- Gene ID
- Ot04g02770
- Locus
- Ot04g02770
- Functional Description
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Gene Type
- protein-coding gene
- Contig
- chrom04
- Last Modified On
- 09 March 2010 0h41
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- Actin-related protein Arp2/3 complex, subunit Arp2 (ISS)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
protein binding
- Biological Process
-
n/a
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51675.1 |
Actin-related protein Arp2/3 complex, subunit Arp2 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 877
Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) |
NCBI |
Show Blast
|
| XP_001417251.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 735
Identities = 351/425 (82%), Positives = 389/425 (91%), Gaps = 1/425 (0%) |
NCBI |
Show Blast
|
| XP_002504876.1 |
actin superfamily [Micromonas sp. RCC299]
Evalue: 1e-145 | Bitscore: 520
Identities = 254/435 (58%), Positives = 324/435 (74%), Gaps = 13/435 (2%) |
NCBI |
Show Blast
|
| EEH55496.1 |
actin superfamily [Micromonas pusilla CCMP1545]
Evalue: 1e-145 | Bitscore: 520
Identities = 252/451 (55%), Positives = 330/451 (73%), Gaps = 27/451 (5%) |
NCBI |
Show Blast
|
| NP_564051.1 |
ATARP4; structural constituent of cytoskeleton [Arabidopsis thaliana] sp|Q84M92.1|ARP4_ARATH RecName: Full=Actin-related protein 4
Evalue: 3e-122 | Bitscore: 442
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
NCBI |
Show Blast
|
| AAM65324.1 |
unknown [Arabidopsis thaliana]
Evalue: 6e-122 | Bitscore: 441
Identities = 218/449 (48%), Positives = 306/449 (68%), Gaps = 33/449 (7%) |
NCBI |
Show Blast
|
| AAM53244.1 |
actin-related protein 4 [Arabidopsis thaliana]
Evalue: 2e-121 | Bitscore: 440
Identities = 214/445 (48%), Positives = 304/445 (68%), Gaps = 27/445 (6%) |
NCBI |
Show Blast
|
| AAW81736.1 |
Putative Acttin-related protein 4 (ARP4) [Brassica oleracea]
Evalue: 4e-120 | Bitscore: 436
Identities = 213/447 (47%), Positives = 303/447 (67%), Gaps = 28/447 (6%) |
NCBI |
Show Blast
|
| AT1G18450.1 |
| Symbols: ARP4, ATARP4 | ATARP4 (ACTIN-RELATED PROTEIN 4); structural constituent of cytoskeleton |
Evalue: 1e-122 | Bitscore: 433
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
Tair |
Show Blast
|
| Q84M92 |
Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1
Evalue: 1e-120 | Bitscore: 433
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAD15751.1 |
unknown [environmental sequence]
Evalue: 1e-65 | Bitscore: 250
Identities = 128/232 (55%), Positives = 173/232 (74%), Gaps = 10/232 (4%) |
GOS |
Show Blast
|
| EAK11583.1 |
unknown [environmental sequence]
Evalue: 1e-62 | Bitscore: 240
Identities = 153/423 (36%), Positives = 225/423 (53%), Gaps = 57/423 (13%) |
GOS |
Show Blast
|
| EAE32562.1 |
unknown [environmental sequence]
Evalue: 2e-55 | Bitscore: 216
Identities = 101/113 (89%), Positives = 106/113 (93%) |
GOS |
Show Blast
|
| EAB74616.1 |
unknown [environmental sequence]
Evalue: 1e-33 | Bitscore: 144
Identities = 78/191 (40%), Positives = 110/191 (57%), Gaps = 18/191 (9%) |
GOS |
Show Blast
|
| EAC22014.1 |
unknown [environmental sequence]
Evalue: 2e-05 | Bitscore: 50
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%) |
GOS |
Show Blast
|
| EAC89113.1 |
unknown [environmental sequence]
Evalue: 0.0001 | Bitscore: 47
Identities = 22/34 (64%), Positives = 27/34 (79%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51675.1 |
Actin-related protein Arp2/3 complex, subunit Arp2 (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 877
Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) |
NCBI |
Show Blast
|
| XP_001417251.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 735
Identities = 351/425 (82%), Positives = 389/425 (91%), Gaps = 1/425 (0%) |
NCBI |
Show Blast
|
| XP_002504876.1 |
actin superfamily [Micromonas sp. RCC299]
Evalue: 1e-145 | Bitscore: 520
Identities = 254/435 (58%), Positives = 324/435 (74%), Gaps = 13/435 (2%) |
NCBI |
Show Blast
|
| EEH55496.1 |
actin superfamily [Micromonas pusilla CCMP1545]
Evalue: 1e-145 | Bitscore: 520
Identities = 252/451 (55%), Positives = 330/451 (73%), Gaps = 27/451 (5%) |
NCBI |
Show Blast
|
| NP_564051.1 |
ATARP4; structural constituent of cytoskeleton [Arabidopsis thaliana] sp|Q84M92.1|ARP4_ARATH RecName: Full=Actin-related protein 4
Evalue: 3e-122 | Bitscore: 442
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
NCBI |
Show Blast
|
| AAM65324.1 |
unknown [Arabidopsis thaliana]
Evalue: 6e-122 | Bitscore: 441
Identities = 218/449 (48%), Positives = 306/449 (68%), Gaps = 33/449 (7%) |
NCBI |
Show Blast
|
| AAM53244.1 |
actin-related protein 4 [Arabidopsis thaliana]
Evalue: 2e-121 | Bitscore: 440
Identities = 214/445 (48%), Positives = 304/445 (68%), Gaps = 27/445 (6%) |
NCBI |
Show Blast
|
| AAW81736.1 |
Putative Acttin-related protein 4 (ARP4) [Brassica oleracea]
Evalue: 4e-120 | Bitscore: 436
Identities = 213/447 (47%), Positives = 303/447 (67%), Gaps = 28/447 (6%) |
NCBI |
Show Blast
|
| XP_002511960.1 |
protein binding protein, putative [Ricinus communis]
Evalue: 8e-117 | Bitscore: 424
Identities = 211/446 (47%), Positives = 297/446 (66%), Gaps = 26/446 (5%) |
NCBI |
Show Blast
|
| XP_002317939.1 |
actin related protein [Populus trichocarpa]
Evalue: 4e-116 | Bitscore: 422
Identities = 206/446 (46%), Positives = 296/446 (66%), Gaps = 27/446 (6%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot16g00370 |
chrom16.0001 [46940..47431,47596..48594] inframe stop codon
Evalue: 1e-55 | Bitscore: 212
Identities = 123/348 (35%), Positives = 186/348 (53%), Gaps = 48/348 (13%) |
Self |
Show Blast
|
| Ot14g03380 |
chrom14.0001 [487878..489098]
Evalue: 1e-41 | Bitscore: 165
Identities = 120/429 (27%), Positives = 202/429 (47%), Gaps = 59/429 (13%) |
Self |
Show Blast
|
| Ot01g02250 |
chrom01.0001 [333838..335071,335131..335603,335654..335731,
Evalue: 1e-32 | Bitscore: 135
Identities = 123/441 (27%), Positives = 195/441 (44%), Gaps = 67/441 (15%) |
Self |
Show Blast
|
| Ot14g02140 |
chrom14.0001 [311572..311973]
Evalue: 2e-14 | Bitscore: 75
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 27/144 (18%) |
Self |
Show Blast
|
| Ot08g01330 |
chrom08.0001 [228810..229388]
Evalue: 0.0004 | Bitscore: 41
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 18/145 (12%) |
Self |
Show Blast
|
| Ot08g01320 |
chrom08.0001 [227860..227878,227964..228649] incomplete
Evalue: 0.0004 | Bitscore: 41
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 28/204 (13%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q84M92 |
Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1
Evalue: 1e-120 | Bitscore: 433
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
SwissP |
Show Blast
|
| A2YR10 |
Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2
Evalue: 1e-109 | Bitscore: 395
Identities = 210/445 (47%), Positives = 293/445 (65%), Gaps = 23/445 (5%) |
SwissP |
Show Blast
|
| Q6ZJW9 |
Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1
Evalue: 1e-109 | Bitscore: 395
Identities = 210/445 (47%), Positives = 293/445 (65%), Gaps = 23/445 (5%) |
SwissP |
Show Blast
|
| Q9Z2N8 |
Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2
Evalue: 2e-83 | Bitscore: 310
Identities = 162/434 (37%), Positives = 258/434 (59%), Gaps = 19/434 (4%) |
SwissP |
Show Blast
|
| O96019 |
Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1
Evalue: 4e-83 | Bitscore: 308
Identities = 162/434 (37%), Positives = 257/434 (59%), Gaps = 19/434 (4%) |
SwissP |
Show Blast
|
| Q4R333 |
Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1
Evalue: 3e-82 | Bitscore: 305
Identities = 161/434 (37%), Positives = 256/434 (58%), Gaps = 19/434 (4%) |
SwissP |
Show Blast
|
| O94805 |
Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1
Evalue: 8e-82 | Bitscore: 304
Identities = 165/431 (38%), Positives = 254/431 (58%), Gaps = 16/431 (3%) |
SwissP |
Show Blast
|
| P86173 |
Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2
Evalue: 2e-81 | Bitscore: 302
Identities = 165/431 (38%), Positives = 254/431 (58%), Gaps = 16/431 (3%) |
SwissP |
Show Blast
|
| A4FUX8 |
Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1
Evalue: 2e-81 | Bitscore: 302
Identities = 165/431 (38%), Positives = 254/431 (58%), Gaps = 16/431 (3%) |
SwissP |
Show Blast
|
| Q99MR0 |
Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1
Evalue: 2e-81 | Bitscore: 302
Identities = 165/431 (38%), Positives = 254/431 (58%), Gaps = 16/431 (3%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G18450.1 |
| Symbols: ARP4, ATARP4 | ATARP4 (ACTIN-RELATED PROTEIN 4); structural constituent of cytoskeleton |
Evalue: 1e-122 | Bitscore: 433
Identities = 215/446 (48%), Positives = 305/446 (68%), Gaps = 27/446 (6%) |
Tair |
Show Blast
|
| AT3G12110.1 |
| Symbols: ACT11 | ACT11 (ACTIN-11); structural constituent of cytoskeleton | chr3:3858122-3859615 FORWARD
Evalue: 2e-66 | Bitscore: 249
Identities = 158/428 (36%), Positives = 231/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT5G09810.1 |
| Symbols: ACT2/7, ACT7 | ACT7 (actin 7) | chr5:3052810-3054221 FORWARD
Evalue: 2e-66 | Bitscore: 249
Identities = 157/428 (36%), Positives = 231/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT1G49240.1 |
| Symbols: ACT8 | ACT8 (ACTIN 8); structural constituent of cytoskeleton | chr1:18220207-18221615 FORWARD
Evalue: 8e-66 | Bitscore: 247
Identities = 156/428 (36%), Positives = 228/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT3G18780.2 |
| Symbols: DER1, LSR2, ENL2, ACT2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton | chr3:6475541-6476838
Evalue: 1e-65 | Bitscore: 247
Identities = 156/428 (36%), Positives = 228/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT2G37620.2 |
| Symbols: AAC1, ACT1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton | chr2:15786839-15788319 FORWARD
Evalue: 2e-65 | Bitscore: 246
Identities = 153/428 (35%), Positives = 231/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT3G53750.1 |
| Symbols: ACT3 | ACT3 (ACTIN 3); structural constituent of cytoskeleton | chr3:19926902-19928349 FORWARD
Evalue: 2e-65 | Bitscore: 246
Identities = 153/428 (35%), Positives = 231/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT2G37620.1 |
| Symbols: AAC1, ACT1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton | chr2:15786839-15788319 FORWARD
Evalue: 2e-65 | Bitscore: 246
Identities = 153/428 (35%), Positives = 231/428 (53%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT3G46520.1 |
| Symbols: ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton | chr3:17139552-17140966 FORWARD
Evalue: 3e-65 | Bitscore: 245
Identities = 155/428 (36%), Positives = 232/428 (54%), Gaps = 57/428 (13%) |
Tair |
Show Blast
|
| AT2G42100.1 |
| Symbols: | actin, putative | chr2:17567289-17569023 FORWARD
Evalue: 3e-65 | Bitscore: 245
Identities = 155/425 (36%), Positives = 229/425 (53%), Gaps = 57/425 (13%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
