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Ostreococcus tauri


Gene ID
Ot06g01190
Locus
Ot06g01190
Functional Description
unnamed product
Gene Type
protein-coding gene
Contig
chrom06
Last Modified On
09 March 2010 3h11
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
DNA binding

2.
DNA-binding transcription factor activity

3.
sigma factor activity

Biological Process
1.
DNA-templated transcription, initiation

2.
regulation of transcription, DNA-templated

Protein Domains 


Domain IDDescriptionDatabase
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding InterPro
IPR013325 RNA polymerase sigma factor, region 2 InterPro
G3DSA:1.10.601.10 no description Gene3D
IPR007624 RNA polymerase sigma-70 region 3 InterPro
IPR014284 RNA polymerase sigma-70 InterPro
IPR013324 RNA polymerase sigma factor, region 3/4 InterPro
IPR009042 RNA polymerase sigma-70 region 1.2 InterPro
IPR000943 RNA polymerase sigma-70 factor InterPro
IPR007630 RNA polymerase sigma-70 region 4 InterPro
IPR007627 RNA polymerase sigma-70 region 2 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL53378.1 SigA (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 913
Identities = 525/525 (100%), Positives = 525/525 (100%), Gaps = 0/525 (0%)
NCBI
Show Blast
XP_001418397.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-174 | Bitscore: 615
Identities = 294/331 (88%), Positives = 312/331 (94%), Gaps = 0/331 (0%)
NCBI
Show Blast
EEH56303.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-129 | Bitscore: 467
Identities = 231/330 (70%), Positives = 271/330 (82%), Gaps = 9/330 (2%)
NCBI
Show Blast
XP_002501845.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-129 | Bitscore: 467
Identities = 245/369 (66%), Positives = 283/369 (76%), Gaps = 23/369 (6%)
NCBI
Show Blast
ZP_01622514.1 RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Evalue: 3e-105 | Bitscore: 386
Identities = 190/319 (59%), Positives = 244/319 (76%), Gaps = 4/319 (1%)
NCBI
Show Blast
YP_001735256.1 RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Evalue: 5e-105 | Bitscore: 385
Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%)
NCBI
Show Blast
ZP_03152882.1 RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822]
Evalue: 5e-105 | Bitscore: 385
Identities = 197/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%)
NCBI
Show Blast
prf||2208419B RNA polymerase sigma factor
Evalue: 6e-105 | Bitscore: 385
Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%)
NCBI
Show Blast
YP_002377277.1 RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424]
Evalue: 7e-105 | Bitscore: 385
Identities = 196/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%)
NCBI
Show Blast
NP_489303.1 RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
Evalue: 1e-104 | Bitscore: 384
Identities = 193/321 (60%), Positives = 243/321 (75%), Gaps = 8/321 (2%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT06G01190
Redo Blast
CDS Length
1578 nucleotides
CDS Sequence

Protein 

Locus ID
OT06G01190
Redo Blast
Protein Length
526 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a