- Gene ID
- Ot08g00370
- Locus
- Ot08g00370
- Functional Description
- putative gag-pol polyprotein [Oryza sativa (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom08
- Last Modified On
- 09 March 2010 5h29
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative gag-pol polyprotein [Oryza sativa (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
nucleic acid binding
2.
zinc ion binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR013103 |
Reverse transcriptase, RNA-dependent DNA polymerase |
InterPro |
|
IPR012337 |
Polynucleotidyl transferase, ribonuclease H fold |
InterPro |
|
IPR001878 |
Zinc finger, CCHC-type |
InterPro |
|
PTHR11439 |
GAG-POL-RELATED RETROTRANSPOSON |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54776.1 |
putative gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3087
Identities = 1527/1527 (100%), Positives = 1527/1527 (100%), Gaps = 0/1527 (0%) |
NCBI |
Show Blast
|
| XP_001422325.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 785
Identities = 366/532 (68%), Positives = 437/532 (82%), Gaps = 8/532 (1%) |
NCBI |
Show Blast
|
| XP_001422354.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-96 | Bitscore: 358
Identities = 164/218 (75%), Positives = 186/218 (85%), Gaps = 0/218 (0%) |
NCBI |
Show Blast
|
| Ot19g00450 |
chrom19.0001 [61683..62470,62534..62754,62798..63017,63075..63354]
Evalue: 9e-91 | Bitscore: 330
Identities = 157/180 (87%), Positives = 159/180 (88%) |
Self |
Show Blast
|
| CAL58355.1 |
gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 3e-87 | Bitscore: 328
Identities = 169/180 (93%), Positives = 171/180 (95%), Gaps = 0/180 (0%) |
NCBI |
Show Blast
|
| Ot16g01150 |
chrom16.0001 [158570..158574,158649..158815,158867..159186]
Evalue: 2e-74 | Bitscore: 276
Identities = 136/171 (79%), Positives = 138/171 (80%), Gaps = 17/171 (9%) |
Self |
Show Blast
|
| CAL58114.1 |
gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 7e-71 | Bitscore: 274
Identities = 146/171 (85%), Positives = 148/171 (86%), Gaps = 17/171 (9%) |
NCBI |
Show Blast
|
| XP_002273304.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-62 | Bitscore: 247
Identities = 155/498 (31%), Positives = 261/498 (52%), Gaps = 29/498 (5%) |
NCBI |
Show Blast
|
| ABY49842.1 |
hypothetical protein [Vitis hybrid cultivar]
Evalue: 5e-62 | Bitscore: 244
Identities = 149/495 (30%), Positives = 261/495 (52%), Gaps = 36/495 (7%) |
NCBI |
Show Blast
|
| XP_002556819.1 |
Pc06g02160 [Penicillium chrysogenum Wisconsin 54-1255]
Evalue: 5e-62 | Bitscore: 244
Identities = 164/513 (31%), Positives = 264/513 (51%), Gaps = 30/513 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC85779.1 |
unknown [environmental sequence]
Evalue: 4e-57 | Bitscore: 223
Identities = 97/145 (66%), Positives = 123/145 (84%), Gaps = 1/145 (0%) |
GOS |
Show Blast
|
| EAF40135.1 |
unknown [environmental sequence]
Evalue: 3e-21 | Bitscore: 104
Identities = 90/279 (32%), Positives = 136/279 (48%), Gaps = 28/279 (10%) |
GOS |
Show Blast
|
| EAF38242.1 |
unknown [environmental sequence]
Evalue: 7e-21 | Bitscore: 103
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 20/234 (8%) |
GOS |
Show Blast
|
| EAF76612.1 |
unknown [environmental sequence]
Evalue: 1e-16 | Bitscore: 89
Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 17/177 (9%) |
GOS |
Show Blast
|
| EAD12058.1 |
unknown [environmental sequence]
Evalue: 1e-15 | Bitscore: 85
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 22/208 (10%) |
GOS |
Show Blast
|
| EAE91694.1 |
unknown [environmental sequence]
Evalue: 2e-14 | Bitscore: 82
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 20/180 (11%) |
GOS |
Show Blast
|
| EAB38114.1 |
unknown [environmental sequence]
Evalue: 6e-14 | Bitscore: 80
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 41/229 (17%) |
GOS |
Show Blast
|
| EAB57461.1 |
unknown [environmental sequence]
Evalue: 2e-13 | Bitscore: 78
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 7/148 (4%) |
GOS |
Show Blast
|
| EAB61675.1 |
unknown [environmental sequence]
Evalue: 1e-12 | Bitscore: 75
Identities = 77/259 (29%), Positives = 107/259 (41%), Gaps = 24/259 (9%) |
GOS |
Show Blast
|
| EAC30259.1 |
unknown [environmental sequence]
Evalue: 2e-11 | Bitscore: 72
Identities = 75/312 (24%), Positives = 124/312 (39%), Gaps = 63/312 (20%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54776.1 |
putative gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 3087
Identities = 1527/1527 (100%), Positives = 1527/1527 (100%), Gaps = 0/1527 (0%) |
NCBI |
Show Blast
|
| XP_001422325.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 785
Identities = 366/532 (68%), Positives = 437/532 (82%), Gaps = 8/532 (1%) |
NCBI |
Show Blast
|
| XP_001422354.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-96 | Bitscore: 358
Identities = 164/218 (75%), Positives = 186/218 (85%), Gaps = 0/218 (0%) |
NCBI |
Show Blast
|
| CAL58355.1 |
gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 3e-87 | Bitscore: 328
Identities = 169/180 (93%), Positives = 171/180 (95%), Gaps = 0/180 (0%) |
NCBI |
Show Blast
|
| CAL58114.1 |
gag-pol polyprotein (ISS) [Ostreococcus tauri]
Evalue: 7e-71 | Bitscore: 274
Identities = 146/171 (85%), Positives = 148/171 (86%), Gaps = 17/171 (9%) |
NCBI |
Show Blast
|
| XP_002273304.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-62 | Bitscore: 247
Identities = 155/498 (31%), Positives = 261/498 (52%), Gaps = 29/498 (5%) |
NCBI |
Show Blast
|
| ABY49842.1 |
hypothetical protein [Vitis hybrid cultivar]
Evalue: 5e-62 | Bitscore: 244
Identities = 149/495 (30%), Positives = 261/495 (52%), Gaps = 36/495 (7%) |
NCBI |
Show Blast
|
| XP_002556819.1 |
Pc06g02160 [Penicillium chrysogenum Wisconsin 54-1255]
Evalue: 5e-62 | Bitscore: 244
Identities = 164/513 (31%), Positives = 264/513 (51%), Gaps = 30/513 (5%) |
NCBI |
Show Blast
|
| XP_002279876.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 7e-62 | Bitscore: 244
Identities = 146/482 (30%), Positives = 256/482 (53%), Gaps = 28/482 (5%) |
NCBI |
Show Blast
|
| XP_002275700.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-61 | Bitscore: 243
Identities = 149/495 (30%), Positives = 263/495 (53%), Gaps = 36/495 (7%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot19g00450 |
chrom19.0001 [61683..62470,62534..62754,62798..63017,63075..63354]
Evalue: 9e-91 | Bitscore: 330
Identities = 157/180 (87%), Positives = 159/180 (88%) |
Self |
Show Blast
|
| Ot16g01150 |
chrom16.0001 [158570..158574,158649..158815,158867..159186]
Evalue: 2e-74 | Bitscore: 276
Identities = 136/171 (79%), Positives = 138/171 (80%), Gaps = 17/171 (9%) |
Self |
Show Blast
|
| Ot19g00260 |
chrom19.0001 [39027..39243,39421..39809]
Evalue: 2e-54 | Bitscore: 210
Identities = 102/107 (95%), Positives = 104/107 (97%) |
Self |
Show Blast
|
| Ot19g00970 |
chrom19.0001 [120872..124292,124404..124532,124575..124700, 124823..125163]
Evalue: 3e-50 | Bitscore: 196
Identities = 160/579 (27%), Positives = 270/579 (46%), Gaps = 41/579 (7%) |
Self |
Show Blast
|
| Ot02g00250 |
chrom02.0001 [52989..53013,53065..53384]
Evalue: 1e-44 | Bitscore: 177
Identities = 89/124 (71%), Positives = 91/124 (73%), Gaps = 17/124 (13%) |
Self |
Show Blast
|
| Ot16g01140 |
chrom16.0001 [157693..157975,158099..158257,158326..158333] inframe stop codon
Evalue: 4e-38 | Bitscore: 155
Identities = 77/92 (83%), Positives = 80/92 (86%) |
Self |
Show Blast
|
| Ot19g00760 |
chrom19.0001 [94275..94764,94811..95582,95684..96488,96804..96899]
Evalue: 2e-31 | Bitscore: 134
Identities = 110/383 (28%), Positives = 177/383 (46%), Gaps = 36/383 (9%) |
Self |
Show Blast
|
| Ot08g01620 |
chrom08.0001 [273750..273999,274121..274303,274339..274346] inframe stop codon
Evalue: 2e-28 | Bitscore: 123
Identities = 64/80 (80%), Positives = 68/80 (85%) |
Self |
Show Blast
|
| Ot19g00370 |
chrom19.0001 [51556..51886,52178..52390,52467..52561]
Evalue: 2e-27 | Bitscore: 120
Identities = 53/60 (88%), Positives = 59/60 (98%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P10978 |
Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Evalue: 8e-57 | Bitscore: 223
Identities = 233/966 (24%), Positives = 420/966 (43%), Gaps = 127/966 (13%) |
SwissP |
Show Blast
|
| P04146 |
Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
Evalue: 9e-52 | Bitscore: 206
Identities = 138/476 (28%), Positives = 238/476 (50%), Gaps = 29/476 (6%) |
SwissP |
Show Blast
|
| P25600 |
Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2
Evalue: 5e-16 | Bitscore: 87
Identities = 78/327 (23%), Positives = 141/327 (43%), Gaps = 26/327 (7%) |
SwissP |
Show Blast
|
| P47024 |
Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-J PE=3 SV=2
Evalue: 1e-15 | Bitscore: 86
Identities = 130/557 (23%), Positives = 228/557 (40%), Gaps = 80/557 (14%) |
SwissP |
Show Blast
|
| P0C2J7 |
Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-H PE=3 SV=1
Evalue: 2e-15 | Bitscore: 86
Identities = 130/557 (23%), Positives = 228/557 (40%), Gaps = 80/557 (14%) |
SwissP |
Show Blast
|
| Q99231 |
Transposon Ty1-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR3 PE=1 SV=2
Evalue: 2e-15 | Bitscore: 85
Identities = 114/482 (23%), Positives = 205/482 (42%), Gaps = 61/482 (12%) |
SwissP |
Show Blast
|
| O13527 |
Transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-A PE=1 SV=2
Evalue: 9e-15 | Bitscore: 84
Identities = 112/482 (23%), Positives = 205/482 (42%), Gaps = 61/482 (12%) |
SwissP |
Show Blast
|
| P0C2I5 |
Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR2 PE=3 SV=1
Evalue: 2e-14 | Bitscore: 82
Identities = 122/536 (22%), Positives = 225/536 (41%), Gaps = 68/536 (12%) |
SwissP |
Show Blast
|
| Q12414 |
Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-PL PE=3 SV=1
Evalue: 3e-14 | Bitscore: 82
Identities = 122/536 (22%), Positives = 225/536 (41%), Gaps = 68/536 (12%) |
SwissP |
Show Blast
|
| Q03434 |
Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ML2 PE=3 SV=2
Evalue: 3e-14 | Bitscore: 82
Identities = 122/536 (22%), Positives = 225/536 (41%), Gaps = 68/536 (12%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G23160.1 |
| Symbols: | protein kinase family protein | chr4:12129496-12134097 FORWARD
Evalue: 9e-46 | Bitscore: 183
Identities = 133/476 (27%), Positives = 238/476 (50%), Gaps = 43/476 (9%) |
Tair |
Show Blast
|
| ATMG00810.1 |
| Symbols: ORF240B | hypothetical protein | chrM:227709-228431 REVERSE
Evalue: 2e-14 | Bitscore: 79
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 20/239 (8%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
