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Ostreococcus tauri


Gene ID
Ot05g02380
Locus
Ot05g02380
Functional Description
Rab-type small GTP-binding protein-like (ISS)
Gene Type
protein-coding gene
Contig
chrom05
Last Modified On
09 March 2010 2h07
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Rab-type small GTP-binding protein-like (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
intracellular anatomical structure

Molecular Function
1.
DNA binding

2.
ATP binding

3.
transcription factor binding

Biological Process
1.
phosphorelay signal transduction system

2.
regulation of transcription, DNA-templated

Protein Domains 


Domain IDDescriptionDatabase
IPR013753 Ras InterPro
G3DSA:3.40.50.300 no description Gene3D
IPR001806 Ras GTPase InterPro
IPR005225 Small GTP-binding protein InterPro
IPR003579 Ras small GTPase, Rab type InterPro
IPR020851 Small GTPase InterPro
SSF52540 P-loop containing nucleoside triphosphate hydrolases superfamily
PTHR11708 RAS-RELATED GTPASE HMMPanther
IPR002078 RNA polymerase sigma factor 54, interaction InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL53993.1 Rab-type small GTP-binding protein-like (ISS) [Ostreococcus tauri]
Evalue: 5e-112 | Bitscore: 407
Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%)
NCBI
Show Blast
XP_001417998.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-94 | Bitscore: 347
Identities = 172/203 (84%), Positives = 184/203 (90%), Gaps = 6/203 (2%)
NCBI
Show Blast
EEH59022.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-81 | Bitscore: 305
Identities = 149/175 (85%), Positives = 158/175 (90%), Gaps = 1/175 (0%)
NCBI
Show Blast
ACN39763.1 unknown [Picea sitchensis]
Evalue: 1e-79 | Bitscore: 299
Identities = 146/203 (71%), Positives = 163/203 (80%), Gaps = 7/203 (3%)
NCBI
Show Blast
BAB84323.1 ras-related protein RAB8-2 [Nicotiana tabacum]
Evalue: 1e-78 | Bitscore: 296
Identities = 143/203 (70%), Positives = 167/203 (82%), Gaps = 7/203 (3%)
NCBI
Show Blast
XP_001766892.1 Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-78 | Bitscore: 295
Identities = 148/204 (72%), Positives = 166/204 (81%), Gaps = 8/204 (3%)
NCBI
Show Blast
NP_200792.1 Ras-related GTP-binding family protein [Arabidopsis thaliana]
Evalue: 3e-78 | Bitscore: 295
Identities = 141/203 (69%), Positives = 167/203 (82%), Gaps = 7/203 (3%)
NCBI
Show Blast
XP_001766081.1 Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 5e-78 | Bitscore: 294
Identities = 142/183 (77%), Positives = 158/183 (86%), Gaps = 2/183 (1%)
NCBI
Show Blast
NP_190929.1 ATRAB8; GTP binding [Arabidopsis thaliana]
Evalue: 6e-78 | Bitscore: 293
Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%)
NCBI
Show Blast
BAB84324.1 ras-related protein RAB8-3 [Nicotiana tabacum]
Evalue: 1e-77 | Bitscore: 293
Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 7/203 (3%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT05G02380
Redo Blast
CDS Length
642 nucleotides
CDS Sequence

Protein 

Locus ID
OT05G02380
Redo Blast
Protein Length
183 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a