- Gene ID
- Ot06g03460
- Locus
- Ot06g03460
- Functional Description
- unnamed product
- Gene Type
- protein-coding gene
- Contig
- chrom06
- Last Modified On
- 09 March 2010 3h46
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- unnamed product
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
obsolete electron transporter activity
2.
iron ion binding
- Biological Process
-
1.
obsolete electron transport
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR001041 |
Ferredoxin |
InterPro |
|
IPR012675 |
Beta-grasp fold, ferredoxin-type |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53607.1 |
putative ferredoxin (ISS) [Ostreococcus tauri]
Evalue: 8e-67 | Bitscore: 255
Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%) |
NCBI |
Show Blast
|
| XP_001418268.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-44 | Bitscore: 180
Identities = 88/102 (86%), Positives = 96/102 (94%), Gaps = 0/102 (0%) |
NCBI |
Show Blast
|
| XP_002504492.1 |
ferredoxin, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 3e-36 | Bitscore: 154
Identities = 75/124 (60%), Positives = 97/124 (78%), Gaps = 1/124 (0%) |
NCBI |
Show Blast
|
| EEH55837.1 |
ferredoxin, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 4e-29 | Bitscore: 130
Identities = 67/123 (54%), Positives = 91/123 (73%), Gaps = 1/123 (0%) |
NCBI |
Show Blast
|
| XP_001700106.1 |
apoferredoxin [Chlamydomonas reinhardtii]
Evalue: 3e-26 | Bitscore: 121
Identities = 66/120 (55%), Positives = 85/120 (70%), Gaps = 7/120 (5%) |
NCBI |
Show Blast
|
| CBI26257.1 |
unnamed protein product [Vitis vinifera]
Evalue: 5e-26 | Bitscore: 120
Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%) |
NCBI |
Show Blast
|
| XP_002282517.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-25 | Bitscore: 119
Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%) |
NCBI |
Show Blast
|
| XP_002517134.1 |
Ferredoxin-1, putative [Ricinus communis]
Evalue: 7e-25 | Bitscore: 116
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 1/105 (0%) |
NCBI |
Show Blast
|
| XP_002314698.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-24 | Bitscore: 114
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 2/115 (1%) |
NCBI |
Show Blast
|
| ACU15338.1 |
unknown [Glycine max]
Evalue: 4e-24 | Bitscore: 114
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 2/124 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAE82298.1 |
unknown [environmental sequence]
Evalue: 6e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAI59304.1 |
unknown [environmental sequence]
Evalue: 7e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAJ82630.1 |
unknown [environmental sequence]
Evalue: 7e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAG83706.1 |
unknown [environmental sequence]
Evalue: 7e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAK08777.1 |
unknown [environmental sequence]
Evalue: 7e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAG05201.1 |
unknown [environmental sequence]
Evalue: 7e-12 | Bitscore: 69
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAC00677.1 |
unknown [environmental sequence]
Evalue: 8e-12 | Bitscore: 68
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAG83532.1 |
unknown [environmental sequence]
Evalue: 8e-12 | Bitscore: 68
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAI68912.1 |
unknown [environmental sequence]
Evalue: 1e-11 | Bitscore: 68
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| EAA98825.1 |
unknown [environmental sequence]
Evalue: 2e-11 | Bitscore: 67
Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 2/87 (2%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53607.1 |
putative ferredoxin (ISS) [Ostreococcus tauri]
Evalue: 8e-67 | Bitscore: 255
Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%) |
NCBI |
Show Blast
|
| XP_001418268.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-44 | Bitscore: 180
Identities = 88/102 (86%), Positives = 96/102 (94%), Gaps = 0/102 (0%) |
NCBI |
Show Blast
|
| XP_002504492.1 |
ferredoxin, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 3e-36 | Bitscore: 154
Identities = 75/124 (60%), Positives = 97/124 (78%), Gaps = 1/124 (0%) |
NCBI |
Show Blast
|
| EEH55837.1 |
ferredoxin, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 4e-29 | Bitscore: 130
Identities = 67/123 (54%), Positives = 91/123 (73%), Gaps = 1/123 (0%) |
NCBI |
Show Blast
|
| XP_001700106.1 |
apoferredoxin [Chlamydomonas reinhardtii]
Evalue: 3e-26 | Bitscore: 121
Identities = 66/120 (55%), Positives = 85/120 (70%), Gaps = 7/120 (5%) |
NCBI |
Show Blast
|
| CBI26257.1 |
unnamed protein product [Vitis vinifera]
Evalue: 5e-26 | Bitscore: 120
Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%) |
NCBI |
Show Blast
|
| XP_002282517.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-25 | Bitscore: 119
Identities = 59/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%) |
NCBI |
Show Blast
|
| XP_002517134.1 |
Ferredoxin-1, putative [Ricinus communis]
Evalue: 7e-25 | Bitscore: 116
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 1/105 (0%) |
NCBI |
Show Blast
|
| XP_002314698.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-24 | Bitscore: 114
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 2/115 (1%) |
NCBI |
Show Blast
|
| ACU15338.1 |
unknown [Glycine max]
Evalue: 4e-24 | Bitscore: 114
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 2/124 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot18g00960 |
chrom18.0001 [146308..146892]
Evalue: 2e-07 | Bitscore: 49
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 6/84 (7%) |
Self |
Show Blast
|
| Ot06g01530 |
chrom06.0001 [223879..224745]
Evalue: 1e-06 | Bitscore: 46
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P00252 |
Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2
Evalue: 4e-13 | Bitscore: 73
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%) |
SwissP |
Show Blast
|
| Q9ZQG8 |
Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1
Evalue: 9e-13 | Bitscore: 72
Identities = 50/121 (41%), Positives = 64/121 (52%), Gaps = 2/121 (1%) |
SwissP |
Show Blast
|
| P00248 |
Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2
Evalue: 1e-12 | Bitscore: 72
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 2/87 (2%) |
SwissP |
Show Blast
|
| P14936 |
Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1
Evalue: 1e-12 | Bitscore: 71
Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 2/88 (2%) |
SwissP |
Show Blast
|
| P04669 |
Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1
Evalue: 2e-12 | Bitscore: 70
Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 2/109 (1%) |
SwissP |
Show Blast
|
| P14937 |
Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1
Evalue: 2e-12 | Bitscore: 70
Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 2/88 (2%) |
SwissP |
Show Blast
|
| P00244 |
Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2
Evalue: 4e-12 | Bitscore: 70
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 2/90 (2%) |
SwissP |
Show Blast
|
| P00247 |
Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2
Evalue: 5e-12 | Bitscore: 69
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 2/87 (2%) |
SwissP |
Show Blast
|
| O04683 |
Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1
Evalue: 6e-12 | Bitscore: 69
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 3/106 (2%) |
SwissP |
Show Blast
|
| P00254 |
Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2
Evalue: 7e-12 | Bitscore: 68
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 2/87 (2%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G14890.1 |
| Symbols: | ferredoxin family protein | chr4:8520882-8521346 FORWARD
Evalue: 3e-25 | Bitscore: 109
Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 3/110 (2%) |
Tair |
Show Blast
|
| AT2G27510.1 |
| Symbols: ATFD3 | ATFD3 (FERREDOXIN 3); electron carrier | chr2:11765359-11765826 REVERSE
Evalue: 8e-14 | Bitscore: 72
Identities = 50/121 (41%), Positives = 64/121 (52%), Gaps = 2/121 (1%) |
Tair |
Show Blast
|
| AT1G10960.1 |
| Symbols: ATFD1 | ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding
Evalue: 1e-10 | Bitscore: 61
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%) |
Tair |
Show Blast
|
| AT5G10000.1 |
| Symbols: ATFD4 | ATFD4 (FERREDOXIN 4); electron carrier | chr5:3126710-3127156 FORWARD
Evalue: 2e-10 | Bitscore: 61
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 2/111 (1%) |
Tair |
Show Blast
|
| AT1G60950.1 |
| Symbols: ATFD2, FED A | FED A (FERREDOXIN 2); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster
Evalue: 2e-10 | Bitscore: 60
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 3/107 (2%) |
Tair |
Show Blast
|
| AT1G32550.1 |
| Symbols: | ferredoxin family protein | chr1:11771949-11774097 REVERSE
Evalue: 9e-09 | Bitscore: 55
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
