- Gene ID
- Ot06g03220
- Locus
- Ot06g03220
- Functional Description
- Ras-related small GTPase, Rho type (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom06
- Last Modified On
- 09 March 2010 3h43
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Ras-related small GTPase, Rho type (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
GTP binding
- Biological Process
-
1.
small GTPase mediated signal transduction
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53581.1 |
Rac3 (ISS) [Ostreococcus tauri]
Evalue: 5e-108 | Bitscore: 393
Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001418257.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-87 | Bitscore: 324
Identities = 152/186 (81%), Positives = 169/186 (90%), Gaps = 1/186 (0%) |
NCBI |
Show Blast
|
| EEH53618.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-51 | Bitscore: 206
Identities = 100/176 (56%), Positives = 124/176 (70%), Gaps = 8/176 (4%) |
NCBI |
Show Blast
|
| pdb|2J0V|A |
Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom
Evalue: 4e-50 | Bitscore: 201
Identities = 101/180 (56%), Positives = 127/180 (70%), Gaps = 11/180 (6%) |
NCBI |
Show Blast
|
| XP_002440823.1 |
hypothetical protein SORBIDRAFT_09g007420 [Sorghum bicolor]
Evalue: 7e-50 | Bitscore: 200
Identities = 97/175 (55%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| EEC70235.1 |
hypothetical protein OsI_01007 [Oryza sativa Indica Group]
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| NP_001042486.1 |
Os01g0229400 [Oryza sativa (japonica cultivar-group)] sp|Q9SSX0.1|RAC1_ORYSJ RecName: Full=Rac-like GTP-binding protein 1; AltName: Full=OsRac1
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| AAX77217.1 |
Rac3 [Gossypium hirsutum]
Evalue: 1e-49 | Bitscore: 199
Identities = 101/189 (53%), Positives = 131/189 (69%), Gaps = 9/189 (4%) |
NCBI |
Show Blast
|
| EEE54166.1 |
hypothetical protein OsJ_00979 [Oryza sativa Japonica Group]
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| NP_195228.1 |
ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase [Arabidopsis thaliana]
Evalue: 2e-49 | Bitscore: 199
Identities = 97/175 (55%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC18906.1 |
unknown [environmental sequence]
Evalue: 2e-37 | Bitscore: 154
Identities = 80/174 (45%), Positives = 113/174 (64%), Gaps = 11/174 (6%) |
GOS |
Show Blast
|
| EAF80697.1 |
unknown [environmental sequence]
Evalue: 3e-24 | Bitscore: 110
Identities = 50/92 (54%), Positives = 68/92 (73%), Gaps = 1/92 (1%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 7e-18 | Bitscore: 89
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 6/161 (3%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 6e-13 | Bitscore: 73
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 6/158 (3%) |
GOS |
Show Blast
|
| EAB81203.1 |
unknown [environmental sequence]
Evalue: 1e-12 | Bitscore: 72
Identities = 32/51 (62%), Positives = 43/51 (84%), Gaps = 1/51 (1%) |
GOS |
Show Blast
|
| EAD89932.1 |
unknown [environmental sequence]
Evalue: 4e-12 | Bitscore: 70
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 13/160 (8%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 5e-12 | Bitscore: 70
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 22/194 (11%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 4e-11 | Bitscore: 67
Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 5/157 (3%) |
GOS |
Show Blast
|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 4e-10 | Bitscore: 63
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 11/121 (9%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 7e-09 | Bitscore: 60
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 12/184 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53581.1 |
Rac3 (ISS) [Ostreococcus tauri]
Evalue: 5e-108 | Bitscore: 393
Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| XP_001418257.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-87 | Bitscore: 324
Identities = 152/186 (81%), Positives = 169/186 (90%), Gaps = 1/186 (0%) |
NCBI |
Show Blast
|
| EEH53618.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-51 | Bitscore: 206
Identities = 100/176 (56%), Positives = 124/176 (70%), Gaps = 8/176 (4%) |
NCBI |
Show Blast
|
| pdb|2J0V|A |
Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom
Evalue: 4e-50 | Bitscore: 201
Identities = 101/180 (56%), Positives = 127/180 (70%), Gaps = 11/180 (6%) |
NCBI |
Show Blast
|
| XP_002440823.1 |
hypothetical protein SORBIDRAFT_09g007420 [Sorghum bicolor]
Evalue: 7e-50 | Bitscore: 200
Identities = 97/175 (55%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| EEC70235.1 |
hypothetical protein OsI_01007 [Oryza sativa Indica Group]
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| NP_001042486.1 |
Os01g0229400 [Oryza sativa (japonica cultivar-group)] sp|Q9SSX0.1|RAC1_ORYSJ RecName: Full=Rac-like GTP-binding protein 1; AltName: Full=OsRac1
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| AAX77217.1 |
Rac3 [Gossypium hirsutum]
Evalue: 1e-49 | Bitscore: 199
Identities = 101/189 (53%), Positives = 131/189 (69%), Gaps = 9/189 (4%) |
NCBI |
Show Blast
|
| EEE54166.1 |
hypothetical protein OsJ_00979 [Oryza sativa Japonica Group]
Evalue: 1e-49 | Bitscore: 199
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| NP_195228.1 |
ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase [Arabidopsis thaliana]
Evalue: 2e-49 | Bitscore: 199
Identities = 97/175 (55%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 1e-16 | Bitscore: 81
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 6/161 (3%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 2e-13 | Bitscore: 70
Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 7/167 (4%) |
Self |
Show Blast
|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 9e-13 | Bitscore: 68
Identities = 41/157 (26%), Positives = 83/157 (52%), Gaps = 5/157 (3%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 1e-10 | Bitscore: 61
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 23/182 (12%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 4e-10 | Bitscore: 59
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 2/117 (1%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 2e-08 | Bitscore: 53
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 5/114 (4%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 5e-08 | Bitscore: 52
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 8/147 (5%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 3e-07 | Bitscore: 50
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 1e-06 | Bitscore: 47
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 36/189 (19%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q38912 |
Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1
Evalue: 4e-50 | Bitscore: 197
Identities = 97/175 (55%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
SwissP |
Show Blast
|
| Q68Y52 |
Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1
Evalue: 6e-50 | Bitscore: 196
Identities = 98/175 (56%), Positives = 124/175 (70%), Gaps = 9/175 (5%) |
SwissP |
Show Blast
|
| O82480 |
Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1
Evalue: 6e-50 | Bitscore: 196
Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 7/173 (4%) |
SwissP |
Show Blast
|
| Q9SSX0 |
Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1
Evalue: 7e-50 | Bitscore: 196
Identities = 96/175 (54%), Positives = 125/175 (71%), Gaps = 9/175 (5%) |
SwissP |
Show Blast
|
| Q6Z7L8 |
Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1
Evalue: 1e-49 | Bitscore: 196
Identities = 97/181 (53%), Positives = 123/181 (67%), Gaps = 9/181 (4%) |
SwissP |
Show Blast
|
| Q38903 |
Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1
Evalue: 4e-49 | Bitscore: 194
Identities = 96/174 (55%), Positives = 121/174 (69%), Gaps = 9/174 (5%) |
SwissP |
Show Blast
|
| Q6EP31 |
Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2
Evalue: 5e-49 | Bitscore: 193
Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 9/173 (5%) |
SwissP |
Show Blast
|
| Q67VP4 |
Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1
Evalue: 1e-48 | Bitscore: 192
Identities = 94/175 (53%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
SwissP |
Show Blast
|
| Q41254 |
Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1
Evalue: 2e-48 | Bitscore: 191
Identities = 95/173 (54%), Positives = 119/173 (68%), Gaps = 9/173 (5%) |
SwissP |
Show Blast
|
| Q38937 |
Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1
Evalue: 4e-48 | Bitscore: 190
Identities = 95/173 (54%), Positives = 121/173 (69%), Gaps = 9/173 (5%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G35020.1 |
| Symbols: ARAC3, ROP6, RHO1PS, ATROP6 | ARAC3/ATROP6/RHO1PS/ROP6 (rho-related protein from plants 6); GTP binding /
Evalue: 3e-51 | Bitscore: 197
Identities = 97/175 (55%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
Tair |
Show Blast
|
| AT4G28950.1 |
| Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 | ARAC7/ATRAC7/ATROP9/RAC7/ROP9 (RHO-RELATED PROTEIN FROM
Evalue: 6e-51 | Bitscore: 196
Identities = 97/173 (56%), Positives = 124/173 (71%), Gaps = 7/173 (4%) |
Tair |
Show Blast
|
| AT5G45970.1 |
| Symbols: ROP7, ATRAC2, ARAC2, ATROP7 | ARAC2 (RHO-RELATED PROTEIN FROM PLANTS 7); GTP binding | chr5:18660988-18662985
Evalue: 4e-50 | Bitscore: 194
Identities = 96/174 (55%), Positives = 121/174 (69%), Gaps = 9/174 (5%) |
Tair |
Show Blast
|
| AT1G75840.1 |
| Symbols: ARAC5, ATGP3, ROP4, ATROP4 | ATGP3/ATROP4 (RHO-LIKE GTP BINDING PROTEIN 4); GTP binding / GTPase |
Evalue: 4e-49 | Bitscore: 190
Identities = 95/173 (54%), Positives = 121/173 (69%), Gaps = 9/173 (5%) |
Tair |
Show Blast
|
| AT1G20090.1 |
| Symbols: ARAC4, ROP2, ATROP2, ATRAC4 | ARAC4/ATRAC4/ATROP2/ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding |
Evalue: 4e-49 | Bitscore: 190
Identities = 94/173 (54%), Positives = 121/173 (69%), Gaps = 9/173 (5%) |
Tair |
Show Blast
|
| AT3G48040.1 |
| Symbols: ARAC8, ATROP10, ROP10 | ARAC8/ATROP10/ROP10 (rho-related protein from plants 10); GTP binding / GTPase |
Evalue: 7e-49 | Bitscore: 189
Identities = 93/175 (53%), Positives = 122/175 (69%), Gaps = 9/175 (5%) |
Tair |
Show Blast
|
| AT2G44690.1 |
| Symbols: ARAC9, AtROP8, ROP8 | ARAC9/AtROP8/ROP8 (rho-related protein from plants 8); GTP binding |
Evalue: 1e-48 | Bitscore: 188
Identities = 97/191 (50%), Positives = 126/191 (65%), Gaps = 11/191 (5%) |
Tair |
Show Blast
|
| AT4G35950.1 |
| Symbols: ARAC6, RAC2, ATROP5 | ARAC6/ATROP5/RAC2 (RHO-RELATED PROTEIN FROM PLANTS 7); GTP binding |
Evalue: 2e-48 | Bitscore: 188
Identities = 93/173 (53%), Positives = 121/173 (69%), Gaps = 9/173 (5%) |
Tair |
Show Blast
|
| AT2G17800.1 |
| Symbols: ARAC1, ATGP2, ATRAC1, RAC1, ROP3, AtROP3 | ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein
Evalue: 3e-48 | Bitscore: 187
Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 9/173 (5%) |
Tair |
Show Blast
|
| AT2G17800.2 |
| Symbols: ARAC1, ATGP2, ATRAC1, RAC1, ROP3, AtROP3 | ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein
Evalue: 3e-48 | Bitscore: 187
Identities = 93/173 (53%), Positives = 120/173 (69%), Gaps = 9/173 (5%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST03196 |
Support Model | Y |
More Info |
| Mapping Location | 490663..491232 |
Strand + |
| EST ID | OtEST03210 |
Support Model | Y |
More Info |
| Mapping Location | 490678..491232 |
Strand + |
| EST ID | OtEST03265 |
Support Model | Y |
More Info |
| Mapping Location | 490678..491232 |
Strand + |
|
