- Gene ID
- Ot04g01900
- Locus
- Ot04g01900
- Functional Description
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Gene Type
- protein-coding gene
- Contig
- chrom04
- Last Modified On
- 09 March 2010 0h25
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins (
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
intracellular anatomical structure
- Molecular Function
-
1.
DNA binding
2.
ATP binding
3.
transcription factor binding
- Biological Process
-
1.
phosphorelay signal transduction system
2.
regulation of transcription, DNA-templated
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51588.1 |
possible apospory-associated protein (ISS) [Ostreococcus tauri]
Evalue: 2e-111 | Bitscore: 404
Identities = 209/209 (100%), Positives = 209/209 (100%), Gaps = 0/209 (0%) |
NCBI |
Show Blast
|
| XP_001417213.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-96 | Bitscore: 355
Identities = 183/206 (88%), Positives = 192/206 (93%), Gaps = 0/206 (0%) |
NCBI |
Show Blast
|
| XP_002501516.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 3e-74 | Bitscore: 281
Identities = 143/208 (68%), Positives = 176/208 (84%), Gaps = 6/208 (2%) |
NCBI |
Show Blast
|
| EEH57938.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-74 | Bitscore: 281
Identities = 142/207 (68%), Positives = 175/207 (84%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| ABB02623.1 |
unknown [Solanum tuberosum]
Evalue: 4e-71 | Bitscore: 271
Identities = 134/205 (65%), Positives = 168/205 (81%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| ABK23074.1 |
unknown [Picea sitchensis]
Evalue: 8e-71 | Bitscore: 270
Identities = 135/205 (65%), Positives = 169/205 (82%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| EEC79531.1 |
hypothetical protein OsI_20631 [Oryza sativa Indica Group]
Evalue: 1e-70 | Bitscore: 270
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| NP_001056046.1 |
Os05g0516600 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-70 | Bitscore: 269
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| ACL54017.1 |
unknown [Zea mays]
Evalue: 2e-70 | Bitscore: 268
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| Q40787 |
Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1
Evalue: 2e-70 | Bitscore: 264
Identities = 133/207 (64%), Positives = 160/207 (77%), Gaps = 4/207 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAJ10721.1 |
unknown [environmental sequence]
Evalue: 4e-24 | Bitscore: 110
Identities = 58/151 (38%), Positives = 88/151 (58%), Gaps = 9/151 (5%) |
GOS |
Show Blast
|
| EAK24025.1 |
unknown [environmental sequence]
Evalue: 6e-24 | Bitscore: 110
Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 17/202 (8%) |
GOS |
Show Blast
|
| EAB57280.1 |
unknown [environmental sequence]
Evalue: 2e-23 | Bitscore: 108
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 5/150 (3%) |
GOS |
Show Blast
|
| EAC93829.1 |
unknown [environmental sequence]
Evalue: 3e-23 | Bitscore: 108
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 17/192 (8%) |
GOS |
Show Blast
|
| EAC17186.1 |
unknown [environmental sequence]
Evalue: 1e-22 | Bitscore: 105
Identities = 44/69 (63%), Positives = 56/69 (81%) |
GOS |
Show Blast
|
| EAC00141.1 |
unknown [environmental sequence]
Evalue: 2e-21 | Bitscore: 102
Identities = 59/163 (36%), Positives = 95/163 (58%), Gaps = 12/163 (7%) |
GOS |
Show Blast
|
| EAK45458.1 |
unknown [environmental sequence]
Evalue: 2e-19 | Bitscore: 94
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 10/154 (6%) |
GOS |
Show Blast
|
| EAC60855.1 |
unknown [environmental sequence]
Evalue: 3e-19 | Bitscore: 94
Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 10/159 (6%) |
GOS |
Show Blast
|
| EAB64767.1 |
unknown [environmental sequence]
Evalue: 7e-16 | Bitscore: 83
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 19/210 (9%) |
GOS |
Show Blast
|
| EAD18748.1 |
unknown [environmental sequence]
Evalue: 1e-15 | Bitscore: 82
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 9/144 (6%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51588.1 |
possible apospory-associated protein (ISS) [Ostreococcus tauri]
Evalue: 2e-111 | Bitscore: 404
Identities = 209/209 (100%), Positives = 209/209 (100%), Gaps = 0/209 (0%) |
NCBI |
Show Blast
|
| XP_001417213.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-96 | Bitscore: 355
Identities = 183/206 (88%), Positives = 192/206 (93%), Gaps = 0/206 (0%) |
NCBI |
Show Blast
|
| XP_002501516.1 |
ras-related gtp-binding protein [Micromonas sp. RCC299]
Evalue: 3e-74 | Bitscore: 281
Identities = 143/208 (68%), Positives = 176/208 (84%), Gaps = 6/208 (2%) |
NCBI |
Show Blast
|
| EEH57938.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-74 | Bitscore: 281
Identities = 142/207 (68%), Positives = 175/207 (84%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| ABB02623.1 |
unknown [Solanum tuberosum]
Evalue: 4e-71 | Bitscore: 271
Identities = 134/205 (65%), Positives = 168/205 (81%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| Q40787 |
RecName: Full=Ras-related protein Rab7
Evalue: 7e-71 | Bitscore: 270
Identities = 136/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| ABK23074.1 |
unknown [Picea sitchensis]
Evalue: 8e-71 | Bitscore: 270
Identities = 135/205 (65%), Positives = 169/205 (82%), Gaps = 3/205 (1%) |
NCBI |
Show Blast
|
| EEC79531.1 |
hypothetical protein OsI_20631 [Oryza sativa Indica Group]
Evalue: 1e-70 | Bitscore: 270
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| NP_001056046.1 |
Os05g0516600 [Oryza sativa (japonica cultivar-group)]
Evalue: 2e-70 | Bitscore: 269
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| ACL54017.1 |
unknown [Zea mays]
Evalue: 2e-70 | Bitscore: 268
Identities = 135/207 (65%), Positives = 168/207 (81%), Gaps = 4/207 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot05g01980 |
chrom05.0001 [287590..287601,287755..288841,288882..289075,
Evalue: 3e-28 | Bitscore: 119
Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 10/161 (6%) |
Self |
Show Blast
|
| Ot08g02530 |
chrom08.0001 [428529..428580,428625..429268]
Evalue: 4e-26 | Bitscore: 112
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 9/164 (5%) |
Self |
Show Blast
|
| Ot07g00720 |
chrom07.0001 [107510..108142,108346..108381]
Evalue: 3e-25 | Bitscore: 109
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 17/192 (8%) |
Self |
Show Blast
|
| Ot06g02360 |
chrom06.0001 [356254..356919]
Evalue: 5e-21 | Bitscore: 95
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 10/161 (6%) |
Self |
Show Blast
|
| Ot09g03940 |
chrom09.0001 [596111..596884]
Evalue: 1e-19 | Bitscore: 91
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 29/181 (16%) |
Self |
Show Blast
|
| Ot05g02380 |
chrom05.0001 [355350..355838]
Evalue: 3e-19 | Bitscore: 90
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 10/125 (8%) |
Self |
Show Blast
|
| Ot07g00700 |
chrom07.0001 [104773..104845,104932..105151,105208..105655]
Evalue: 7e-16 | Bitscore: 78
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 40/191 (20%) |
Self |
Show Blast
|
| Ot06g03220 |
chrom06.0001 [488910..489088,489120..489370,489411..489817,
Evalue: 3e-15 | Bitscore: 76
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 25/202 (12%) |
Self |
Show Blast
|
| Ot13g01210 |
chrom13.0001 [194620..195253,195289..195335]
Evalue: 7e-14 | Bitscore: 72
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 12/147 (8%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q40787 |
Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1
Evalue: 2e-70 | Bitscore: 264
Identities = 133/207 (64%), Positives = 160/207 (77%), Gaps = 4/207 (1%) |
SwissP |
Show Blast
|
| P31022 |
Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
Evalue: 5e-69 | Bitscore: 260
Identities = 127/205 (61%), Positives = 158/205 (77%), Gaps = 3/205 (1%) |
SwissP |
Show Blast
|
| O24461 |
Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1
Evalue: 8e-69 | Bitscore: 259
Identities = 130/206 (63%), Positives = 156/206 (75%), Gaps = 4/206 (1%) |
SwissP |
Show Blast
|
| Q9XER8 |
Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1
Evalue: 5e-68 | Bitscore: 256
Identities = 128/206 (62%), Positives = 157/206 (76%), Gaps = 4/206 (1%) |
SwissP |
Show Blast
|
| O04157 |
Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1
Evalue: 6e-68 | Bitscore: 256
Identities = 127/204 (62%), Positives = 152/204 (74%), Gaps = 6/204 (2%) |
SwissP |
Show Blast
|
| P36411 |
Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1
Evalue: 8e-67 | Bitscore: 253
Identities = 127/206 (61%), Positives = 154/206 (74%), Gaps = 7/206 (3%) |
SwissP |
Show Blast
|
| P93267 |
Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1
Evalue: 2e-66 | Bitscore: 251
Identities = 125/206 (60%), Positives = 151/206 (73%), Gaps = 3/206 (1%) |
SwissP |
Show Blast
|
| Q43463 |
Ras-related protein Rab7 OS=Glycine max PE=2 SV=1
Evalue: 1e-65 | Bitscore: 249
Identities = 122/204 (59%), Positives = 150/204 (73%), Gaps = 3/204 (1%) |
SwissP |
Show Blast
|
| P36864 |
GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1
Evalue: 3e-65 | Bitscore: 248
Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 5/206 (2%) |
SwissP |
Show Blast
|
| Q39573 |
GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1
Evalue: 3e-65 | Bitscore: 247
Identities = 126/206 (61%), Positives = 155/206 (75%), Gaps = 4/206 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G52280.1 |
| Symbols: AtRABG3d | AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding | chr1:19471819-19473118 REVERSE
Evalue: 1e-69 | Bitscore: 259
Identities = 129/205 (62%), Positives = 155/205 (75%), Gaps = 3/205 (1%) |
Tair |
Show Blast
|
| AT1G49300.1 |
| Symbols: ATRAB7, ATRABG3E | ATRAB7; GTP binding | chr1:18238510-18240636 FORWARD
Evalue: 2e-69 | Bitscore: 258
Identities = 130/205 (63%), Positives = 155/205 (75%), Gaps = 3/205 (1%) |
Tair |
Show Blast
|
| AT1G49300.2 |
| Symbols: ATRAB7, ATRABG3E | ATRAB7; GTP binding | chr1:18238510-18240636 FORWARD
Evalue: 2e-69 | Bitscore: 258
Identities = 130/205 (63%), Positives = 155/205 (75%), Gaps = 3/205 (1%) |
Tair |
Show Blast
|
| AT3G18820.1 |
| Symbols: AtRABG3f, AtRab7B | AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f); GTP binding | chr3:6484272-6486011
Evalue: 2e-69 | Bitscore: 258
Identities = 128/205 (62%), Positives = 157/205 (76%), Gaps = 3/205 (1%) |
Tair |
Show Blast
|
| AT3G16100.1 |
| Symbols: AtRABG3c, AtRab7D | AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c); GTP binding | chr3:5459276-5460562
Evalue: 6e-69 | Bitscore: 256
Identities = 128/205 (62%), Positives = 155/205 (75%), Gaps = 3/205 (1%) |
Tair |
Show Blast
|
| AT1G22740.1 |
| Symbols: AtRABG3b, RAB7 | RAB7 (Ras-related protein 7); GTP binding | chr1:8049236-8050483 FORWARD
Evalue: 6e-69 | Bitscore: 256
Identities = 127/204 (62%), Positives = 152/204 (74%), Gaps = 6/204 (2%) |
Tair |
Show Blast
|
| AT4G09720.1 |
| Symbols: AtRABG3a | AtRABG3a; GTP binding | chr4:6133098-6134956 FORWARD
Evalue: 6e-63 | Bitscore: 236
Identities = 124/207 (59%), Positives = 149/207 (71%), Gaps = 9/207 (4%) |
Tair |
Show Blast
|
| AT2G21880.1 |
| Symbols: AtRab7A, AtRABG2 | AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2); GTP binding | chr2:9331979-9333250
Evalue: 1e-60 | Bitscore: 229
Identities = 110/168 (65%), Positives = 134/168 (79%), Gaps = 2/168 (1%) |
Tair |
Show Blast
|
| AT2G21880.2 |
| Symbols: AtRab7A, AtRABG2 | AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2) | chr2:9331979-9333250 REVERSE
Evalue: 3e-53 | Bitscore: 204
Identities = 102/168 (60%), Positives = 126/168 (75%), Gaps = 10/168 (5%) |
Tair |
Show Blast
|
| AT4G09720.2 |
| Symbols: AtRABG3a | AtRABG3a; GTP binding | chr4:6133402-6134956 FORWARD
Evalue: 1e-47 | Bitscore: 186
Identities = 93/172 (54%), Positives = 116/172 (67%), Gaps = 3/172 (1%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
