- Gene ID
- Ot05g00510
- Locus
- Ot05g00510
- Functional Description
- topoisomerase 6 subunit A (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom05
- Last Modified On
- 09 March 2010 1h35
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- topoisomerase 6 subunit A (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
chromosome
- Molecular Function
-
1.
DNA binding
2.
catalytic activity
3.
DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
4.
ATP binding
- Biological Process
-
1.
DNA metabolic process
2.
DNA topological change
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
InterPro |
|
IPR013049 |
Spo11/DNA topoisomerase VI, subunit A, N-terminal |
InterPro |
|
IPR004085 |
DNA topoisomerase VI, subunit A |
InterPro |
|
G3DSA:3.40.1360.10 |
no description |
Gene3D |
|
IPR002815 |
Spo11/DNA topoisomerase VI, subunit A |
InterPro |
|
IPR008162 |
Inorganic pyrophosphatase |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53806.1 |
topoisomerase 6 subunit A (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%) |
NCBI |
Show Blast
|
| XP_002507137.1 |
type II DNA topoisomerase VI subunit A 2 [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 665
Identities = 316/389 (81%), Positives = 351/389 (90%), Gaps = 0/389 (0%) |
NCBI |
Show Blast
|
| XP_001417667.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 663
Identities = 314/339 (92%), Positives = 328/339 (96%), Gaps = 0/339 (0%) |
NCBI |
Show Blast
|
| NP_195902.1 |
RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein
Evalue: 3e-156 | Bitscore: 555
Identities = 253/371 (68%), Positives = 319/371 (85%), Gaps = 0/371 (0%) |
NCBI |
Show Blast
|
| XP_001763679.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-154 | Bitscore: 549
Identities = 252/392 (64%), Positives = 322/392 (82%), Gaps = 0/392 (0%) |
NCBI |
Show Blast
|
| XP_002274790.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-151 | Bitscore: 540
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%) |
NCBI |
Show Blast
|
| XP_002525197.1 |
meiotic recombination protein spo11, putative [Ricinus communis]
Evalue: 2e-151 | Bitscore: 540
Identities = 245/365 (67%), Positives = 311/365 (85%), Gaps = 0/365 (0%) |
NCBI |
Show Blast
|
| CBI32617.1 |
unnamed protein product [Vitis vinifera]
Evalue: 2e-151 | Bitscore: 539
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%) |
NCBI |
Show Blast
|
| AAO17008.1 |
Hypothetical protein [Oryza sativa Japonica Group]
Evalue: 4e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%) |
NCBI |
Show Blast
|
| EAY89531.1 |
hypothetical protein OsI_11065 [Oryza sativa Indica Group]
Evalue: 5e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC76043.1 |
unknown [environmental sequence]
Evalue: 1e-103 | Bitscore: 374
Identities = 190/215 (88%), Positives = 204/215 (94%) |
GOS |
Show Blast
|
| EAE40978.1 |
unknown [environmental sequence]
Evalue: 1e-91 | Bitscore: 336
Identities = 152/210 (72%), Positives = 189/210 (90%) |
GOS |
Show Blast
|
| EAC59772.1 |
unknown [environmental sequence]
Evalue: 6e-71 | Bitscore: 267
Identities = 119/165 (72%), Positives = 149/165 (90%) |
GOS |
Show Blast
|
| EAI16530.1 |
unknown [environmental sequence]
Evalue: 1e-39 | Bitscore: 164
Identities = 81/220 (36%), Positives = 130/220 (59%), Gaps = 2/220 (0%) |
GOS |
Show Blast
|
| EAJ81111.1 |
unknown [environmental sequence]
Evalue: 1e-33 | Bitscore: 143
Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 12/332 (3%) |
GOS |
Show Blast
|
| EAK62591.1 |
unknown [environmental sequence]
Evalue: 1e-33 | Bitscore: 143
Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 12/332 (3%) |
GOS |
Show Blast
|
| EAJ41143.1 |
unknown [environmental sequence]
Evalue: 2e-28 | Bitscore: 126
Identities = 92/356 (25%), Positives = 167/356 (46%), Gaps = 17/356 (4%) |
GOS |
Show Blast
|
| EAJ85739.1 |
unknown [environmental sequence]
Evalue: 8e-27 | Bitscore: 121
Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 12/305 (3%) |
GOS |
Show Blast
|
| EAF35968.1 |
unknown [environmental sequence]
Evalue: 4e-25 | Bitscore: 115
Identities = 69/192 (35%), Positives = 103/192 (53%), Gaps = 5/192 (2%) |
GOS |
Show Blast
|
| EAD78913.1 |
unknown [environmental sequence]
Evalue: 5e-23 | Bitscore: 108
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 8/206 (3%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53806.1 |
topoisomerase 6 subunit A (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%) |
NCBI |
Show Blast
|
| XP_002507137.1 |
type II DNA topoisomerase VI subunit A 2 [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 665
Identities = 316/389 (81%), Positives = 351/389 (90%), Gaps = 0/389 (0%) |
NCBI |
Show Blast
|
| XP_001417667.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 663
Identities = 314/339 (92%), Positives = 328/339 (96%), Gaps = 0/339 (0%) |
NCBI |
Show Blast
|
| NP_195902.1 |
RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein
Evalue: 3e-156 | Bitscore: 555
Identities = 253/371 (68%), Positives = 319/371 (85%), Gaps = 0/371 (0%) |
NCBI |
Show Blast
|
| XP_001763679.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-154 | Bitscore: 549
Identities = 252/392 (64%), Positives = 322/392 (82%), Gaps = 0/392 (0%) |
NCBI |
Show Blast
|
| XP_002274790.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-151 | Bitscore: 540
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%) |
NCBI |
Show Blast
|
| XP_002525197.1 |
meiotic recombination protein spo11, putative [Ricinus communis]
Evalue: 2e-151 | Bitscore: 540
Identities = 245/365 (67%), Positives = 311/365 (85%), Gaps = 0/365 (0%) |
NCBI |
Show Blast
|
| CBI32617.1 |
unnamed protein product [Vitis vinifera]
Evalue: 2e-151 | Bitscore: 539
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%) |
NCBI |
Show Blast
|
| AAO17008.1 |
Hypothetical protein [Oryza sativa Japonica Group]
Evalue: 4e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%) |
NCBI |
Show Blast
|
| EAY89531.1 |
hypothetical protein OsI_11065 [Oryza sativa Indica Group]
Evalue: 5e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot13g00410 |
chrom13.0001 [69988..71220]
Evalue: 1e-27 | Bitscore: 119
Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 19/269 (7%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9LZ03 |
DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1
Evalue: 1e-151 | Bitscore: 535
Identities = 252/368 (68%), Positives = 318/368 (86%) |
SwissP |
Show Blast
|
| Q9Y5K1 |
Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1
Evalue: 2e-73 | Bitscore: 276
Identities = 139/352 (39%), Positives = 227/352 (64%), Gaps = 5/352 (1%) |
SwissP |
Show Blast
|
| Q9WTK8 |
Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2 SV=2
Evalue: 4e-71 | Bitscore: 269
Identities = 135/352 (38%), Positives = 219/352 (62%), Gaps = 5/352 (1%) |
SwissP |
Show Blast
|
| Q9M4A2 |
Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1
Evalue: 1e-54 | Bitscore: 214
Identities = 104/281 (37%), Positives = 171/281 (60%), Gaps = 1/281 (0%) |
SwissP |
Show Blast
|
| A2BLE8 |
Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1
Evalue: 5e-52 | Bitscore: 205
Identities = 131/387 (33%), Positives = 209/387 (54%), Gaps = 26/387 (6%) |
SwissP |
Show Blast
|
| Q9M4A1 |
Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1
Evalue: 7e-50 | Bitscore: 198
Identities = 108/313 (34%), Positives = 186/313 (59%), Gaps = 14/313 (4%) |
SwissP |
Show Blast
|
| Q9YE67 |
Type II DNA topoisomerase VI subunit A OS=Aeropyrum pernix GN=top6A PE=3 SV=2
Evalue: 3e-47 | Bitscore: 189
Identities = 114/356 (32%), Positives = 190/356 (53%), Gaps = 24/356 (6%) |
SwissP |
Show Blast
|
| O05208 |
Type II DNA topoisomerase VI subunit A OS=Sulfolobus shibatae GN=top6A PE=1 SV=1
Evalue: 6e-44 | Bitscore: 178
Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 28/381 (7%) |
SwissP |
Show Blast
|
| Q971T1 |
Type II DNA topoisomerase VI subunit A OS=Sulfolobus tokodaii GN=top6A PE=3 SV=1
Evalue: 3e-42 | Bitscore: 172
Identities = 119/379 (31%), Positives = 198/379 (52%), Gaps = 26/379 (6%) |
SwissP |
Show Blast
|
| Q9V134 |
Type II DNA topoisomerase VI subunit A OS=Pyrococcus abyssi GN=top6A PE=3 SV=1
Evalue: 1e-41 | Bitscore: 171
Identities = 104/362 (28%), Positives = 182/362 (50%), Gaps = 18/362 (4%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT5G02820.1 |
| Symbols: BIN5, RHL2 | RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) |
Evalue: 1e-152 | Bitscore: 535
Identities = 252/368 (68%), Positives = 318/368 (86%) |
Tair |
Show Blast
|
| AT3G13170.1 |
| Symbols: ATSPO11-1 | ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) | chr3:4231567-4234199
Evalue: 1e-55 | Bitscore: 214
Identities = 104/281 (37%), Positives = 171/281 (60%), Gaps = 1/281 (0%) |
Tair |
Show Blast
|
| AT1G63990.1 |
| Symbols: | DNA topoisomerase VIA, putative (SPO11-2) | chr1:23746986-23749014 REVERSE
Evalue: 6e-51 | Bitscore: 198
Identities = 108/313 (34%), Positives = 186/313 (59%), Gaps = 14/313 (4%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
