- Gene ID
- Ot05g03910
- Locus
- Ot05g03910
- Functional Description
- PSI-associated light-harvesting chlorophyll a/b binding protein (IC)
- Gene Type
- protein-coding gene
- Contig
- chrom05
- Last Modified On
- 09 March 2010 2h30
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- PSI-associated light-harvesting chlorophyll a/b binding protein (IC)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
membrane
- Molecular Function
-
n/a
- Biological Process
-
1.
photosynthesis, light harvesting
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF103511 |
Chlorophyll a-b binding protein |
superfamily |
|
PF00504 |
Chloroa_b-bind |
HMMPfam |
|
IPR001344 |
Chlorophyll A-B binding protein |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27547.1 |
chloroplast light-harvesting complex I protein precursor Lhca5 [Ostreococcus tauri]
Evalue: 7e-116 | Bitscore: 419
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%) |
NCBI |
Show Blast
|
| XP_001417828.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-93 | Bitscore: 345
Identities = 162/177 (91%), Positives = 171/177 (96%), Gaps = 0/177 (0%) |
NCBI |
Show Blast
|
| EEH56655.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 8e-74 | Bitscore: 280
Identities = 134/187 (71%), Positives = 154/187 (82%), Gaps = 7/187 (3%) |
NCBI |
Show Blast
|
| XP_002502229.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 8e-72 | Bitscore: 273
Identities = 142/219 (64%), Positives = 167/219 (76%), Gaps = 19/219 (8%) |
NCBI |
Show Blast
|
| tpg|DAA05940.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca9 [Micromonas sp. CCMP490]
Evalue: 1e-67 | Bitscore: 259
Identities = 131/194 (67%), Positives = 153/194 (78%), Gaps = 7/194 (3%) |
NCBI |
Show Blast
|
| tpg|DAA05900.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca9 [Acetabularia acetabulum]
Evalue: 1e-59 | Bitscore: 233
Identities = 112/183 (61%), Positives = 138/183 (75%), Gaps = 6/183 (3%) |
NCBI |
Show Blast
|
| AAD55569.1 |
light harvesting complex a protein [Volvox carteri f. nagariensis]
Evalue: 7e-51 | Bitscore: 204
Identities = 98/176 (55%), Positives = 124/176 (70%), Gaps = 2/176 (1%) |
NCBI |
Show Blast
|
| XP_001692548.1 |
light-harvesting protein of photosystem I [Chlamydomonas reinhardtii]
Evalue: 2e-49 | Bitscore: 199
Identities = 95/175 (54%), Positives = 122/175 (69%), Gaps = 2/175 (1%) |
NCBI |
Show Blast
|
| AAL87738.1 |
chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Evalue: 2e-49 | Bitscore: 199
Identities = 95/175 (54%), Positives = 122/175 (69%), Gaps = 2/175 (1%) |
NCBI |
Show Blast
|
| ABD37884.1 |
light-harvesting chlorophyll-a/b binding protein Lhca5.2 [Mesostigma viride]
Evalue: 2e-44 | Bitscore: 182
Identities = 98/203 (48%), Positives = 130/203 (64%), Gaps = 8/203 (3%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC81111.1 |
unknown [environmental sequence]
Evalue: 3e-17 | Bitscore: 87
Identities = 66/167 (39%), Positives = 84/167 (50%), Gaps = 32/167 (19%) |
GOS |
Show Blast
|
| EAJ62839.1 |
unknown [environmental sequence]
Evalue: 4e-09 | Bitscore: 61
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 31/172 (18%) |
GOS |
Show Blast
|
| EAD38361.1 |
unknown [environmental sequence]
Evalue: 0.0002 | Bitscore: 45
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%) |
GOS |
Show Blast
|
| EAE34011.1 |
unknown [environmental sequence]
Evalue: 0.0004 | Bitscore: 44
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 27/140 (19%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AAY27547.1 |
chloroplast light-harvesting complex I protein precursor Lhca5 [Ostreococcus tauri]
Evalue: 7e-116 | Bitscore: 419
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%) |
NCBI |
Show Blast
|
| XP_001417828.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-93 | Bitscore: 345
Identities = 162/177 (91%), Positives = 171/177 (96%), Gaps = 0/177 (0%) |
NCBI |
Show Blast
|
| EEH56655.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 8e-74 | Bitscore: 280
Identities = 134/187 (71%), Positives = 154/187 (82%), Gaps = 7/187 (3%) |
NCBI |
Show Blast
|
| XP_002502229.1 |
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 8e-72 | Bitscore: 273
Identities = 142/219 (64%), Positives = 167/219 (76%), Gaps = 19/219 (8%) |
NCBI |
Show Blast
|
| tpg|DAA05940.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca9 [Micromonas sp. CCMP490]
Evalue: 1e-67 | Bitscore: 259
Identities = 131/194 (67%), Positives = 153/194 (78%), Gaps = 7/194 (3%) |
NCBI |
Show Blast
|
| tpg|DAA05900.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca9 [Acetabularia acetabulum]
Evalue: 1e-59 | Bitscore: 233
Identities = 112/183 (61%), Positives = 138/183 (75%), Gaps = 6/183 (3%) |
NCBI |
Show Blast
|
| AAD55569.1 |
light harvesting complex a protein [Volvox carteri f. nagariensis]
Evalue: 7e-51 | Bitscore: 204
Identities = 98/176 (55%), Positives = 124/176 (70%), Gaps = 2/176 (1%) |
NCBI |
Show Blast
|
| XP_001692548.1 |
light-harvesting protein of photosystem I [Chlamydomonas reinhardtii]
Evalue: 2e-49 | Bitscore: 199
Identities = 95/175 (54%), Positives = 122/175 (69%), Gaps = 2/175 (1%) |
NCBI |
Show Blast
|
| AAL87738.1 |
chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Evalue: 2e-49 | Bitscore: 199
Identities = 95/175 (54%), Positives = 122/175 (69%), Gaps = 2/175 (1%) |
NCBI |
Show Blast
|
| ABD37884.1 |
light-harvesting chlorophyll-a/b binding protein Lhca5.2 [Mesostigma viride]
Evalue: 2e-44 | Bitscore: 182
Identities = 98/203 (48%), Positives = 130/203 (64%), Gaps = 8/203 (3%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot03g04770 |
chrom03.0001 [783250..783821,783973..784042]
Evalue: 3e-37 | Bitscore: 149
Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 3/154 (1%) |
Self |
Show Blast
|
| Ot09g04370 |
chrom09.0001 [665721..666449]
Evalue: 6e-29 | Bitscore: 122
Identities = 87/224 (38%), Positives = 116/224 (51%), Gaps = 31/224 (13%) |
Self |
Show Blast
|
| Ot02g05720 |
chrom02.0001 [683813..683847,684073..684778] inframe stop codon incomplete
Evalue: 2e-27 | Bitscore: 116
Identities = 81/213 (38%), Positives = 105/213 (49%), Gaps = 28/213 (13%) |
Self |
Show Blast
|
| Ot18g01370 |
chrom18.0001 [211282..211392,211687..212394]
Evalue: 1e-24 | Bitscore: 107
Identities = 83/210 (39%), Positives = 106/210 (50%), Gaps = 43/210 (20%) |
Self |
Show Blast
|
| Ot14g01370 |
chrom14.0001 [192073..192355,192840..193507]
Evalue: 8e-24 | Bitscore: 105
Identities = 76/194 (39%), Positives = 99/194 (51%), Gaps = 29/194 (14%) |
Self |
Show Blast
|
| Ot11g01060 |
chrom11.0001 [188762..189850]
Evalue: 5e-20 | Bitscore: 92
Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 42/200 (21%) |
Self |
Show Blast
|
| Ot02g07190 |
chrom02.0001 [968674..969111] inframe stop codon incomplete
Evalue: 3e-11 | Bitscore: 63
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 17/145 (11%) |
Self |
Show Blast
|
| Ot01g04850 |
chrom01.0001 [789392..790024,790190..790270,790350..790530,
Evalue: 1e-10 | Bitscore: 61
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 31/167 (18%) |
Self |
Show Blast
|
| Ot05g01790 |
chrom05.0001 [265123..265982,266047..266056]
Evalue: 1e-07 | Bitscore: 51
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 22/153 (14%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P27521 |
Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
Evalue: 3e-26 | Bitscore: 118
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 21/181 (11%) |
SwissP |
Show Blast
|
| P10708 |
Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
Evalue: 4e-25 | Bitscore: 114
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 29/195 (14%) |
SwissP |
Show Blast
|
| P13869 |
Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
Evalue: 4e-25 | Bitscore: 114
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 29/195 (14%) |
SwissP |
Show Blast
|
| P22686 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1
Evalue: 5e-25 | Bitscore: 114
Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 39/233 (16%) |
SwissP |
Show Blast
|
| Q9SQL2 |
Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
Evalue: 7e-25 | Bitscore: 113
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 21/181 (11%) |
SwissP |
Show Blast
|
| P27522 |
Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
Evalue: 1e-23 | Bitscore: 109
Identities = 76/248 (30%), Positives = 130/248 (52%), Gaps = 53/248 (21%) |
SwissP |
Show Blast
|
| Q9XF89 |
Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1
Evalue: 3e-23 | Bitscore: 108
Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 23/190 (12%) |
SwissP |
Show Blast
|
| P14273 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1
Evalue: 2e-22 | Bitscore: 105
Identities = 69/186 (37%), Positives = 97/186 (52%), Gaps = 29/186 (15%) |
SwissP |
Show Blast
|
| P27517 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1
Evalue: 2e-22 | Bitscore: 105
Identities = 72/191 (37%), Positives = 99/191 (51%), Gaps = 36/191 (18%) |
SwissP |
Show Blast
|
| Q32904 |
Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1
Evalue: 2e-22 | Bitscore: 105
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 52/239 (21%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G45474.2 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 4e-33 | Bitscore: 137
Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 32/223 (14%) |
Tair |
Show Blast
|
| AT1G45474.1 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 4e-33 | Bitscore: 137
Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 32/223 (14%) |
Tair |
Show Blast
|
| AT1G19150.1 |
| Symbols: LHCA2*1, LHCA6 | LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding |
Evalue: 2e-29 | Bitscore: 125
Identities = 77/200 (38%), Positives = 111/200 (55%), Gaps = 29/200 (14%) |
Tair |
Show Blast
|
| AT3G47470.1 |
| Symbols: CAB4, LHCA4 | LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding |
Evalue: 3e-27 | Bitscore: 118
Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 21/181 (11%) |
Tair |
Show Blast
|
| AT3G61470.1 |
| Symbols: LHCA2 | LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding | chr3:22756711-22758007
Evalue: 3e-26 | Bitscore: 114
Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 31/213 (14%) |
Tair |
Show Blast
|
| AT4G10340.1 |
| Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408196-6409492
Evalue: 3e-24 | Bitscore: 108
Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 23/190 (12%) |
Tair |
Show Blast
|
| AT1G61520.1 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding | chr1:22703817-22704814
Evalue: 9e-24 | Bitscore: 106
Identities = 76/246 (30%), Positives = 127/246 (51%), Gaps = 53/246 (21%) |
Tair |
Show Blast
|
| AT3G54890.1 |
| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20350684-20351900 REVERSE
Evalue: 2e-23 | Bitscore: 105
Identities = 76/195 (38%), Positives = 110/195 (56%), Gaps = 29/195 (14%) |
Tair |
Show Blast
|
| AT5G54270.1 |
| Symbols: LHCB3*1, LHCB3 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) | chr5:22055650-22056609 FORWARD
Evalue: 2e-22 | Bitscore: 102
Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 31/192 (16%) |
Tair |
Show Blast
|
| AT1G61520.2 |
| Symbols: LHCA3 | LHCA3 (Photosystem I light harvesting complex gene 3) | chr1:22704158-22704814 FORWARD
Evalue: 1e-20 | Bitscore: 96
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 42/203 (20%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
