACT3 (ACTIN 3); structural constituent of cytoskeleton | chr3:19926902-19928349 FORWARD
Evalue: 1e-09 | Bitscore: 60
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 20/170 (11%) |
Tair |
Show Blast
|
| AT2G37620.1 |
| Symbols: AAC1, ACT1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton | chr2:15786839-15788319 FORWARD
Evalue: 1e-09 | Bitscore: 60
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 20/170 (11%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
