- Gene ID
- Ot05g01980
- Locus
- Ot05g01980
- Functional Description
- putative GTP-binding protein RAB1Y (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom05
- Last Modified On
- 09 March 2010 2h01
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative GTP-binding protein RAB1Y (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53953.1 |
putative GTP-binding protein RAB1Y (ISS) [Ostreococcus tauri]
Evalue: 2e-113 | Bitscore: 412
Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%) |
NCBI |
Show Blast
|
| XP_001417734.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-88 | Bitscore: 327
Identities = 166/205 (80%), Positives = 179/205 (87%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 5e-80 | Bitscore: 296
Identities = 152/190 (80%), Positives = 166/190 (87%) |
GOS |
Show Blast
|
| EEH59083.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-69 | Bitscore: 264
Identities = 129/198 (65%), Positives = 155/198 (78%), Gaps = 1/198 (0%) |
NCBI |
Show Blast
|
| XP_002502096.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 6e-69 | Bitscore: 263
Identities = 131/205 (63%), Positives = 162/205 (79%), Gaps = 6/205 (2%) |
NCBI |
Show Blast
|
| NP_001149268.1 |
ras-related protein Rab-18 [Zea mays]
Evalue: 5e-67 | Bitscore: 257
Identities = 119/203 (58%), Positives = 157/203 (77%), Gaps = 3/203 (1%) |
NCBI |
Show Blast
|
| XP_002448841.1 |
hypothetical protein SORBIDRAFT_06g034200 [Sorghum bicolor]
Evalue: 2e-66 | Bitscore: 255
Identities = 117/203 (57%), Positives = 156/203 (76%), Gaps = 3/203 (1%) |
NCBI |
Show Blast
|
| ABK21996.1 |
unknown [Picea sitchensis]
Evalue: 3e-66 | Bitscore: 254
Identities = 117/204 (57%), Positives = 155/204 (75%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| CBI19935.1 |
unnamed protein product [Vitis vinifera]
Evalue: 4e-65 | Bitscore: 251
Identities = 115/206 (55%), Positives = 158/206 (76%), Gaps = 3/206 (1%) |
NCBI |
Show Blast
|
| ACJ86021.1 |
unknown [Medicago truncatula]
Evalue: 5e-65 | Bitscore: 250
Identities = 116/205 (56%), Positives = 154/205 (75%), Gaps = 2/205 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 5e-80 | Bitscore: 296
Identities = 152/190 (80%), Positives = 166/190 (87%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 6e-36 | Bitscore: 149
Identities = 76/152 (50%), Positives = 105/152 (69%), Gaps = 3/152 (1%) |
GOS |
Show Blast
|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 2e-28 | Bitscore: 125
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 1e-25 | Bitscore: 115
Identities = 70/184 (38%), Positives = 107/184 (58%), Gaps = 4/184 (2%) |
GOS |
Show Blast
|
| EAD18748.1 |
unknown [environmental sequence]
Evalue: 7e-23 | Bitscore: 106
Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 6/138 (4%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 1e-22 | Bitscore: 105
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 7/156 (4%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 1e-21 | Bitscore: 102
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 4/163 (2%) |
GOS |
Show Blast
|
| EAK39351.1 |
unknown [environmental sequence]
Evalue: 2e-20 | Bitscore: 98
Identities = 52/168 (30%), Positives = 97/168 (57%), Gaps = 3/168 (1%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 7e-20 | Bitscore: 96
Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 10/201 (4%) |
GOS |
Show Blast
|
| EAC00141.1 |
unknown [environmental sequence]
Evalue: 2e-19 | Bitscore: 95
Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 8/166 (4%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53953.1 |
putative GTP-binding protein RAB1Y (ISS) [Ostreococcus tauri]
Evalue: 2e-113 | Bitscore: 412
Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%) |
NCBI |
Show Blast
|
| XP_001417734.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-88 | Bitscore: 327
Identities = 166/205 (80%), Positives = 179/205 (87%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| EEH59083.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-69 | Bitscore: 264
Identities = 129/198 (65%), Positives = 155/198 (78%), Gaps = 1/198 (0%) |
NCBI |
Show Blast
|
| XP_002502096.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 6e-69 | Bitscore: 263
Identities = 131/205 (63%), Positives = 162/205 (79%), Gaps = 6/205 (2%) |
NCBI |
Show Blast
|
| NP_001149268.1 |
ras-related protein Rab-18 [Zea mays]
Evalue: 5e-67 | Bitscore: 257
Identities = 119/203 (58%), Positives = 157/203 (77%), Gaps = 3/203 (1%) |
NCBI |
Show Blast
|
| XP_002448841.1 |
hypothetical protein SORBIDRAFT_06g034200 [Sorghum bicolor]
Evalue: 2e-66 | Bitscore: 255
Identities = 117/203 (57%), Positives = 156/203 (76%), Gaps = 3/203 (1%) |
NCBI |
Show Blast
|
| ABK21996.1 |
unknown [Picea sitchensis]
Evalue: 3e-66 | Bitscore: 254
Identities = 117/204 (57%), Positives = 155/204 (75%), Gaps = 1/204 (0%) |
NCBI |
Show Blast
|
| CBI19935.1 |
unnamed protein product [Vitis vinifera]
Evalue: 4e-65 | Bitscore: 251
Identities = 115/206 (55%), Positives = 158/206 (76%), Gaps = 3/206 (1%) |
NCBI |
Show Blast
|
| ACJ86021.1 |
unknown [Medicago truncatula]
Evalue: 5e-65 | Bitscore: 250
Identities = 116/205 (56%), Positives = 154/205 (75%), Gaps = 2/205 (0%) |
NCBI |
Show Blast
|
| XP_002267426.1 |
PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
Evalue: 6e-65 | Bitscore: 250
Identities = 115/206 (55%), Positives = 158/206 (76%), Gaps = 3/206 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 9e-38 | Bitscore: 151
Identities = 77/152 (50%), Positives = 105/152 (69%), Gaps = 3/152 (1%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 8e-28 | Bitscore: 118
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 3/165 (1%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 3e-27 | Bitscore: 116
Identities = 58/123 (47%), Positives = 87/123 (70%), Gaps = 3/123 (2%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 5e-23 | Bitscore: 102
Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 35/219 (15%) |
Self |
Show Blast
|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 9e-23 | Bitscore: 101
Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 6/166 (3%) |
Self |
Show Blast
|
| Ot04g01900 |
chrom04.0001 [273503..274057]
Evalue: 1e-22 | Bitscore: 100
Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 23/192 (11%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 2e-16 | Bitscore: 80
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 31/202 (15%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 8e-14 | Bitscore: 71
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 23/209 (11%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 4e-12 | Bitscore: 65
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P36862 |
GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1
Evalue: 5e-55 | Bitscore: 213
Identities = 109/198 (55%), Positives = 145/198 (73%), Gaps = 3/198 (1%) |
SwissP |
Show Blast
|
| Q6DHC1 |
Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Evalue: 3e-48 | Bitscore: 191
Identities = 98/169 (57%), Positives = 129/169 (76%), Gaps = 3/169 (1%) |
SwissP |
Show Blast
|
| P90726 |
Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1
Evalue: 2e-47 | Bitscore: 188
Identities = 101/205 (49%), Positives = 140/205 (68%), Gaps = 6/205 (2%) |
SwissP |
Show Blast
|
| Q8MXS1 |
Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1
Evalue: 2e-47 | Bitscore: 188
Identities = 97/180 (53%), Positives = 132/180 (73%), Gaps = 3/180 (1%) |
SwissP |
Show Blast
|
| Q5EB77 |
Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1
Evalue: 4e-47 | Bitscore: 187
Identities = 101/194 (52%), Positives = 136/194 (70%), Gaps = 4/194 (2%) |
SwissP |
Show Blast
|
| P35293 |
Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2
Evalue: 5e-47 | Bitscore: 187
Identities = 101/194 (52%), Positives = 136/194 (70%), Gaps = 4/194 (2%) |
SwissP |
Show Blast
|
| Q54GY8 |
Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1
Evalue: 4e-46 | Bitscore: 184
Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 3/170 (1%) |
SwissP |
Show Blast
|
| Q5ZLG1 |
Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1
Evalue: 8e-46 | Bitscore: 183
Identities = 95/169 (56%), Positives = 128/169 (75%), Gaps = 3/169 (1%) |
SwissP |
Show Blast
|
| Q0IIG8 |
Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1
Evalue: 1e-45 | Bitscore: 182
Identities = 95/177 (53%), Positives = 129/177 (72%), Gaps = 3/177 (1%) |
SwissP |
Show Blast
|
| Q5R5H5 |
Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1
Evalue: 1e-45 | Bitscore: 182
Identities = 95/177 (53%), Positives = 129/177 (72%), Gaps = 3/177 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G43890.2 |
| Symbols: AtRABC1, AtRab18, ATRAB18 | ATRAB18 (Arabidopsis Rab GTPase homolog C1) | chr1:16649374-16650835 FORWARD
Evalue: 5e-62 | Bitscore: 233
Identities = 108/185 (58%), Positives = 147/185 (79%) |
Tair |
Show Blast
|
| AT1G43890.1 |
| Symbols: AtRABC1, AtRab18, ATRAB18 | ATRAB18 (Arabidopsis Rab GTPase homolog C1); GTP binding | chr1:16649374-16650835
Evalue: 5e-62 | Bitscore: 233
Identities = 108/185 (58%), Positives = 147/185 (79%) |
Tair |
Show Blast
|
| AT1G43890.3 |
| Symbols: AtRABC1, AtRab18, ATRAB18 | ATRAB18 (Arabidopsis Rab GTPase homolog C1) | chr1:16649374-16650835 FORWARD
Evalue: 5e-62 | Bitscore: 233
Identities = 108/185 (58%), Positives = 147/185 (79%) |
Tair |
Show Blast
|
| AT5G03530.1 |
| Symbols: AtRab18B, AtRABC2a, ATRAB, ATRAB ALPHA | ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a); GTP binding |
Evalue: 1e-61 | Bitscore: 232
Identities = 113/206 (54%), Positives = 151/206 (73%), Gaps = 3/206 (1%) |
Tair |
Show Blast
|
| AT3G09910.1 |
| Symbols: AtRab18C, AtRABC2b | AtRABC2b/AtRab18C (Arabidopsis Rab GTPase homolog C2b); GTP binding | chr3:3036869-3038126
Evalue: 4e-53 | Bitscore: 204
Identities = 108/203 (53%), Positives = 146/203 (71%), Gaps = 4/203 (1%) |
Tair |
Show Blast
|
| AT4G17530.1 |
| Symbols: ATRAB1C, ATRABD2C, RAB1C | RAB1C; GTP binding | chr4:9773734-9775437 REVERSE
Evalue: 3e-43 | Bitscore: 171
Identities = 91/198 (45%), Positives = 124/198 (62%), Gaps = 3/198 (1%) |
Tair |
Show Blast
|
| AT5G47200.1 |
| Symbols: AtRABD2b, AtRab1A | AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b); GTP binding |
Evalue: 6e-43 | Bitscore: 170
Identities = 91/198 (45%), Positives = 124/198 (62%), Gaps = 3/198 (1%) |
Tair |
Show Blast
|
| AT1G02130.1 |
| Symbols: AtRab1B, Ara-5, AtRABD2a, ARA5, ATRAB1B | ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B);
Evalue: 2e-42 | Bitscore: 168
Identities = 86/169 (50%), Positives = 116/169 (68%), Gaps = 3/169 (1%) |
Tair |
Show Blast
|
| AT3G11730.1 |
| Symbols: AtRABD1, ATFP8 | ATFP8 (Arabidopsis Rab GTPase homolog D1); GTP binding | chr3:3709496-3711403 REVERSE
Evalue: 4e-42 | Bitscore: 167
Identities = 92/201 (45%), Positives = 126/201 (62%), Gaps = 6/201 (2%) |
Tair |
Show Blast
|
| AT3G53610.3 |
| Symbols: AtRab8B, AtRABE1a, ATRAB8 | ATRAB8 | chr3:19887509-19889242 REVERSE
Evalue: 5e-41 | Bitscore: 164
Identities = 84/168 (50%), Positives = 120/168 (71%), Gaps = 4/168 (2%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
