- Gene ID
- Ot05g02380
- Locus
- Ot05g02380
- Functional Description
- Rab-type small GTP-binding protein-like (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom05
- Last Modified On
- 09 March 2010 2h07
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Rab-type small GTP-binding protein-like (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
CAL53993.1 |
Rab-type small GTP-binding protein-like (ISS) [Ostreococcus tauri]
Evalue: 5e-112 | Bitscore: 407 Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%) |
NCBI |
Show Blast
|
XP_001417998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-94 | Bitscore: 347 Identities = 172/203 (84%), Positives = 184/203 (90%), Gaps = 6/203 (2%) |
NCBI |
Show Blast
|
EEH59022.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-81 | Bitscore: 305 Identities = 149/175 (85%), Positives = 158/175 (90%), Gaps = 1/175 (0%) |
NCBI |
Show Blast
|
ACN39763.1 |
unknown [Picea sitchensis]
Evalue: 1e-79 | Bitscore: 299 Identities = 146/203 (71%), Positives = 163/203 (80%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
BAB84323.1 |
ras-related protein RAB8-2 [Nicotiana tabacum]
Evalue: 1e-78 | Bitscore: 296 Identities = 143/203 (70%), Positives = 167/203 (82%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
XP_001766892.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-78 | Bitscore: 295 Identities = 148/204 (72%), Positives = 166/204 (81%), Gaps = 8/204 (3%) |
NCBI |
Show Blast
|
NP_200792.1 |
Ras-related GTP-binding family protein [Arabidopsis thaliana]
Evalue: 3e-78 | Bitscore: 295 Identities = 141/203 (69%), Positives = 167/203 (82%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
XP_001766081.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 5e-78 | Bitscore: 294 Identities = 142/183 (77%), Positives = 158/183 (86%), Gaps = 2/183 (1%) |
NCBI |
Show Blast
|
NP_190929.1 |
ATRAB8; GTP binding [Arabidopsis thaliana]
Evalue: 6e-78 | Bitscore: 293 Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
BAB84324.1 |
ras-related protein RAB8-3 [Nicotiana tabacum]
Evalue: 1e-77 | Bitscore: 293 Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
EAC93829.1 |
unknown [environmental sequence]
Evalue: 4e-60 | Bitscore: 230 Identities = 112/192 (58%), Positives = 148/192 (77%), Gaps = 5/192 (2%) |
GOS |
Show Blast
|
EAK24025.1 |
unknown [environmental sequence]
Evalue: 3e-36 | Bitscore: 151 Identities = 85/196 (43%), Positives = 122/196 (62%), Gaps = 13/196 (6%) |
GOS |
Show Blast
|
EAB57280.1 |
unknown [environmental sequence]
Evalue: 7e-32 | Bitscore: 136 Identities = 67/153 (43%), Positives = 93/153 (60%), Gaps = 3/153 (1%) |
GOS |
Show Blast
|
EAJ10721.1 |
unknown [environmental sequence]
Evalue: 2e-31 | Bitscore: 134 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 4/183 (2%) |
GOS |
Show Blast
|
EAC60855.1 |
unknown [environmental sequence]
Evalue: 7e-30 | Bitscore: 129 Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 2/160 (1%) |
GOS |
Show Blast
|
EAK45458.1 |
unknown [environmental sequence]
Evalue: 9e-27 | Bitscore: 119 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%) |
GOS |
Show Blast
|
EAD71502.1 |
unknown [environmental sequence]
Evalue: 2e-26 | Bitscore: 118 Identities = 66/161 (40%), Positives = 93/161 (57%), Gaps = 12/161 (7%) |
GOS |
Show Blast
|
EAC00141.1 |
unknown [environmental sequence]
Evalue: 2e-25 | Bitscore: 115 Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 13/202 (6%) |
GOS |
Show Blast
|
EAD18748.1 |
unknown [environmental sequence]
Evalue: 4e-25 | Bitscore: 114 Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 6/138 (4%) |
GOS |
Show Blast
|
EAK39351.1 |
unknown [environmental sequence]
Evalue: 4e-24 | Bitscore: 110 Identities = 58/167 (34%), Positives = 99/167 (59%), Gaps = 5/167 (2%) |
GOS |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
CAL53993.1 |
Rab-type small GTP-binding protein-like (ISS) [Ostreococcus tauri]
Evalue: 5e-112 | Bitscore: 407 Identities = 197/197 (100%), Positives = 197/197 (100%), Gaps = 0/197 (0%) |
NCBI |
Show Blast
|
XP_001417998.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-94 | Bitscore: 347 Identities = 172/203 (84%), Positives = 184/203 (90%), Gaps = 6/203 (2%) |
NCBI |
Show Blast
|
EEH59022.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-81 | Bitscore: 305 Identities = 149/175 (85%), Positives = 158/175 (90%), Gaps = 1/175 (0%) |
NCBI |
Show Blast
|
ACN39763.1 |
unknown [Picea sitchensis]
Evalue: 1e-79 | Bitscore: 299 Identities = 146/203 (71%), Positives = 163/203 (80%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
BAB84323.1 |
ras-related protein RAB8-2 [Nicotiana tabacum]
Evalue: 1e-78 | Bitscore: 296 Identities = 143/203 (70%), Positives = 167/203 (82%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
XP_001766892.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 2e-78 | Bitscore: 295 Identities = 148/204 (72%), Positives = 166/204 (81%), Gaps = 8/204 (3%) |
NCBI |
Show Blast
|
NP_200792.1 |
Ras-related GTP-binding family protein [Arabidopsis thaliana]
Evalue: 3e-78 | Bitscore: 295 Identities = 141/203 (69%), Positives = 167/203 (82%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
XP_001766081.1 |
Rab8/RabE-family small GTPase [Physcomitrella patens subsp. patens]
Evalue: 5e-78 | Bitscore: 294 Identities = 142/183 (77%), Positives = 158/183 (86%), Gaps = 2/183 (1%) |
NCBI |
Show Blast
|
NP_190929.1 |
ATRAB8; GTP binding [Arabidopsis thaliana]
Evalue: 6e-78 | Bitscore: 293 Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
BAB84324.1 |
ras-related protein RAB8-3 [Nicotiana tabacum]
Evalue: 1e-77 | Bitscore: 293 Identities = 141/203 (69%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
NCBI |
Show Blast
|
No hits found against database O.RCC809 with an e-value better than 1e-3. |
No hits found against database O.luci with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 6e-62 | Bitscore: 231 Identities = 119/219 (54%), Positives = 155/219 (70%), Gaps = 24/219 (10%) |
Self |
Show Blast
|
Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 5e-41 | Bitscore: 162 Identities = 79/161 (49%), Positives = 114/161 (70%), Gaps = 4/161 (2%) |
Self |
Show Blast
|
Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 1e-35 | Bitscore: 144 Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 50/245 (20%) |
Self |
Show Blast
|
Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 2e-32 | Bitscore: 134 Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 6/195 (3%) |
Self |
Show Blast
|
Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 1e-25 | Bitscore: 110 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 2/161 (1%) |
Self |
Show Blast
|
Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 8e-25 | Bitscore: 108 Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 10/183 (5%) |
Self |
Show Blast
|
Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 2e-19 | Bitscore: 90 Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 23/186 (12%) |
Self |
Show Blast
|
Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 5e-15 | Bitscore: 75 Identities = 47/182 (25%), Positives = 92/182 (50%), Gaps = 9/182 (4%) |
Self |
Show Blast
|
Ot05g02390 |
chrom05.0001 [355908..356029,356110..356200]
Evalue: 5e-14 | Bitscore: 72 Identities = 39/52 (75%), Positives = 39/52 (75%), Gaps = 13/52 (25%) |
Self |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
P28186 |
Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1
Evalue: 3e-75 | Bitscore: 280 Identities = 139/203 (68%), Positives = 164/203 (80%), Gaps = 7/203 (3%) |
SwissP |
Show Blast
|
Q39433 |
Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Evalue: 2e-74 | Bitscore: 278 Identities = 141/202 (69%), Positives = 162/202 (80%), Gaps = 7/202 (3%) |
SwissP |
Show Blast
|
P20790 |
Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1
Evalue: 6e-73 | Bitscore: 273 Identities = 136/203 (66%), Positives = 165/203 (81%), Gaps = 14/203 (6%) |
SwissP |
Show Blast
|
P36861 |
GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Evalue: 4e-72 | Bitscore: 270 Identities = 134/207 (64%), Positives = 158/207 (76%), Gaps = 11/207 (5%) |
SwissP |
Show Blast
|
P20791 |
Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1
Evalue: 2e-70 | Bitscore: 265 Identities = 128/170 (75%), Positives = 151/170 (88%), Gaps = 1/170 (0%) |
SwissP |
Show Blast
|
P17609 |
GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1
Evalue: 9e-70 | Bitscore: 263 Identities = 133/198 (67%), Positives = 161/198 (81%), Gaps = 5/198 (2%) |
SwissP |
Show Blast
|
P40392 |
Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2
Evalue: 1e-68 | Bitscore: 258 Identities = 121/198 (61%), Positives = 156/198 (78%), Gaps = 3/198 (1%) |
SwissP |
Show Blast
|
P61007 |
Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Evalue: 2e-66 | Bitscore: 251 Identities = 119/185 (64%), Positives = 155/185 (83%), Gaps = 1/185 (0%) |
SwissP |
Show Blast
|
P61006 |
Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Evalue: 2e-66 | Bitscore: 251 Identities = 119/185 (64%), Positives = 155/185 (83%), Gaps = 1/185 (0%) |
SwissP |
Show Blast
|
Q4R5P1 |
Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1
Evalue: 2e-66 | Bitscore: 251 Identities = 119/185 (64%), Positives = 155/185 (83%), Gaps = 1/185 (0%) |
SwissP |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
AT5G59840.1 |
| Symbols: | Ras-related GTP-binding family protein | chr5:24124676-24126275 REVERSE
Evalue: 6e-77 | Bitscore: 283 Identities = 140/203 (68%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G53610.1 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 1e-76 | Bitscore: 282 Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G53610.2 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8; GTP binding | chr3:19887509-19889242 REVERSE
Evalue: 1e-76 | Bitscore: 282 Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G53610.3 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8 | chr3:19887509-19889242 REVERSE
Evalue: 1e-76 | Bitscore: 282 Identities = 138/203 (67%), Positives = 165/203 (81%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G46060.3 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 3e-76 | Bitscore: 280 Identities = 139/203 (68%), Positives = 164/203 (80%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G46060.2 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3 | chr3:16928893-16930725 FORWARD
Evalue: 3e-76 | Bitscore: 280 Identities = 139/203 (68%), Positives = 164/203 (80%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT3G46060.1 |
| Symbols: Ara-3, AtRABE1c, AtRab8A, ARA3 | ARA3; GTP binding | chr3:16928893-16930725 FORWARD
Evalue: 3e-76 | Bitscore: 280 Identities = 139/203 (68%), Positives = 164/203 (80%), Gaps = 7/203 (3%) |
Tair |
Show Blast
|
AT5G03520.1 |
| Symbols: AtRab8C, AtRABE1d | AtRABE1d/AtRab8C; GTP binding | chr5:883678-885157 FORWARD
Evalue: 1e-72 | Bitscore: 268 Identities = 144/202 (71%), Positives = 168/202 (83%), Gaps = 6/202 (2%) |
Tair |
Show Blast
|
AT3G09900.1 |
| Symbols: AtRABE1e, AtRab8E | AtRABE1e/AtRab8E (Arabidopsis Rab GTPase homolog E1e); GTP binding | chr3:3034692-3036384
Evalue: 5e-71 | Bitscore: 263 Identities = 140/194 (72%), Positives = 161/194 (82%) |
Tair |
Show Blast
|
AT4G17530.1 |
| Symbols: ATRAB1C, ATRABD2C, RAB1C | RAB1C; GTP binding | chr4:9773734-9775437 REVERSE
Evalue: 9e-64 | Bitscore: 239 Identities = 112/197 (56%), Positives = 147/197 (74%), Gaps = 2/197 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|