- Gene ID
- Ot04g00740
- Locus
- Ot04g00740
- Functional Description
- unnamed product
- Gene Type
- protein-coding gene
- Contig
- chrom04
- Last Modified On
- 09 March 2010 0h06
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- unnamed product
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
retromer complex
- Molecular Function
-
n/a
- Biological Process
-
1.
intracellular protein transport
2.
vacuolar transport
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR005377 |
Vacuolar protein sorting-associated protein 26 |
InterPro |
|
PTHR12233 |
VACUOLAR PROTEIN SORTING 26 RELATED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51472.1 |
unnamed protein product [Ostreococcus tauri]
Evalue: 2e-146 | Bitscore: 522
Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%) |
NCBI |
Show Blast
|
| XP_001417426.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-123 | Bitscore: 444
Identities = 227/272 (83%), Positives = 246/272 (90%), Gaps = 0/272 (0%) |
NCBI |
Show Blast
|
| XP_001780780.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-90 | Bitscore: 336
Identities = 184/274 (67%), Positives = 219/274 (79%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| XP_001773421.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-90 | Bitscore: 334
Identities = 183/274 (66%), Positives = 220/274 (80%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| XP_002504724.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 9e-90 | Bitscore: 333
Identities = 182/275 (66%), Positives = 221/275 (80%), Gaps = 4/275 (1%) |
NCBI |
Show Blast
|
| XP_001779262.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-89 | Bitscore: 333
Identities = 182/274 (66%), Positives = 219/274 (79%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| ABK27154.1 |
unknown [Picea sitchensis]
Evalue: 4e-86 | Bitscore: 322
Identities = 175/272 (64%), Positives = 215/272 (79%), Gaps = 3/272 (1%) |
NCBI |
Show Blast
|
| NP_001148716.1 |
vacuolar protein sorting homolog26 [Zea mays]
Evalue: 2e-84 | Bitscore: 316
Identities = 170/259 (65%), Positives = 209/259 (80%), Gaps = 2/259 (0%) |
NCBI |
Show Blast
|
| XP_002442177.1 |
hypothetical protein SORBIDRAFT_08g015540 [Sorghum bicolor]
Evalue: 2e-84 | Bitscore: 315
Identities = 173/272 (63%), Positives = 213/272 (78%), Gaps = 3/272 (1%) |
NCBI |
Show Blast
|
| NP_001068312.1 |
Os11g0629200 [Oryza sativa (japonica cultivar-group)]
Evalue: 3e-84 | Bitscore: 315
Identities = 170/259 (65%), Positives = 211/259 (81%), Gaps = 2/259 (0%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAH51240.1 |
unknown [environmental sequence]
Evalue: 1e-34 | Bitscore: 145
Identities = 75/100 (75%), Positives = 77/100 (77%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL51472.1 |
unnamed protein product [Ostreococcus tauri]
Evalue: 2e-146 | Bitscore: 522
Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%) |
NCBI |
Show Blast
|
| XP_001417426.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-123 | Bitscore: 444
Identities = 227/272 (83%), Positives = 246/272 (90%), Gaps = 0/272 (0%) |
NCBI |
Show Blast
|
| XP_001780780.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-90 | Bitscore: 336
Identities = 184/274 (67%), Positives = 219/274 (79%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| XP_001773421.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-90 | Bitscore: 334
Identities = 183/274 (66%), Positives = 220/274 (80%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| XP_002504724.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 9e-90 | Bitscore: 333
Identities = 182/275 (66%), Positives = 221/275 (80%), Gaps = 4/275 (1%) |
NCBI |
Show Blast
|
| XP_001779262.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-89 | Bitscore: 333
Identities = 182/274 (66%), Positives = 219/274 (79%), Gaps = 3/274 (1%) |
NCBI |
Show Blast
|
| ABK27154.1 |
unknown [Picea sitchensis]
Evalue: 4e-86 | Bitscore: 322
Identities = 175/272 (64%), Positives = 215/272 (79%), Gaps = 3/272 (1%) |
NCBI |
Show Blast
|
| NP_001148716.1 |
vacuolar protein sorting homolog26 [Zea mays]
Evalue: 2e-84 | Bitscore: 316
Identities = 170/259 (65%), Positives = 209/259 (80%), Gaps = 2/259 (0%) |
NCBI |
Show Blast
|
| XP_002442177.1 |
hypothetical protein SORBIDRAFT_08g015540 [Sorghum bicolor]
Evalue: 2e-84 | Bitscore: 315
Identities = 173/272 (63%), Positives = 213/272 (78%), Gaps = 3/272 (1%) |
NCBI |
Show Blast
|
| NP_001068312.1 |
Os11g0629200 [Oryza sativa (japonica cultivar-group)]
Evalue: 3e-84 | Bitscore: 315
Identities = 170/259 (65%), Positives = 211/259 (81%), Gaps = 2/259 (0%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9T091 |
Vacuolar protein sorting-associated protein 26 OS=Arabidopsis thaliana GN=At4g27690 PE=2 SV=2
Evalue: 9e-81 | Bitscore: 300
Identities = 154/259 (59%), Positives = 191/259 (73%), Gaps = 2/259 (0%) |
SwissP |
Show Blast
|
| Q55CA0 |
Vacuolar protein sorting-associated protein 26 OS=Dictyostelium discoideum GN=vps26 PE=2 SV=1
Evalue: 5e-76 | Bitscore: 284
Identities = 148/262 (56%), Positives = 190/262 (72%), Gaps = 3/262 (1%) |
SwissP |
Show Blast
|
| Q8I4T1 |
Vacuolar protein sorting-associated protein 26 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2415w PE=3 SV=1
Evalue: 2e-75 | Bitscore: 282
Identities = 134/263 (50%), Positives = 188/263 (71%), Gaps = 2/263 (0%) |
SwissP |
Show Blast
|
| Q6DH23 |
Vacuolar protein sorting-associated protein 26B-like OS=Danio rerio GN=vps26bl PE=2 SV=1
Evalue: 2e-74 | Bitscore: 279
Identities = 146/259 (56%), Positives = 188/259 (72%), Gaps = 4/259 (1%) |
SwissP |
Show Blast
|
| Q7ZV03 |
Vacuolar protein sorting-associated protein 26B OS=Danio rerio GN=vps26b PE=2 SV=1
Evalue: 3e-74 | Bitscore: 278
Identities = 146/259 (56%), Positives = 189/259 (72%), Gaps = 4/259 (1%) |
SwissP |
Show Blast
|
| Q9W552 |
Vacuolar protein sorting-associated protein 26 OS=Drosophila melanogaster GN=Vps26 PE=2 SV=1
Evalue: 4e-74 | Bitscore: 278
Identities = 148/274 (54%), Positives = 185/274 (67%), Gaps = 5/274 (1%) |
SwissP |
Show Blast
|
| Q6AY86 |
Vacuolar protein sorting-associated protein 26A OS=Rattus norvegicus GN=Vps26a PE=2 SV=1
Evalue: 5e-74 | Bitscore: 277
Identities = 152/275 (55%), Positives = 192/275 (69%), Gaps = 5/275 (1%) |
SwissP |
Show Blast
|
| P40336 |
Vacuolar protein sorting-associated protein 26A OS=Mus musculus GN=Vps26a PE=2 SV=1
Evalue: 7e-74 | Bitscore: 277
Identities = 151/275 (54%), Positives = 192/275 (69%), Gaps = 5/275 (1%) |
SwissP |
Show Blast
|
| Q0VD53 |
Vacuolar protein sorting-associated protein 26A OS=Bos taurus GN=VPS26A PE=2 SV=1
Evalue: 9e-74 | Bitscore: 276
Identities = 151/275 (54%), Positives = 192/275 (69%), Gaps = 5/275 (1%) |
SwissP |
Show Blast
|
| O75436 |
Vacuolar protein sorting-associated protein 26A OS=Homo sapiens GN=VPS26A PE=1 SV=2
Evalue: 9e-74 | Bitscore: 276
Identities = 151/275 (54%), Positives = 192/275 (69%), Gaps = 5/275 (1%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT4G27690.1 |
| Symbols: | vacuolar protein sorting-associated protein 26, putative / VPS26, putative | chr4:13824025-13826241
Evalue: 8e-82 | Bitscore: 300
Identities = 154/259 (59%), Positives = 191/259 (73%), Gaps = 2/259 (0%) |
Tair |
Show Blast
|
| AT5G53530.1 |
| Symbols: | vacuolar protein sorting-associated protein 26, putative / VPS26, putative | chr5:21763501-21765382
Evalue: 3e-81 | Bitscore: 298
Identities = 152/258 (58%), Positives = 192/258 (74%), Gaps = 2/258 (0%) |
Tair |
Show Blast
|
| AT4G27690.2 |
| Symbols: | vacuolar protein sorting-associated protein 26, putative / VPS26, putative | chr4:13824330-13826241
Evalue: 4e-81 | Bitscore: 297
Identities = 154/259 (59%), Positives = 191/259 (73%), Gaps = 2/259 (0%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
- n/a
-
|
