- Gene ID
- Ot07g03680
- Locus
- Ot07g03680
- Functional Description
- polyadenylate-binding protein, putative / PABP, putative (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 5h10
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
| Sorry, only history comparison allowed for non logged in users!! |
Compare this version with :
Go! |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- polyadenylate-binding protein, putative / PABP, putative (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
nucleotide binding
2.
nucleic acid binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF54928 |
RNA-binding domain, RBD |
superfamily |
|
IPR000504 |
RNA recognition motif, RNP-1 |
InterPro |
|
IPR006515 |
Polyadenylate binding protein, human types 1, 2, 3, 4 |
InterPro |
|
PTHR10432 |
RNA-BINDING PROTEIN |
HMMPanther |
|
IPR012677 |
Nucleotide-binding, alpha-beta plait |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54641.1 |
polyadenylate-binding protein, putative / PABP, putative (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 907
Identities = 474/474 (100%), Positives = 474/474 (100%), Gaps = 0/474 (0%) |
NCBI |
Show Blast
|
| XP_001418998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 651
Identities = 358/414 (86%), Positives = 367/414 (88%), Gaps = 2/414 (0%) |
NCBI |
Show Blast
|
| EEH60801.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-143 | Bitscore: 513
Identities = 286/381 (75%), Positives = 318/381 (83%), Gaps = 3/381 (0%) |
NCBI |
Show Blast
|
| XP_002503581.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-143 | Bitscore: 512
Identities = 284/363 (78%), Positives = 311/363 (85%), Gaps = 2/363 (0%) |
NCBI |
Show Blast
|
| XP_001770548.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 5e-130 | Bitscore: 469
Identities = 267/446 (59%), Positives = 325/446 (72%), Gaps = 8/446 (1%) |
NCBI |
Show Blast
|
| XP_001780529.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-130 | Bitscore: 468
Identities = 252/382 (65%), Positives = 306/382 (80%), Gaps = 2/382 (0%) |
NCBI |
Show Blast
|
| XP_001779388.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-128 | Bitscore: 464
Identities = 250/374 (66%), Positives = 302/374 (80%), Gaps = 2/374 (0%) |
NCBI |
Show Blast
|
| XP_001761820.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-127 | Bitscore: 460
Identities = 254/398 (63%), Positives = 308/398 (77%), Gaps = 4/398 (1%) |
NCBI |
Show Blast
|
| NP_564554.1 |
PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor [Arabidopsis thaliana]
Evalue: 4e-126 | Bitscore: 456
Identities = 245/398 (61%), Positives = 301/398 (75%), Gaps = 5/398 (1%) |
NCBI |
Show Blast
|
| XP_002510185.1 |
polyadenylate-binding protein, putative [Ricinus communis]
Evalue: 9e-126 | Bitscore: 454
Identities = 241/397 (60%), Positives = 300/397 (75%), Gaps = 4/397 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAE00735.1 |
unknown [environmental sequence]
Evalue: 5e-48 | Bitscore: 192
Identities = 91/95 (95%), Positives = 94/95 (98%) |
GOS |
Show Blast
|
| EAE67584.1 |
unknown [environmental sequence]
Evalue: 1e-21 | Bitscore: 104
Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 8/177 (4%) |
GOS |
Show Blast
|
| EAE72505.1 |
unknown [environmental sequence]
Evalue: 5e-18 | Bitscore: 92
Identities = 38/81 (46%), Positives = 58/81 (71%) |
GOS |
Show Blast
|
| EAC54571.1 |
unknown [environmental sequence]
Evalue: 5e-16 | Bitscore: 85
Identities = 35/56 (62%), Positives = 48/56 (85%) |
GOS |
Show Blast
|
| EAE43431.1 |
unknown [environmental sequence]
Evalue: 3e-09 | Bitscore: 63
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%) |
GOS |
Show Blast
|
| EAI85205.1 |
unknown [environmental sequence]
Evalue: 4e-09 | Bitscore: 62
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%) |
GOS |
Show Blast
|
| EAI08296.1 |
unknown [environmental sequence]
Evalue: 5e-09 | Bitscore: 62
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 3/73 (4%) |
GOS |
Show Blast
|
| EAE65205.1 |
unknown [environmental sequence]
Evalue: 8e-09 | Bitscore: 61
Identities = 27/46 (58%), Positives = 37/46 (80%) |
GOS |
Show Blast
|
| EAB08795.1 |
unknown [environmental sequence]
Evalue: 1e-08 | Bitscore: 61
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 2/73 (2%) |
GOS |
Show Blast
|
| EAJ88922.1 |
unknown [environmental sequence]
Evalue: 2e-08 | Bitscore: 60
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54641.1 |
polyadenylate-binding protein, putative / PABP, putative (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 907
Identities = 474/474 (100%), Positives = 474/474 (100%), Gaps = 0/474 (0%) |
NCBI |
Show Blast
|
| XP_001418998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 651
Identities = 358/414 (86%), Positives = 367/414 (88%), Gaps = 2/414 (0%) |
NCBI |
Show Blast
|
| EEH60801.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-143 | Bitscore: 513
Identities = 286/381 (75%), Positives = 318/381 (83%), Gaps = 3/381 (0%) |
NCBI |
Show Blast
|
| XP_002503581.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 4e-143 | Bitscore: 512
Identities = 284/363 (78%), Positives = 311/363 (85%), Gaps = 2/363 (0%) |
NCBI |
Show Blast
|
| XP_001770548.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 5e-130 | Bitscore: 469
Identities = 267/446 (59%), Positives = 325/446 (72%), Gaps = 8/446 (1%) |
NCBI |
Show Blast
|
| XP_001780529.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-130 | Bitscore: 468
Identities = 252/382 (65%), Positives = 306/382 (80%), Gaps = 2/382 (0%) |
NCBI |
Show Blast
|
| XP_001779388.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-128 | Bitscore: 464
Identities = 250/374 (66%), Positives = 302/374 (80%), Gaps = 2/374 (0%) |
NCBI |
Show Blast
|
| XP_001761820.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-127 | Bitscore: 460
Identities = 254/398 (63%), Positives = 308/398 (77%), Gaps = 4/398 (1%) |
NCBI |
Show Blast
|
| NP_564554.1 |
PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor [Arabidopsis thaliana]
Evalue: 4e-126 | Bitscore: 456
Identities = 245/398 (61%), Positives = 301/398 (75%), Gaps = 5/398 (1%) |
NCBI |
Show Blast
|
| XP_002510185.1 |
polyadenylate-binding protein, putative [Ricinus communis]
Evalue: 9e-126 | Bitscore: 454
Identities = 241/397 (60%), Positives = 300/397 (75%), Gaps = 4/397 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot03g02390 |
chrom03.0001 [376479..376771,376855..377515] inframe stop codon
Evalue: 2e-15 | Bitscore: 79
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 18/211 (8%) |
Self |
Show Blast
|
| Ot13g02510 |
chrom13.0001 [399653..401605]
Evalue: 2e-14 | Bitscore: 75
Identities = 69/268 (25%), Positives = 132/268 (49%), Gaps = 37/268 (13%) |
Self |
Show Blast
|
| Ot09g01160 |
chrom09.0001 [159997..160874,160930..160994,161349..163525, 163622..163786]
Evalue: 3e-13 | Bitscore: 71
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 3/180 (1%) |
Self |
Show Blast
|
| Ot12g00040 |
chrom12.0001 [3690..4603,4639..5764]
Evalue: 1e-11 | Bitscore: 66
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 8/162 (4%) |
Self |
Show Blast
|
| Ot03g03870 |
chrom03.0001 [629197..630188,630260..630437,630472..630642,
Evalue: 2e-09 | Bitscore: 59
Identities = 57/179 (31%), Positives = 78/179 (43%), Gaps = 31/179 (17%) |
Self |
Show Blast
|
| Ot10g03000 |
chrom10.0001 [473102..473666,473770..473977,474050..474092,
Evalue: 1e-07 | Bitscore: 53
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%) |
Self |
Show Blast
|
| Ot03g00380 |
chrom03.0001 [75139..76305]
Evalue: 2e-06 | Bitscore: 49
Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 76/267 (28%) |
Self |
Show Blast
|
| Ot12g02340 |
chrom12.0001 [369778..371235]
Evalue: 2e-06 | Bitscore: 48
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%) |
Self |
Show Blast
|
| Ot04g01860 |
chrom04.0001 [267001..269724]
Evalue: 2e-06 | Bitscore: 48
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P42731 |
Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
Evalue: 1e-116 | Bitscore: 419
Identities = 215/398 (54%), Positives = 279/398 (70%), Gaps = 5/398 (1%) |
SwissP |
Show Blast
|
| Q6IP09 |
Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1
Evalue: 1e-109 | Bitscore: 397
Identities = 205/368 (55%), Positives = 258/368 (70%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| P20965 |
Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3
Evalue: 1e-109 | Bitscore: 397
Identities = 204/368 (55%), Positives = 258/368 (70%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| Q9EPH8 |
Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1
Evalue: 1e-109 | Bitscore: 395
Identities = 206/368 (55%), Positives = 256/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| P61286 |
Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Evalue: 1e-108 | Bitscore: 394
Identities = 205/368 (55%), Positives = 256/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| P11940 |
Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Evalue: 1e-108 | Bitscore: 394
Identities = 205/368 (55%), Positives = 256/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| Q13310 |
Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Evalue: 1e-108 | Bitscore: 393
Identities = 207/368 (56%), Positives = 254/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| P29341 |
Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1
Evalue: 1e-108 | Bitscore: 393
Identities = 205/368 (55%), Positives = 256/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| P21187 |
Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3
Evalue: 1e-108 | Bitscore: 393
Identities = 204/369 (55%), Positives = 255/369 (69%), Gaps = 4/369 (1%) |
SwissP |
Show Blast
|
| Q5R8F7 |
Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Evalue: 1e-108 | Bitscore: 392
Identities = 204/368 (55%), Positives = 255/368 (69%), Gaps = 5/368 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G49760.1 |
| Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18420408-18423421
Evalue: 1e-125 | Bitscore: 444
Identities = 229/398 (57%), Positives = 280/398 (70%), Gaps = 5/398 (1%) |
Tair |
Show Blast
|
| AT1G71770.1 |
| Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA binding | chr1:26994439-26997109 REVERSE
Evalue: 1e-106 | Bitscore: 383
Identities = 195/368 (52%), Positives = 252/368 (68%), Gaps = 4/368 (1%) |
Tair |
Show Blast
|
| AT2G23350.1 |
| Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | chr2:9950289-9953121
Evalue: 1e-105 | Bitscore: 378
Identities = 198/365 (54%), Positives = 256/365 (70%), Gaps = 1/365 (0%) |
Tair |
Show Blast
|
| AT1G22760.1 |
| Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding | chr1:8055588-8058788 FORWARD
Evalue: 1e-103 | Bitscore: 374
Identities = 189/368 (51%), Positives = 250/368 (67%), Gaps = 4/368 (1%) |
Tair |
Show Blast
|
| AT2G36660.1 |
| Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA binding / translation initiation factor | chr2:15368555-15371477
Evalue: 8e-81 | Bitscore: 298
Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 1/363 (0%) |
Tair |
Show Blast
|
| AT1G34140.1 |
| Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding / translation initiation factor | chr1:12433334-12434713
Evalue: 1e-72 | Bitscore: 270
Identities = 141/307 (45%), Positives = 195/307 (63%), Gaps = 7/307 (2%) |
Tair |
Show Blast
|
| AT3G16380.1 |
| Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor | chr3:5558682-5560999
Evalue: 2e-66 | Bitscore: 249
Identities = 144/365 (39%), Positives = 216/365 (59%), Gaps = 6/365 (1%) |
Tair |
Show Blast
|
| AT4G34110.1 |
| Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN 2); RNA binding | chr4:16337714-16339896 FORWARD
Evalue: 1e-57 | Bitscore: 220
Identities = 118/247 (47%), Positives = 156/247 (63%), Gaps = 5/247 (2%) |
Tair |
Show Blast
|
| AT2G18510.1 |
| Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding | chr2:8038636-8040599 REVERSE
Evalue: 2e-27 | Bitscore: 120
Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 6/177 (3%) |
Tair |
Show Blast
|
| AT1G54080.1 |
| Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1:20187591-20190492 REVERSE
Evalue: 5e-21 | Bitscore: 99
Identities = 81/271 (29%), Positives = 131/271 (48%), Gaps = 45/271 (16%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CTZ66-B08.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ72-G01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ89-E12.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 427111..427747,735318..735341 |
Strand - |
| EST ID | CTZ91-F12.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ93-F01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
|
