- Gene ID
- Ot07g03410
- Locus
- Ot07g03410
- Functional Description
- unnamed product
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 5h03
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- unnamed product
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
integral component of membrane
- Molecular Function
-
1.
prenyltransferase activity
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
PTHR11048 |
PRENYLTRANSFERASES |
HMMPanther |
|
IPR000537 |
UbiA prenyltransferase |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54614.1 |
homogentisic acid geranylgeranyl transferase (ISS) [Ostreococcus tauri]
Evalue: 9e-175 | Bitscore: 616
Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| XP_001416140.1 |
homogentisate phytylprenyltransferase/homogentisic acid geranylgeranyl transferase [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-67 | Bitscore: 260
Identities = 147/245 (60%), Positives = 179/245 (73%), Gaps = 14/245 (5%) |
NCBI |
Show Blast
|
| XP_002503953.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-50 | Bitscore: 202
Identities = 109/245 (44%), Positives = 162/245 (66%), Gaps = 18/245 (7%) |
NCBI |
Show Blast
|
| EEH60766.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-47 | Bitscore: 194
Identities = 113/247 (45%), Positives = 159/247 (64%), Gaps = 19/247 (7%) |
NCBI |
Show Blast
|
| ABB70126.1 |
homogentisate phytyltransferase VTE2-1 [Glycine max]
Evalue: 4e-40 | Bitscore: 169
Identities = 100/247 (40%), Positives = 142/247 (57%), Gaps = 20/247 (8%) |
NCBI |
Show Blast
|
| ACU19244.1 |
unknown [Glycine max]
Evalue: 4e-40 | Bitscore: 169
Identities = 100/247 (40%), Positives = 142/247 (57%), Gaps = 20/247 (8%) |
NCBI |
Show Blast
|
| XP_001758102.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-40 | Bitscore: 168
Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 13/246 (5%) |
NCBI |
Show Blast
|
| XP_001752307.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-39 | Bitscore: 166
Identities = 101/246 (41%), Positives = 142/246 (57%), Gaps = 14/246 (5%) |
NCBI |
Show Blast
|
| AAP43912.1 |
homogentisic acid geranylgeranyl transferase [Triticum aestivum]
Evalue: 4e-38 | Bitscore: 162
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 16/245 (6%) |
NCBI |
Show Blast
|
| XP_001696814.1 |
hypothetical protein CHLREDRAFT_104647 [Chlamydomonas reinhardtii]
Evalue: 1e-37 | Bitscore: 161
Identities = 97/256 (37%), Positives = 136/256 (53%), Gaps = 33/256 (12%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ99575.1 |
unknown [environmental sequence]
Evalue: 5e-06 | Bitscore: 51
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 10/89 (11%) |
GOS |
Show Blast
|
| EAJ83885.1 |
unknown [environmental sequence]
Evalue: 0.0005 | Bitscore: 45
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 6/161 (3%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54614.1 |
homogentisic acid geranylgeranyl transferase (ISS) [Ostreococcus tauri]
Evalue: 9e-175 | Bitscore: 616
Identities = 312/312 (100%), Positives = 312/312 (100%), Gaps = 0/312 (0%) |
NCBI |
Show Blast
|
| XP_001416140.1 |
homogentisate phytylprenyltransferase/homogentisic acid geranylgeranyl transferase [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-67 | Bitscore: 260
Identities = 147/245 (60%), Positives = 179/245 (73%), Gaps = 14/245 (5%) |
NCBI |
Show Blast
|
| XP_002503953.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 3e-50 | Bitscore: 202
Identities = 109/245 (44%), Positives = 162/245 (66%), Gaps = 18/245 (7%) |
NCBI |
Show Blast
|
| EEH60766.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-47 | Bitscore: 194
Identities = 113/247 (45%), Positives = 159/247 (64%), Gaps = 19/247 (7%) |
NCBI |
Show Blast
|
| ABB70126.1 |
homogentisate phytyltransferase VTE2-1 [Glycine max]
Evalue: 4e-40 | Bitscore: 169
Identities = 100/247 (40%), Positives = 142/247 (57%), Gaps = 20/247 (8%) |
NCBI |
Show Blast
|
| ACU19244.1 |
unknown [Glycine max]
Evalue: 4e-40 | Bitscore: 169
Identities = 100/247 (40%), Positives = 142/247 (57%), Gaps = 20/247 (8%) |
NCBI |
Show Blast
|
| XP_001758102.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-40 | Bitscore: 168
Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 13/246 (5%) |
NCBI |
Show Blast
|
| XP_001752307.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-39 | Bitscore: 166
Identities = 101/246 (41%), Positives = 142/246 (57%), Gaps = 14/246 (5%) |
NCBI |
Show Blast
|
| AAP43912.1 |
homogentisic acid geranylgeranyl transferase [Triticum aestivum]
Evalue: 4e-38 | Bitscore: 162
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 16/245 (6%) |
NCBI |
Show Blast
|
| XP_001696814.1 |
hypothetical protein CHLREDRAFT_104647 [Chlamydomonas reinhardtii]
Evalue: 1e-37 | Bitscore: 161
Identities = 97/256 (37%), Positives = 136/256 (53%), Gaps = 33/256 (12%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot06g01520 |
chrom06.0001 [222144..223316]
Evalue: 2e-23 | Bitscore: 104
Identities = 81/244 (33%), Positives = 121/244 (49%), Gaps = 17/244 (6%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| A2SRL0 |
Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)
Evalue: 3e-07 | Bitscore: 56
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 19/154 (12%) |
SwissP |
Show Blast
|
| B1L6Z7 |
Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Evalue: 4e-06 | Bitscore: 52
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 12/151 (7%) |
SwissP |
Show Blast
|
| A3CW74 |
Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Evalue: 7e-06 | Bitscore: 51
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 21/155 (13%) |
SwissP |
Show Blast
|
| Q9UWY6 |
Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus GN=ubiA-2 PE=1 SV=1
Evalue: 1e-05 | Bitscore: 50
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%) |
SwissP |
Show Blast
|
| A4YI21 |
Digeranylgeranylglyceryl phosphate synthase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1933 PE=3
Evalue: 3e-05 | Bitscore: 49
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%) |
SwissP |
Show Blast
|
| Q18J00 |
Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1884A PE=3 SV=1
Evalue: 5e-05 | Bitscore: 48
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 14/178 (7%) |
SwissP |
Show Blast
|
| Q12VF3 |
Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Evalue: 0.0003 | Bitscore: 46
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 17/153 (11%) |
SwissP |
Show Blast
|
| Q4J8K2 |
Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius GN=Saci_1565 PE=3 SV=1
Evalue: 0.0004 | Bitscore: 45
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 24/212 (11%) |
SwissP |
Show Blast
|
| A0B8A0 |
Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
Evalue: 0.0007 | Bitscore: 45
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 9/148 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT2G18950.1 |
| Symbols: TPT1, ATHPT, HPT, VTE2, HPT1 | HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); prenyltransferase |
Evalue: 9e-37 | Bitscore: 150
Identities = 90/245 (36%), Positives = 138/245 (56%), Gaps = 14/245 (5%) |
Tair |
Show Blast
|
| AT3G11945.1 |
| Symbols: ATHST | ATHST; prenyltransferase | chr3:3780047-3782886 REVERSE
Evalue: 2e-25 | Bitscore: 113
Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 15/243 (6%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | CH1b_PPT |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 547998..548742 |
Strand + |
| EST ID | CTZ66-B08.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ72-G01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ89-E12.y1d-s |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 427111..427747,735318..735341 |
Strand - |
| EST ID | CTZ91-F12.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
| EST ID | CTZ93-F01.x1d-t |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. |
| Mapping Location | 506817..507544,712801..712813 |
Strand + |
|
