- Gene ID
- Ot05g02390
- Locus
- Ot05g02390
- Functional Description
- putative ras-related protein [Oryza sativa (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom05
- Last Modified On
- 29 August 2011 16h29
- History
-
Annotator
- Name
- Bram Verhelst
- Email
- brhel@psb.vib-ugent.be
- Lab
- Bioinformatics and Systems Biology
- Status
- inactive
Gene Actions
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative ras-related protein [Oryza sativa (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
GTP binding
- Biological Process
-
1.
small GTPase mediated signal transduction
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53994.1 |
putative ras-related protein (ISS) [Ostreococcus tauri]
Evalue: 1e-22 | Bitscore: 108
Identities = 54/54 (100%), Positives = 54/54 (100%), Gaps = 0/54 (0%) |
NCBI |
Show Blast
|
| CAL53993.1 |
Rab-type small GTP-binding protein-like (ISS) [Ostreococcus tauri]
Evalue: 1e-11 | Bitscore: 72
Identities = 39/52 (75%), Positives = 39/52 (75%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_001417998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-11 | Bitscore: 72
Identities = 39/52 (75%), Positives = 39/52 (75%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_002502151.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 6e-10 | Bitscore: 67
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| EEH59022.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-10 | Bitscore: 66
Identities = 36/52 (69%), Positives = 37/52 (71%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| ACN39763.1 |
unknown [Picea sitchensis]
Evalue: 1e-09 | Bitscore: 66
Identities = 35/51 (68%), Positives = 37/51 (72%), Gaps = 13/51 (25%) |
NCBI |
Show Blast
|
| CAN64837.1 |
hypothetical protein [Vitis vinifera]
Evalue: 1e-09 | Bitscore: 66
Identities = 37/59 (62%), Positives = 42/59 (71%), Gaps = 8/59 (13%) |
NCBI |
Show Blast
|
| XP_001769337.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 66
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_001766080.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 65
Identities = 35/51 (68%), Positives = 37/51 (72%), Gaps = 13/51 (25%) |
NCBI |
Show Blast
|
| XP_001777287.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 65
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 3e-05 | Bitscore: 47
Identities = 19/29 (65%), Positives = 25/29 (86%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53994.1 |
putative ras-related protein (ISS) [Ostreococcus tauri]
Evalue: 1e-22 | Bitscore: 108
Identities = 54/54 (100%), Positives = 54/54 (100%), Gaps = 0/54 (0%) |
NCBI |
Show Blast
|
| CAL53993.1 |
Rab-type small GTP-binding protein-like (ISS) [Ostreococcus tauri]
Evalue: 1e-11 | Bitscore: 72
Identities = 39/52 (75%), Positives = 39/52 (75%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_001417998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-11 | Bitscore: 72
Identities = 39/52 (75%), Positives = 39/52 (75%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_002502151.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 6e-10 | Bitscore: 67
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| EEH59022.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 7e-10 | Bitscore: 66
Identities = 36/52 (69%), Positives = 37/52 (71%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| ACN39763.1 |
unknown [Picea sitchensis]
Evalue: 1e-09 | Bitscore: 66
Identities = 35/51 (68%), Positives = 37/51 (72%), Gaps = 13/51 (25%) |
NCBI |
Show Blast
|
| CAN64837.1 |
hypothetical protein [Vitis vinifera]
Evalue: 1e-09 | Bitscore: 66
Identities = 37/59 (62%), Positives = 42/59 (71%), Gaps = 8/59 (13%) |
NCBI |
Show Blast
|
| XP_001769337.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 66
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| XP_001766080.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 65
Identities = 35/51 (68%), Positives = 37/51 (72%), Gaps = 13/51 (25%) |
NCBI |
Show Blast
|
| XP_001777287.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 1e-09 | Bitscore: 65
Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 13/52 (25%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 7e-09 | Bitscore: 53
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 10/59 (16%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 5e-05 | Bitscore: 40
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%) |
Self |
Show Blast
|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 0.0004 | Bitscore: 37
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 13/42 (30%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P20790 |
Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1
Evalue: 3e-10 | Bitscore: 63
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| Q39433 |
Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Evalue: 8e-10 | Bitscore: 62
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P36861 |
GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Evalue: 1e-09 | Bitscore: 62
Identities = 32/51 (62%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P17609 |
GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1
Evalue: 2e-09 | Bitscore: 61
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P28186 |
Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1
Evalue: 2e-09 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P41924 |
Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1
Evalue: 2e-09 | Bitscore: 60
Identities = 33/51 (64%), Positives = 35/51 (68%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| Q01890 |
Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1
Evalue: 4e-09 | Bitscore: 59
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| Q39571 |
GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1
Evalue: 4e-09 | Bitscore: 59
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P31584 |
GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Evalue: 5e-09 | Bitscore: 59
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| P34140 |
Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2
Evalue: 1e-08 | Bitscore: 58
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 13/51 (25%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G59840.1 |
| Symbols: | Ras-related GTP-binding family protein | chr5:24124676-24126275 REVERSE
Evalue: 9e-11 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G53610.1 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 9e-11 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G53610.2 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 9e-11 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G53610.3 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8 | chr3:19887509-19889242 REVERSE
Evalue: 9e-11 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G46060.3 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 1e-10 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G46060.2 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 1e-10 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT3G46060.1 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3; GTP binding | chr3:16928893-16930725 FORWARD
Evalue: 1e-10 | Bitscore: 61
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT1G02130.1 |
| Symbols: AtRab1B, Ara-5, AtRABD2a, ARA5, ATRAB1B | ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B);
Evalue: 5e-10 | Bitscore: 59
Identities = 30/51 (58%), Positives = 34/51 (66%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT5G47200.1 |
| Symbols: AtRABD2b, AtRab1A | AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b); GTP binding |
Evalue: 2e-09 | Bitscore: 57
Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
| AT4G17530.1 |
| Symbols: ATRAB1C, ATRABD2C, RAB1C | RAB1C; GTP binding | chr4:9773734-9775437 REVERSE
Evalue: 3e-09 | Bitscore: 57
Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 13/51 (25%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
