- Gene ID
- Ot07g00700
- Locus
- Ot07g00700
- Functional Description
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Gene Type
- protein-coding gene
- Contig
- chrom07
- Last Modified On
- 09 March 2010 4h22
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54343.1 |
YptC4 (ISS) [Ostreococcus tauri]
Evalue: 1e-122 | Bitscore: 442
Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%) |
NCBI |
Show Blast
|
| XP_001418612.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-88 | Bitscore: 328
Identities = 168/216 (77%), Positives = 182/216 (84%), Gaps = 5/216 (2%) |
NCBI |
Show Blast
|
| XP_001695070.1 |
small rab-related GTPase [Chlamydomonas reinhardtii]
Evalue: 9e-84 | Bitscore: 313
Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 8/218 (3%) |
NCBI |
Show Blast
|
| XP_001782821.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-82 | Bitscore: 309
Identities = 143/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| NP_001053048.1 |
Os04g0470100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-82 | Bitscore: 308
Identities = 144/189 (76%), Positives = 167/189 (88%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001763949.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-82 | Bitscore: 308
Identities = 142/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001777072.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-82 | Bitscore: 308
Identities = 143/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| ABN08862.1 |
Ras GTPase; Sigma-54 factor, interaction region [Medicago truncatula]
Evalue: 3e-82 | Bitscore: 308
Identities = 146/200 (73%), Positives = 169/200 (84%), Gaps = 2/200 (1%) |
NCBI |
Show Blast
|
| Q39570 |
GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1
Evalue: 1e-82 | Bitscore: 305
Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 8/218 (3%) |
SwissP |
Show Blast
|
| P36863 |
GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1
Evalue: 2e-82 | Bitscore: 305
Identities = 149/221 (67%), Positives = 178/221 (80%), Gaps = 14/221 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC78656.1 |
unknown [environmental sequence]
Evalue: 1e-42 | Bitscore: 172
Identities = 88/118 (74%), Positives = 100/118 (84%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 4e-38 | Bitscore: 157
Identities = 80/157 (50%), Positives = 107/157 (68%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 9e-34 | Bitscore: 142
Identities = 69/161 (42%), Positives = 106/161 (65%), Gaps = 1/161 (0%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 3e-31 | Bitscore: 134
Identities = 77/181 (42%), Positives = 115/181 (63%), Gaps = 4/181 (2%) |
GOS |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 3e-31 | Bitscore: 134
Identities = 74/200 (37%), Positives = 104/200 (52%), Gaps = 21/200 (10%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 2e-30 | Bitscore: 131
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 2/182 (1%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 2e-29 | Bitscore: 128
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 4/153 (2%) |
GOS |
Show Blast
|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 2e-29 | Bitscore: 128
Identities = 62/109 (56%), Positives = 84/109 (77%) |
GOS |
Show Blast
|
| EAD18748.1 |
unknown [environmental sequence]
Evalue: 7e-24 | Bitscore: 109
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 5/137 (3%) |
GOS |
Show Blast
|
| EAC00141.1 |
unknown [environmental sequence]
Evalue: 2e-23 | Bitscore: 108
Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 5/157 (3%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL54343.1 |
YptC4 (ISS) [Ostreococcus tauri]
Evalue: 1e-122 | Bitscore: 442
Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%) |
NCBI |
Show Blast
|
| XP_001418612.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-88 | Bitscore: 328
Identities = 168/216 (77%), Positives = 182/216 (84%), Gaps = 5/216 (2%) |
NCBI |
Show Blast
|
| XP_001695070.1 |
small rab-related GTPase [Chlamydomonas reinhardtii]
Evalue: 9e-84 | Bitscore: 313
Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 8/218 (3%) |
NCBI |
Show Blast
|
| Q39570 |
RecName: Full=GTP-binding protein YPTC4
Evalue: 2e-83 | Bitscore: 312
Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 8/218 (3%) |
NCBI |
Show Blast
|
| P36863 |
RecName: Full=GTP-binding protein yptV4; AltName: Full=RAB2 homolog
Evalue: 2e-83 | Bitscore: 312
Identities = 149/221 (67%), Positives = 178/221 (80%), Gaps = 14/221 (6%) |
NCBI |
Show Blast
|
| XP_001782821.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-82 | Bitscore: 309
Identities = 143/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| NP_001053048.1 |
Os04g0470100 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-82 | Bitscore: 308
Identities = 144/189 (76%), Positives = 167/189 (88%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001763949.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-82 | Bitscore: 308
Identities = 142/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001777072.1 |
Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-82 | Bitscore: 308
Identities = 143/189 (75%), Positives = 166/189 (87%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| ABN08862.1 |
Ras GTPase; Sigma-54 factor, interaction region [Medicago truncatula]
Evalue: 3e-82 | Bitscore: 308
Identities = 146/200 (73%), Positives = 169/200 (84%), Gaps = 2/200 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 2e-39 | Bitscore: 157
Identities = 80/157 (50%), Positives = 107/157 (68%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 8e-34 | Bitscore: 138
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 12/216 (5%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 2e-31 | Bitscore: 130
Identities = 75/176 (42%), Positives = 103/176 (58%), Gaps = 19/176 (10%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 5e-30 | Bitscore: 125
Identities = 65/156 (41%), Positives = 98/156 (62%) |
Self |
Show Blast
|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 4e-23 | Bitscore: 102
Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 3/182 (1%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 2e-21 | Bitscore: 97
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 22/185 (11%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 2e-19 | Bitscore: 90
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 9/158 (5%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 2e-13 | Bitscore: 70
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 3/147 (2%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 7e-13 | Bitscore: 68
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 5/158 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q39570 |
GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1
Evalue: 1e-82 | Bitscore: 305
Identities = 150/218 (68%), Positives = 177/218 (81%), Gaps = 8/218 (3%) |
SwissP |
Show Blast
|
| P36863 |
GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1
Evalue: 2e-82 | Bitscore: 305
Identities = 149/221 (67%), Positives = 178/221 (80%), Gaps = 14/221 (6%) |
SwissP |
Show Blast
|
| P49104 |
Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1
Evalue: 3e-81 | Bitscore: 301
Identities = 144/189 (76%), Positives = 165/189 (87%) |
SwissP |
Show Blast
|
| P49103 |
Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1
Evalue: 1e-80 | Bitscore: 299
Identities = 143/189 (75%), Positives = 164/189 (86%) |
SwissP |
Show Blast
|
| Q05975 |
Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1
Evalue: 1e-78 | Bitscore: 292
Identities = 136/188 (72%), Positives = 164/188 (87%) |
SwissP |
Show Blast
|
| Q4R4X6 |
Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1
Evalue: 2e-78 | Bitscore: 291
Identities = 135/188 (71%), Positives = 164/188 (87%) |
SwissP |
Show Blast
|
| P61019 |
Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1
Evalue: 2e-78 | Bitscore: 291
Identities = 135/188 (71%), Positives = 164/188 (87%) |
SwissP |
Show Blast
|
| P61105 |
Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1
Evalue: 2e-78 | Bitscore: 291
Identities = 135/188 (71%), Positives = 164/188 (87%) |
SwissP |
Show Blast
|
| Q5R6B6 |
Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1
Evalue: 2e-78 | Bitscore: 291
Identities = 135/188 (71%), Positives = 164/188 (87%) |
SwissP |
Show Blast
|
| Q01971 |
Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1
Evalue: 3e-78 | Bitscore: 291
Identities = 136/192 (70%), Positives = 165/192 (85%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G17170.1 |
| Symbols: AtRABB1c, AtRab2A, AT-RAB2 | AT-RAB2 (Arabidopsis Rab GTPase homolog B1c); GTP binding | chr4:9644919-9646231
Evalue: 1e-80 | Bitscore: 295
Identities = 144/200 (72%), Positives = 168/200 (84%), Gaps = 2/200 (1%) |
Tair |
Show Blast
|
| AT4G35860.1 |
| Symbols: ATRABB1B, ATGB2, ATRAB2C | ATGB2/ATRAB2C/ATRABB1B (GTP-BINDING 2); GTP binding | chr4:16987121-16988842
Evalue: 1e-78 | Bitscore: 288
Identities = 142/202 (70%), Positives = 168/202 (83%), Gaps = 6/202 (2%) |
Tair |
Show Blast
|
| AT4G17160.1 |
| Symbols: AtRab2B, AtRABB1a | AtRABB1a/AtRab2B (Arabidopsis Rab GTPase homolog B1a); GTP binding | chr4:9641991-9643552
Evalue: 9e-71 | Bitscore: 263
Identities = 131/215 (60%), Positives = 159/215 (73%), Gaps = 11/215 (5%) |
Tair |
Show Blast
|
| AT4G35860.2 |
| Symbols: ATRABB1B, ATGB2, ATRAB2C | ATGB2/ATRAB2C/ATRABB1B (GTP-BINDING 2) | chr4:16987121-16988590 REVERSE
Evalue: 4e-53 | Bitscore: 204
Identities = 101/156 (64%), Positives = 125/156 (80%), Gaps = 6/156 (3%) |
Tair |
Show Blast
|
| AT1G16920.1 |
| Symbols: ATRABA4B, ATRABA1B, RAB11 | RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding | chr1:5787482-5789140
Evalue: 2e-46 | Bitscore: 181
Identities = 90/158 (56%), Positives = 115/158 (72%) |
Tair |
Show Blast
|
| AT1G09630.1 |
| Symbols: ATRABA2A, ATRAB11C | ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding | chr1:3118352-3119573 REVERSE
Evalue: 4e-46 | Bitscore: 181
Identities = 89/158 (56%), Positives = 117/158 (74%) |
Tair |
Show Blast
|
| AT3G46830.1 |
| Symbols: AtRab11A, AtRABA2c | AtRABA2c/AtRab11A (Arabidopsis Rab GTPase homolog A2c); GTP binding |
Evalue: 1e-45 | Bitscore: 179
Identities = 88/165 (53%), Positives = 118/165 (71%) |
Tair |
Show Blast
|
| AT5G45750.1 |
| Symbols: AtRABA1c | AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding | chr5:18576545-18577866 FORWARD
Evalue: 1e-45 | Bitscore: 179
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 8/213 (3%) |
Tair |
Show Blast
|
| AT5G60860.1 |
| Symbols: AtRABA1f | AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding | chr5:24501976-24502791 FORWARD
Evalue: 4e-45 | Bitscore: 177
Identities = 90/186 (48%), Positives = 121/186 (65%) |
Tair |
Show Blast
|
| AT5G59150.1 |
| Symbols: AtRABA2d | AtRABA2d (Arabidopsis Rab GTPase homolog A2d); GTP binding | chr5:23894084-23895470 FORWARD
Evalue: 8e-45 | Bitscore: 176
Identities = 86/158 (54%), Positives = 116/158 (73%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
