- Gene ID
- Ot07g00720
- Locus
- Ot07g00720
- Functional Description
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 4h22
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_001418839.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-117 | Bitscore: 423
Identities = 203/203 (100%), Positives = 203/203 (100%), Gaps = 0/203 (0%) |
NCBI |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 1e-105 | Bitscore: 380
Identities = 190/191 (99%), Positives = 191/191 (100%) |
GOS |
Show Blast
|
| EEH60972.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-103 | Bitscore: 376
Identities = 181/204 (88%), Positives = 191/204 (93%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| XP_002499489.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 1e-101 | Bitscore: 372
Identities = 179/204 (87%), Positives = 187/204 (91%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| XP_001703135.1 |
small rab-related GTPase [Chlamydomonas reinhardtii] sp|Q39571.1|YPTC1_CHLRE RecName: Full=GTP-binding protein YPTC1
Evalue: 2e-96 | Bitscore: 355
Identities = 175/204 (85%), Positives = 185/204 (90%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| XP_001767252.1 |
Rab1/RabD-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-95 | Bitscore: 352
Identities = 169/203 (83%), Positives = 182/203 (89%), Gaps = 0/203 (0%) |
NCBI |
Show Blast
|
| XP_001767620.1 |
Rab1/RabD-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 7e-95 | Bitscore: 350
Identities = 169/203 (83%), Positives = 183/203 (90%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| Q39571 |
GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1
Evalue: 1e-94 | Bitscore: 345
Identities = 175/204 (85%), Positives = 185/204 (90%), Gaps = 3/204 (1%) |
SwissP |
Show Blast
|
| ABK21206.1 |
unknown [Picea sitchensis]
Evalue: 5e-93 | Bitscore: 343
Identities = 170/203 (83%), Positives = 182/203 (89%), Gaps = 2/203 (0%) |
NCBI |
Show Blast
|
| XP_002531780.1 |
protein with unknown function [Ricinus communis]
Evalue: 6e-93 | Bitscore: 343
Identities = 170/204 (83%), Positives = 179/204 (87%), Gaps = 4/204 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 1e-105 | Bitscore: 380
Identities = 190/191 (99%), Positives = 191/191 (100%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 2e-35 | Bitscore: 148
Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 3/160 (1%) |
GOS |
Show Blast
|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 6e-31 | Bitscore: 133
Identities = 74/160 (46%), Positives = 104/160 (65%), Gaps = 7/160 (4%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 9e-31 | Bitscore: 132
Identities = 74/190 (38%), Positives = 104/190 (54%), Gaps = 9/190 (4%) |
GOS |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 5e-30 | Bitscore: 130
Identities = 69/166 (41%), Positives = 94/166 (56%), Gaps = 4/166 (2%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 6e-30 | Bitscore: 130
Identities = 68/174 (39%), Positives = 104/174 (59%), Gaps = 1/174 (0%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 5e-28 | Bitscore: 123
Identities = 69/175 (39%), Positives = 109/175 (62%), Gaps = 2/175 (1%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 2e-27 | Bitscore: 121
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 2/196 (1%) |
GOS |
Show Blast
|
| EAD18748.1 |
unknown [environmental sequence]
Evalue: 7e-26 | Bitscore: 116
Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 5/137 (3%) |
GOS |
Show Blast
|
| EAK39351.1 |
unknown [environmental sequence]
Evalue: 4e-25 | Bitscore: 114
Identities = 60/166 (36%), Positives = 100/166 (60%), Gaps = 2/166 (1%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_001418839.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-117 | Bitscore: 423
Identities = 203/203 (100%), Positives = 203/203 (100%), Gaps = 0/203 (0%) |
NCBI |
Show Blast
|
| EEH60972.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-103 | Bitscore: 376
Identities = 181/204 (88%), Positives = 191/204 (93%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| XP_002499489.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 1e-101 | Bitscore: 372
Identities = 179/204 (87%), Positives = 187/204 (91%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| XP_001703135.1 |
small rab-related GTPase [Chlamydomonas reinhardtii] sp|Q39571.1|YPTC1_CHLRE RecName: Full=GTP-binding protein YPTC1
Evalue: 2e-96 | Bitscore: 355
Identities = 175/204 (85%), Positives = 185/204 (90%), Gaps = 3/204 (1%) |
NCBI |
Show Blast
|
| XP_001767252.1 |
Rab1/RabD-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-95 | Bitscore: 352
Identities = 169/203 (83%), Positives = 182/203 (89%), Gaps = 0/203 (0%) |
NCBI |
Show Blast
|
| XP_001767620.1 |
Rab1/RabD-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 7e-95 | Bitscore: 350
Identities = 169/203 (83%), Positives = 183/203 (90%), Gaps = 1/203 (0%) |
NCBI |
Show Blast
|
| ABK21206.1 |
unknown [Picea sitchensis]
Evalue: 5e-93 | Bitscore: 343
Identities = 170/203 (83%), Positives = 182/203 (89%), Gaps = 2/203 (0%) |
NCBI |
Show Blast
|
| XP_002531780.1 |
protein with unknown function [Ricinus communis]
Evalue: 6e-93 | Bitscore: 343
Identities = 170/204 (83%), Positives = 179/204 (87%), Gaps = 4/204 (1%) |
NCBI |
Show Blast
|
| CAA98160.1 |
RAB1C [Lotus japonicus]
Evalue: 8e-93 | Bitscore: 343
Identities = 169/203 (83%), Positives = 176/203 (86%), Gaps = 3/203 (1%) |
NCBI |
Show Blast
|
| XP_002265463.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 8e-93 | Bitscore: 343
Identities = 170/204 (83%), Positives = 178/204 (87%), Gaps = 4/204 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 6e-47 | Bitscore: 181
Identities = 90/162 (55%), Positives = 120/162 (74%), Gaps = 5/162 (3%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 1e-42 | Bitscore: 167
Identities = 82/160 (51%), Positives = 112/160 (70%), Gaps = 3/160 (1%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 5e-34 | Bitscore: 139
Identities = 82/196 (41%), Positives = 112/196 (57%), Gaps = 31/196 (15%) |
Self |
Show Blast
|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 1e-30 | Bitscore: 127
Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 2/180 (1%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 2e-29 | Bitscore: 123
Identities = 68/160 (42%), Positives = 97/160 (60%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 1e-22 | Bitscore: 100
Identities = 66/207 (31%), Positives = 95/207 (45%), Gaps = 27/207 (13%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 8e-22 | Bitscore: 98
Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 17/178 (9%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 9e-15 | Bitscore: 75
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 1e-13 | Bitscore: 70
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 5/160 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q39571 |
GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1
Evalue: 1e-94 | Bitscore: 345
Identities = 175/204 (85%), Positives = 185/204 (90%), Gaps = 3/204 (1%) |
SwissP |
Show Blast
|
| P31584 |
GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Evalue: 3e-90 | Bitscore: 330
Identities = 172/203 (84%), Positives = 180/203 (88%), Gaps = 1/203 (0%) |
SwissP |
Show Blast
|
| Q05737 |
GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Evalue: 7e-87 | Bitscore: 319
Identities = 163/204 (79%), Positives = 177/204 (86%), Gaps = 4/204 (1%) |
SwissP |
Show Blast
|
| P40392 |
Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2
Evalue: 1e-86 | Bitscore: 318
Identities = 162/203 (79%), Positives = 174/203 (85%), Gaps = 2/203 (0%) |
SwissP |
Show Blast
|
| P33723 |
GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1
Evalue: 3e-85 | Bitscore: 314
Identities = 155/203 (76%), Positives = 169/203 (83%) |
SwissP |
Show Blast
|
| Q05974 |
Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Evalue: 1e-84 | Bitscore: 312
Identities = 160/204 (78%), Positives = 175/204 (85%), Gaps = 3/204 (1%) |
SwissP |
Show Blast
|
| P34139 |
Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2
Evalue: 2e-84 | Bitscore: 311
Identities = 155/204 (75%), Positives = 172/204 (84%), Gaps = 3/204 (1%) |
SwissP |
Show Blast
|
| P28188 |
Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3
Evalue: 3e-84 | Bitscore: 310
Identities = 157/207 (75%), Positives = 172/207 (83%), Gaps = 10/207 (4%) |
SwissP |
Show Blast
|
| P22125 |
Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1
Evalue: 5e-84 | Bitscore: 310
Identities = 161/201 (80%), Positives = 172/201 (85%), Gaps = 9/201 (4%) |
SwissP |
Show Blast
|
| Q6NYB7 |
Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Evalue: 8e-84 | Bitscore: 309
Identities = 155/182 (85%), Positives = 164/182 (90%), Gaps = 2/182 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G47200.1 |
| Symbols: AtRABD2b, AtRab1A | AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b); GTP binding |
Evalue: 2e-88 | Bitscore: 321
Identities = 162/203 (79%), Positives = 174/203 (85%), Gaps = 3/203 (1%) |
Tair |
Show Blast
|
| AT4G17530.1 |
| Symbols: ATRAB1C, ATRABD2C, RAB1C | RAB1C; GTP binding | chr4:9773734-9775437 REVERSE
Evalue: 2e-88 | Bitscore: 321
Identities = 161/203 (79%), Positives = 173/203 (85%), Gaps = 3/203 (1%) |
Tair |
Show Blast
|
| AT1G02130.1 |
| Symbols: AtRab1B, Ara-5, AtRABD2a, ARA5, ATRAB1B | ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B);
Evalue: 3e-85 | Bitscore: 310
Identities = 157/207 (75%), Positives = 172/207 (83%), Gaps = 10/207 (4%) |
Tair |
Show Blast
|
| AT3G11730.1 |
| Symbols: AtRABD1, ATFP8 | ATFP8 (Arabidopsis Rab GTPase homolog D1); GTP binding | chr3:3709496-3711403 REVERSE
Evalue: 2e-75 | Bitscore: 278
Identities = 139/203 (68%), Positives = 163/203 (80%), Gaps = 1/203 (0%) |
Tair |
Show Blast
|
| AT5G59840.1 |
| Symbols: | Ras-related GTP-binding family protein | chr5:24124676-24126275 REVERSE
Evalue: 4e-60 | Bitscore: 227
Identities = 114/204 (55%), Positives = 152/204 (74%), Gaps = 4/204 (1%) |
Tair |
Show Blast
|
| AT3G53610.1 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 8e-60 | Bitscore: 226
Identities = 116/207 (56%), Positives = 156/207 (75%), Gaps = 10/207 (4%) |
Tair |
Show Blast
|
| AT3G53610.2 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 8e-60 | Bitscore: 226
Identities = 116/207 (56%), Positives = 156/207 (75%), Gaps = 10/207 (4%) |
Tair |
Show Blast
|
| AT3G53610.3 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8 | chr3:19887509-19889242 REVERSE
Evalue: 8e-60 | Bitscore: 226
Identities = 116/207 (56%), Positives = 156/207 (75%), Gaps = 10/207 (4%) |
Tair |
Show Blast
|
| AT3G46060.3 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 1e-59 | Bitscore: 225
Identities = 115/205 (56%), Positives = 150/205 (73%), Gaps = 6/205 (2%) |
Tair |
Show Blast
|
| AT3G46060.2 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 1e-59 | Bitscore: 225
Identities = 115/205 (56%), Positives = 150/205 (73%), Gaps = 6/205 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
