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Ostreococcus tauri


Gene ID
Ot07g02450
Locus
Ot07g02450
Functional Description
Polymerase (DNA-directed), delta 4 (predicted) (ISS)
Gene Type
protein-coding gene
Contig
chrom07
Last Modified On
09 March 2010 4h50
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Polymerase (DNA-directed), delta 4 (predicted) (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
nucleus

Molecular Function
n/a
Biological Process
1.
DNA replication

Protein Domains 


Domain IDDescriptionDatabase
IPR007218 DNA polymerase delta, subunit 4 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL54518.1 Polymerase (ISS) [Ostreococcus tauri]
Evalue: 2e-58 | Bitscore: 228
Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%)		 NCBI
Show Blast
XP_001418707.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-22 | Bitscore: 106
Identities = 52/66 (78%), Positives = 56/66 (84%), Gaps = 1/66 (1%)		 NCBI
Show Blast
ABK23801.1 unknown [Picea sitchensis]
Evalue: 5e-12 | Bitscore: 73
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 8/103 (7%)		 NCBI
Show Blast
XP_001743111.1 hypothetical protein [Monosiga brevicollis MX1]
Evalue: 7e-12 | Bitscore: 73
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 0/67 (0%)		 NCBI
Show Blast
XP_002524033.1 delta DNA polymerase, putative [Ricinus communis]
Evalue: 4e-11 | Bitscore: 70
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 9/95 (9%)		 NCBI
Show Blast
XP_002500135.1 predicted protein [Micromonas sp. RCC299]
Evalue: 6e-11 | Bitscore: 70
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 0/69 (0%)		 NCBI
Show Blast
NP_001013213.1 DNA-directed DNA polymerase delta 4 [Rattus norvegicus]
Evalue: 2e-10 | Bitscore: 68
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)		 NCBI
Show Blast
NP_081472.1 DNA polymerase delta subunit 4 [Mus musculus] sp|Q9CWP8.1|DPOD4_MOUSE RecName: Full=DNA polymerase delta subunit 4; AltName: Full=DNA
Evalue: 2e-10 | Bitscore: 68
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 4/104 (3%)		 NCBI
Show Blast
NP_001069949.1 DNA polymerase delta subunit 4 [Bos taurus] sp|Q3T0X9.1|DPOD4_BOVIN RecName: Full=DNA polymerase delta subunit 4; AltName: Full=DNA
Evalue: 2e-10 | Bitscore: 68
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 4/104 (3%)		 NCBI
Show Blast
XP_854661.1 PREDICTED: similar to DNA polymerase delta subunit 4 (DNA polymerase delta subunit p12) [Canis familiaris]
Evalue: 6e-10 | Bitscore: 67
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 4/104 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
OT07G02450
Redo Blast
CDS Length
351 nucleotides
CDS Sequence

Protein 

Locus ID
OT07G02450
Redo Blast
Protein Length
117 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a