- Gene ID
- Ot06g02360
- Locus
- Ot06g02360
- Functional Description
- GTPase Rab5/YPT51 and related small G protein superfamily GTPases (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom06
- Last Modified On
- 09 March 2010 3h27
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTPase Rab5/YPT51 and related small G protein superfamily GTPases (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
GTP binding
- Biological Process
-
1.
small GTPase mediated signal transduction
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53495.1 |
GTPase Rab5/YPT51 and related small G protein superfamily GTPases (ISS) [Ostreococcus tauri]
Evalue: 8e-126 | Bitscore: 452
Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%) |
NCBI |
Show Blast
|
| XP_001418223.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-77 | Bitscore: 293
Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 8/206 (3%) |
NCBI |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 5e-74 | Bitscore: 276
Identities = 154/201 (76%), Positives = 172/201 (85%), Gaps = 5/201 (2%) |
GOS |
Show Blast
|
| EEY59233.1 |
ras family GTPase, putative [Phytophthora infestans T30-4]
Evalue: 7e-49 | Bitscore: 197
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 1/161 (0%) |
NCBI |
Show Blast
|
| EEY55150.1 |
Rab21/Rab5 family GTPase, putative [Phytophthora infestans T30-4]
Evalue: 1e-48 | Bitscore: 196
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 1/161 (0%) |
NCBI |
Show Blast
|
| XP_001766629.1 |
Rab21-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 3e-48 | Bitscore: 195
Identities = 106/220 (48%), Positives = 149/220 (67%), Gaps = 16/220 (7%) |
NCBI |
Show Blast
|
| NP_001083402.1 |
hypothetical protein LOC398907 [Xenopus laevis]
Evalue: 4e-48 | Bitscore: 194
Identities = 95/208 (45%), Positives = 140/208 (67%), Gaps = 14/208 (6%) |
NCBI |
Show Blast
|
| NP_001016319.1 |
RAB21, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Evalue: 6e-48 | Bitscore: 194
Identities = 95/208 (45%), Positives = 140/208 (67%), Gaps = 14/208 (6%) |
NCBI |
Show Blast
|
| XP_001627091.1 |
predicted protein [Nematostella vectensis]
Evalue: 1e-47 | Bitscore: 193
Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 7/205 (3%) |
NCBI |
Show Blast
|
| XP_001948825.1 |
PREDICTED: similar to Ras-related small GTPase [Acyrthosiphon pisum]
Evalue: 5e-47 | Bitscore: 191
Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 5/205 (2%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 5e-74 | Bitscore: 276
Identities = 154/201 (76%), Positives = 172/201 (85%), Gaps = 5/201 (2%) |
GOS |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 2e-33 | Bitscore: 141
Identities = 77/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 1e-32 | Bitscore: 139
Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 16/195 (8%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 4e-29 | Bitscore: 127
Identities = 69/161 (42%), Positives = 98/161 (60%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 7e-28 | Bitscore: 123
Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 2/174 (1%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 5e-21 | Bitscore: 100
Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 4/161 (2%) |
GOS |
Show Blast
|
| EAD71502.1 |
unknown [environmental sequence]
Evalue: 4e-19 | Bitscore: 94
Identities = 51/105 (48%), Positives = 66/105 (62%) |
GOS |
Show Blast
|
| EAJ90355.1 |
unknown [environmental sequence]
Evalue: 2e-18 | Bitscore: 91
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 7/170 (4%) |
GOS |
Show Blast
|
| EAC00141.1 |
unknown [environmental sequence]
Evalue: 4e-16 | Bitscore: 84
Identities = 50/210 (23%), Positives = 110/210 (52%), Gaps = 11/210 (5%) |
GOS |
Show Blast
|
| EAD89932.1 |
unknown [environmental sequence]
Evalue: 3e-15 | Bitscore: 81
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 9/161 (5%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53495.1 |
GTPase Rab5/YPT51 and related small G protein superfamily GTPases (ISS) [Ostreococcus tauri]
Evalue: 8e-126 | Bitscore: 452
Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%) |
NCBI |
Show Blast
|
| XP_001418223.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-77 | Bitscore: 293
Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 8/206 (3%) |
NCBI |
Show Blast
|
| EEY59233.1 |
ras family GTPase, putative [Phytophthora infestans T30-4]
Evalue: 7e-49 | Bitscore: 197
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 1/161 (0%) |
NCBI |
Show Blast
|
| EEY55150.1 |
Rab21/Rab5 family GTPase, putative [Phytophthora infestans T30-4]
Evalue: 1e-48 | Bitscore: 196
Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 1/161 (0%) |
NCBI |
Show Blast
|
| XP_001766629.1 |
Rab21-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 3e-48 | Bitscore: 195
Identities = 106/220 (48%), Positives = 149/220 (67%), Gaps = 16/220 (7%) |
NCBI |
Show Blast
|
| NP_001083402.1 |
hypothetical protein LOC398907 [Xenopus laevis]
Evalue: 4e-48 | Bitscore: 194
Identities = 95/208 (45%), Positives = 140/208 (67%), Gaps = 14/208 (6%) |
NCBI |
Show Blast
|
| NP_001016319.1 |
RAB21, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Evalue: 6e-48 | Bitscore: 194
Identities = 95/208 (45%), Positives = 140/208 (67%), Gaps = 14/208 (6%) |
NCBI |
Show Blast
|
| XP_001627091.1 |
predicted protein [Nematostella vectensis]
Evalue: 1e-47 | Bitscore: 193
Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 7/205 (3%) |
NCBI |
Show Blast
|
| XP_001948825.1 |
PREDICTED: similar to Ras-related small GTPase [Acyrthosiphon pisum]
Evalue: 5e-47 | Bitscore: 191
Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 5/205 (2%) |
NCBI |
Show Blast
|
| ABD65439.1 |
Rab21 [Suberites domuncula]
Evalue: 6e-47 | Bitscore: 191
Identities = 90/175 (51%), Positives = 128/175 (73%), Gaps = 2/175 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 6e-31 | Bitscore: 128
Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%) |
Self |
Show Blast
|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 2e-29 | Bitscore: 123
Identities = 74/182 (40%), Positives = 100/182 (54%), Gaps = 4/182 (2%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 2e-22 | Bitscore: 100
Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 6/166 (3%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 4e-19 | Bitscore: 89
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 2/127 (1%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 3e-18 | Bitscore: 86
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 21/180 (11%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 5e-18 | Bitscore: 85
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 10/153 (6%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 2e-15 | Bitscore: 77
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 25/193 (12%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 2e-15 | Bitscore: 77
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 6/178 (3%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 9e-13 | Bitscore: 68
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 6/152 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9UL25 |
Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Evalue: 1e-45 | Bitscore: 182
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 13/213 (6%) |
SwissP |
Show Blast
|
| Q17R06 |
Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Evalue: 1e-45 | Bitscore: 182
Identities = 93/213 (43%), Positives = 140/213 (65%), Gaps = 13/213 (6%) |
SwissP |
Show Blast
|
| P55745 |
Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Evalue: 5e-45 | Bitscore: 181
Identities = 85/166 (51%), Positives = 122/166 (73%), Gaps = 1/166 (0%) |
SwissP |
Show Blast
|
| P35282 |
Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Evalue: 7e-45 | Bitscore: 180
Identities = 92/208 (44%), Positives = 136/208 (65%), Gaps = 14/208 (6%) |
SwissP |
Show Blast
|
| Q6AXT5 |
Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Evalue: 1e-44 | Bitscore: 179
Identities = 83/161 (51%), Positives = 120/161 (74%), Gaps = 1/161 (0%) |
SwissP |
Show Blast
|
| P34142 |
Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2
Evalue: 5e-43 | Bitscore: 174
Identities = 81/161 (50%), Positives = 112/161 (69%), Gaps = 1/161 (0%) |
SwissP |
Show Blast
|
| Q8WQ53 |
Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Evalue: 3e-40 | Bitscore: 164
Identities = 80/162 (49%), Positives = 117/162 (72%), Gaps = 1/162 (0%) |
SwissP |
Show Blast
|
| Q06AU6 |
Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Evalue: 1e-39 | Bitscore: 163
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 9/201 (4%) |
SwissP |
Show Blast
|
| Q0IIG7 |
Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Evalue: 3e-39 | Bitscore: 161
Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 9/201 (4%) |
SwissP |
Show Blast
|
| P61271 |
Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1
Evalue: 4e-39 | Bitscore: 160
Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 9/201 (4%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT3G54840.1 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6; GTP binding | chr3:20329575-20331760 FORWARD
Evalue: 6e-35 | Bitscore: 143
Identities = 76/190 (40%), Positives = 112/190 (58%), Gaps = 7/190 (3%) |
Tair |
Show Blast
|
| AT4G19640.1 |
| Symbols: Ara-7, AtRABF2b, AtRab5B, ARA7 | ARA7; GTP binding | chr4:10687451-10689459 REVERSE
Evalue: 9e-35 | Bitscore: 143
Identities = 75/162 (46%), Positives = 111/162 (68%), Gaps = 1/162 (0%) |
Tair |
Show Blast
|
| AT3G54840.2 |
| Symbols: AtRABF1, Ara-6, AtRab5C, ARA6 | ARA6 | chr3:20329575-20331715 FORWARD
Evalue: 3e-34 | Bitscore: 141
Identities = 70/169 (41%), Positives = 104/169 (61%) |
Tair |
Show Blast
|
| AT5G45130.1 |
| Symbols: AtRab5A, AtRABF2a, Rha1, RHA1 | RHA1 | chr5:18261722-18263287 FORWARD
Evalue: 8e-34 | Bitscore: 140
Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 1/162 (0%) |
Tair |
Show Blast
|
| AT1G02130.1 |
| Symbols: AtRab1B, Ara-5, AtRABD2a, ARA5, ATRAB1B | ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B);
Evalue: 3e-29 | Bitscore: 125
Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 11/205 (5%) |
Tair |
Show Blast
|
| AT4G39890.1 |
| Symbols: AtRABH1c | AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding | chr4:18506106-18507453 FORWARD
Evalue: 3e-28 | Bitscore: 121
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 2/162 (1%) |
Tair |
Show Blast
|
| AT5G64990.1 |
| Symbols: AtRABH1a | AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding | chr5:25980788-25982018 REVERSE
Evalue: 3e-28 | Bitscore: 121
Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 1/161 (0%) |
Tair |
Show Blast
|
| AT3G11730.1 |
| Symbols: AtRABD1, ATFP8 | ATFP8 (Arabidopsis Rab GTPase homolog D1); GTP binding | chr3:3709496-3711403 REVERSE
Evalue: 3e-28 | Bitscore: 121
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 3/180 (1%) |
Tair |
Show Blast
|
| AT5G47200.1 |
| Symbols: AtRABD2b, AtRab1A | AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b); GTP binding |
Evalue: 3e-28 | Bitscore: 121
Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 3/173 (1%) |
Tair |
Show Blast
|
| AT4G17530.1 |
| Symbols: ATRAB1C, ATRABD2C, RAB1C | RAB1C; GTP binding | chr4:9773734-9775437 REVERSE
Evalue: 3e-28 | Bitscore: 121
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
