- Gene ID
- Ot06g01190
- Locus
- Ot06g01190
- Functional Description
- unnamed product
- Gene Type
- protein-coding gene
- Contig
- chrom06
- Last Modified On
- 09 March 2010 3h11
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- unnamed product
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
DNA binding
2.
DNA-binding transcription factor activity
3.
sigma factor activity
- Biological Process
-
1.
DNA-templated transcription, initiation
2.
regulation of transcription, DNA-templated
Protein Domains
Domain ID | Description | Database |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
InterPro |
IPR013325 |
RNA polymerase sigma factor, region 2 |
InterPro |
G3DSA:1.10.601.10 |
no description |
Gene3D |
IPR007624 |
RNA polymerase sigma-70 region 3 |
InterPro |
IPR014284 |
RNA polymerase sigma-70 |
InterPro |
IPR013324 |
RNA polymerase sigma factor, region 3/4 |
InterPro |
IPR009042 |
RNA polymerase sigma-70 region 1.2 |
InterPro |
IPR000943 |
RNA polymerase sigma-70 factor |
InterPro |
IPR007630 |
RNA polymerase sigma-70 region 4 |
InterPro |
IPR007627 |
RNA polymerase sigma-70 region 2 |
InterPro |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
CAL53378.1 |
SigA (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 913 Identities = 525/525 (100%), Positives = 525/525 (100%), Gaps = 0/525 (0%) |
NCBI |
Show Blast
|
XP_001418397.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-174 | Bitscore: 615 Identities = 294/331 (88%), Positives = 312/331 (94%), Gaps = 0/331 (0%) |
NCBI |
Show Blast
|
EEH56303.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-129 | Bitscore: 467 Identities = 231/330 (70%), Positives = 271/330 (82%), Gaps = 9/330 (2%) |
NCBI |
Show Blast
|
XP_002501845.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-129 | Bitscore: 467 Identities = 245/369 (66%), Positives = 283/369 (76%), Gaps = 23/369 (6%) |
NCBI |
Show Blast
|
ZP_01622514.1 |
RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Evalue: 3e-105 | Bitscore: 386 Identities = 190/319 (59%), Positives = 244/319 (76%), Gaps = 4/319 (1%) |
NCBI |
Show Blast
|
YP_001735256.1 |
RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Evalue: 5e-105 | Bitscore: 385 Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%) |
NCBI |
Show Blast
|
ZP_03152882.1 |
RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822]
Evalue: 5e-105 | Bitscore: 385 Identities = 197/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%) |
NCBI |
Show Blast
|
prf||2208419B |
RNA polymerase sigma factor
Evalue: 6e-105 | Bitscore: 385 Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%) |
NCBI |
Show Blast
|
YP_002377277.1 |
RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424]
Evalue: 7e-105 | Bitscore: 385 Identities = 196/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%) |
NCBI |
Show Blast
|
NP_489303.1 |
RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
Evalue: 1e-104 | Bitscore: 384 Identities = 193/321 (60%), Positives = 243/321 (75%), Gaps = 8/321 (2%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
EAI64341.1 |
unknown [environmental sequence]
Evalue: 6e-86 | Bitscore: 318 Identities = 183/315 (58%), Positives = 232/315 (73%), Gaps = 4/315 (1%) |
GOS |
Show Blast
|
EAG00457.1 |
unknown [environmental sequence]
Evalue: 2e-80 | Bitscore: 299 Identities = 165/262 (62%), Positives = 202/262 (77%), Gaps = 2/262 (0%) |
GOS |
Show Blast
|
EAC11536.1 |
unknown [environmental sequence]
Evalue: 3e-78 | Bitscore: 292 Identities = 164/262 (62%), Positives = 202/262 (77%), Gaps = 2/262 (0%) |
GOS |
Show Blast
|
EAK31826.1 |
unknown [environmental sequence]
Evalue: 7e-78 | Bitscore: 291 Identities = 169/284 (59%), Positives = 209/284 (73%), Gaps = 4/284 (1%) |
GOS |
Show Blast
|
EAI87270.1 |
unknown [environmental sequence]
Evalue: 1e-73 | Bitscore: 276 Identities = 157/289 (54%), Positives = 204/289 (70%), Gaps = 5/289 (1%) |
GOS |
Show Blast
|
EAG96339.1 |
unknown [environmental sequence]
Evalue: 1e-70 | Bitscore: 267 Identities = 145/222 (65%), Positives = 175/222 (78%), Gaps = 2/222 (0%) |
GOS |
Show Blast
|
EAG19170.1 |
unknown [environmental sequence]
Evalue: 6e-69 | Bitscore: 261 Identities = 153/290 (52%), Positives = 199/290 (68%), Gaps = 9/290 (3%) |
GOS |
Show Blast
|
EAI98023.1 |
unknown [environmental sequence]
Evalue: 2e-64 | Bitscore: 246 Identities = 123/238 (51%), Positives = 175/238 (73%), Gaps = 1/238 (0%) |
GOS |
Show Blast
|
EAJ49364.1 |
unknown [environmental sequence]
Evalue: 3e-60 | Bitscore: 232 Identities = 126/251 (50%), Positives = 179/251 (71%), Gaps = 1/251 (0%) |
GOS |
Show Blast
|
EAH88244.1 |
unknown [environmental sequence]
Evalue: 6e-60 | Bitscore: 231 Identities = 120/240 (50%), Positives = 179/240 (74%), Gaps = 1/240 (0%) |
GOS |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
CAL53378.1 |
SigA (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 913 Identities = 525/525 (100%), Positives = 525/525 (100%), Gaps = 0/525 (0%) |
NCBI |
Show Blast
|
XP_001418397.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-174 | Bitscore: 615 Identities = 294/331 (88%), Positives = 312/331 (94%), Gaps = 0/331 (0%) |
NCBI |
Show Blast
|
EEH56303.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-129 | Bitscore: 467 Identities = 231/330 (70%), Positives = 271/330 (82%), Gaps = 9/330 (2%) |
NCBI |
Show Blast
|
XP_002501845.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 2e-129 | Bitscore: 467 Identities = 245/369 (66%), Positives = 283/369 (76%), Gaps = 23/369 (6%) |
NCBI |
Show Blast
|
ZP_01622514.1 |
RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Evalue: 3e-105 | Bitscore: 386 Identities = 190/319 (59%), Positives = 244/319 (76%), Gaps = 4/319 (1%) |
NCBI |
Show Blast
|
YP_001735256.1 |
RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Evalue: 5e-105 | Bitscore: 385 Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%) |
NCBI |
Show Blast
|
ZP_03152882.1 |
RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822]
Evalue: 5e-105 | Bitscore: 385 Identities = 197/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%) |
NCBI |
Show Blast
|
prf||2208419B |
RNA polymerase sigma factor
Evalue: 6e-105 | Bitscore: 385 Identities = 204/360 (56%), Positives = 258/360 (71%), Gaps = 15/360 (4%) |
NCBI |
Show Blast
|
YP_002377277.1 |
RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424]
Evalue: 7e-105 | Bitscore: 385 Identities = 196/336 (58%), Positives = 252/336 (75%), Gaps = 8/336 (2%) |
NCBI |
Show Blast
|
NP_489303.1 |
RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
Evalue: 1e-104 | Bitscore: 384 Identities = 193/321 (60%), Positives = 243/321 (75%), Gaps = 8/321 (2%) |
NCBI |
Show Blast
|
No hits found against database O.RCC809 with an e-value better than 1e-3. |
No hits found against database O.luci with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Ot04g03760 |
chrom04.0001 [579643..581100]
Evalue: 2e-25 | Bitscore: 112 Identities = 85/261 (32%), Positives = 138/261 (52%), Gaps = 17/261 (6%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
P26683 |
RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
Evalue: 1e-91 | Bitscore: 337 Identities = 191/318 (60%), Positives = 244/318 (76%), Gaps = 4/318 (1%) |
SwissP |
Show Blast
|
P52322 |
RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
Evalue: 2e-88 | Bitscore: 327 Identities = 192/356 (53%), Positives = 251/356 (70%), Gaps = 40/356 (11%) |
SwissP |
Show Blast
|
P38023 |
RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2
Evalue: 1e-86 | Bitscore: 321 Identities = 190/318 (59%), Positives = 244/318 (76%), Gaps = 4/318 (1%) |
SwissP |
Show Blast
|
P74565 |
RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
Evalue: 2e-83 | Bitscore: 310 Identities = 196/384 (51%), Positives = 255/384 (66%), Gaps = 44/384 (11%) |
SwissP |
Show Blast
|
P0A602 |
RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1
Evalue: 4e-69 | Bitscore: 262 Identities = 152/318 (47%), Positives = 220/318 (69%), Gaps = 16/318 (5%) |
SwissP |
Show Blast
|
P0A603 |
RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1
Evalue: 4e-69 | Bitscore: 262 Identities = 152/318 (47%), Positives = 220/318 (69%), Gaps = 16/318 (5%) |
SwissP |
Show Blast
|
P52328 |
RNA polymerase sigma factor rpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Evalue: 1e-67 | Bitscore: 258 Identities = 155/314 (49%), Positives = 202/314 (64%), Gaps = 43/314 (13%) |
SwissP |
Show Blast
|
Q6GGD8 |
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1
Evalue: 6e-67 | Bitscore: 255 Identities = 150/313 (47%), Positives = 201/313 (64%), Gaps = 43/313 (13%) |
SwissP |
Show Blast
|
P0A0I9 |
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1
Evalue: 6e-67 | Bitscore: 255 Identities = 150/313 (47%), Positives = 201/313 (64%), Gaps = 43/313 (13%) |
SwissP |
Show Blast
|
Q6G905 |
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1
Evalue: 6e-67 | Bitscore: 255 Identities = 150/313 (47%), Positives = 201/313 (64%), Gaps = 43/313 (13%) |
SwissP |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
AT1G08540.1 |
| Symbols: SIGA, SIG2, SIG1, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription
Evalue: 6e-70 | Bitscore: 261 Identities = 141/315 (44%), Positives = 207/315 (65%), Gaps = 3/315 (0%) |
Tair |
Show Blast
|
AT2G36990.1 |
| Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription
Evalue: 9e-57 | Bitscore: 218 Identities = 118/332 (35%), Positives = 207/332 (62%), Gaps = 5/332 (1%) |
Tair |
Show Blast
|
AT3G53920.1 |
| Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription
Evalue: 3e-43 | Bitscore: 173 Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 4/295 (1%) |
Tair |
Show Blast
|
AT1G64860.1 |
| Symbols: SIG1, SIG2, SIGB, RPOD1, SIGA | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcription
Evalue: 3e-40 | Bitscore: 163 Identities = 107/321 (33%), Positives = 178/321 (55%), Gaps = 15/321 (4%) |
Tair |
Show Blast
|
AT5G13730.1 |
| Symbols: SIGD, SIG4 | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor |
Evalue: 2e-39 | Bitscore: 160 Identities = 96/295 (32%), Positives = 169/295 (57%), Gaps = 6/295 (2%) |
Tair |
Show Blast
|
AT5G24120.1 |
| Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/
Evalue: 9e-33 | Bitscore: 138 Identities = 94/304 (30%), Positives = 168/304 (55%), Gaps = 8/304 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|