- Gene ID
- Ot03g04770
- Locus
- Ot03g04770
- Functional Description
- unnamed product
- Gene Type
- protein-coding gene
- Contig
- chrom03
- Last Modified On
- 08 March 2010 23h35
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- unnamed product
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
membrane
- Molecular Function
-
n/a
- Biological Process
-
1.
photosynthesis, light harvesting
Protein Domains
| Domain ID | Description | Database |
|---|
|
SSF103511 |
Chlorophyll a-b binding protein |
superfamily |
|
PF00504 |
Chloroa_b-bind |
HMMPfam |
|
IPR001344 |
Chlorophyll A-B binding protein |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53128.1 |
chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Evalue: 3e-120 | Bitscore: 434
Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) |
NCBI |
Show Blast
|
| XP_001417062.1 |
chlorophyll a/b binding, maybe photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-92 | Bitscore: 341
Identities = 174/214 (81%), Positives = 178/214 (83%), Gaps = 19/214 (8%) |
NCBI |
Show Blast
|
| XP_002507283.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 2e-73 | Bitscore: 278
Identities = 140/214 (65%), Positives = 161/214 (75%), Gaps = 19/214 (8%) |
NCBI |
Show Blast
|
| EEH60670.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 1e-72 | Bitscore: 276
Identities = 139/191 (72%), Positives = 155/191 (81%), Gaps = 2/191 (1%) |
NCBI |
Show Blast
|
| tpg|DAA05941.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca2 [Micromonas sp. CCMP490]
Evalue: 7e-71 | Bitscore: 270
Identities = 140/215 (65%), Positives = 159/215 (73%), Gaps = 20/215 (9%) |
NCBI |
Show Blast
|
| XP_001691031.1 |
light-harvesting protein of photosystem I [Chlamydomonas reinhardtii]
Evalue: 9e-49 | Bitscore: 197
Identities = 99/189 (52%), Positives = 123/189 (65%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| tpg|DAA05912.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca2 [Acetabularia acetabulum]
Evalue: 2e-44 | Bitscore: 182
Identities = 91/165 (55%), Positives = 113/165 (68%), Gaps = 0/165 (0%) |
NCBI |
Show Blast
|
| ABD37881.1 |
light-harvesting chlorophyll-a/b binding protein Lhca4.1 [Mesostigma viride]
Evalue: 9e-40 | Bitscore: 167
Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 21/203 (10%) |
NCBI |
Show Blast
|
| AAY27547.1 |
chloroplast light-harvesting complex I protein precursor Lhca5 [Ostreococcus tauri]
Evalue: 1e-35 | Bitscore: 153
Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 3/154 (1%) |
NCBI |
Show Blast
|
| XP_001417828.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-35 | Bitscore: 152
Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 3/154 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| EAC81111.1 |
unknown [environmental sequence]
Evalue: 0.0003 | Bitscore: 44
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 37/171 (21%) |
GOS |
Show Blast
|
| EAJ62839.1 |
unknown [environmental sequence]
Evalue: 0.0004 | Bitscore: 44
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 35/167 (20%) |
GOS |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| CAL53128.1 |
chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Evalue: 3e-120 | Bitscore: 434
Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) |
NCBI |
Show Blast
|
| XP_001417062.1 |
chlorophyll a/b binding, maybe photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-92 | Bitscore: 341
Identities = 174/214 (81%), Positives = 178/214 (83%), Gaps = 19/214 (8%) |
NCBI |
Show Blast
|
| XP_002507283.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas sp. RCC299]
Evalue: 2e-73 | Bitscore: 278
Identities = 140/214 (65%), Positives = 161/214 (75%), Gaps = 19/214 (8%) |
NCBI |
Show Blast
|
| EEH60670.1 |
chlorophyll a/b-binding protein, chloroplast precursor [Micromonas pusilla CCMP1545]
Evalue: 1e-72 | Bitscore: 276
Identities = 139/191 (72%), Positives = 155/191 (81%), Gaps = 2/191 (1%) |
NCBI |
Show Blast
|
| tpg|DAA05941.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca2 [Micromonas sp. CCMP490]
Evalue: 7e-71 | Bitscore: 270
Identities = 140/215 (65%), Positives = 159/215 (73%), Gaps = 20/215 (9%) |
NCBI |
Show Blast
|
| XP_001691031.1 |
light-harvesting protein of photosystem I [Chlamydomonas reinhardtii]
Evalue: 9e-49 | Bitscore: 197
Identities = 99/189 (52%), Positives = 123/189 (65%), Gaps = 0/189 (0%) |
NCBI |
Show Blast
|
| tpg|DAA05912.1| |
TPA_inf: chloroplast light-harvesting complex I protein precursor Lhca2 [Acetabularia acetabulum]
Evalue: 2e-44 | Bitscore: 182
Identities = 91/165 (55%), Positives = 113/165 (68%), Gaps = 0/165 (0%) |
NCBI |
Show Blast
|
| ABD37881.1 |
light-harvesting chlorophyll-a/b binding protein Lhca4.1 [Mesostigma viride]
Evalue: 9e-40 | Bitscore: 167
Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 21/203 (10%) |
NCBI |
Show Blast
|
| AAY27547.1 |
chloroplast light-harvesting complex I protein precursor Lhca5 [Ostreococcus tauri]
Evalue: 1e-35 | Bitscore: 153
Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 3/154 (1%) |
NCBI |
Show Blast
|
| XP_001417828.1 |
chlorophyll a/b binding, possibly photosystem I light harvesting complex [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-35 | Bitscore: 152
Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 3/154 (1%) |
NCBI |
Show Blast
|
| No hits found against database O.RCC809 with an e-value better than 1e-3. |
| No hits found against database O.luci with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Ot05g03910 |
chrom05.0001 [618438..618442,618725..619298] inframe stop codon
Evalue: 1e-37 | Bitscore: 150
Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 3/154 (1%) |
Self |
Show Blast
|
| Ot09g04370 |
chrom09.0001 [665721..666449]
Evalue: 6e-17 | Bitscore: 82
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 27/178 (15%) |
Self |
Show Blast
|
| Ot02g05720 |
chrom02.0001 [683813..683847,684073..684778] inframe stop codon incomplete
Evalue: 7e-17 | Bitscore: 82
Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 27/181 (14%) |
Self |
Show Blast
|
| Ot14g01370 |
chrom14.0001 [192073..192355,192840..193507]
Evalue: 1e-16 | Bitscore: 81
Identities = 72/209 (34%), Positives = 94/209 (44%), Gaps = 50/209 (23%) |
Self |
Show Blast
|
| Ot11g01060 |
chrom11.0001 [188762..189850]
Evalue: 3e-11 | Bitscore: 63
Identities = 58/177 (32%), Positives = 75/177 (42%), Gaps = 39/177 (22%) |
Self |
Show Blast
|
| Ot01g04850 |
chrom01.0001 [789392..790024,790190..790270,790350..790530,
Evalue: 3e-10 | Bitscore: 60
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 50/179 (27%) |
Self |
Show Blast
|
| Ot18g01370 |
chrom18.0001 [211282..211392,211687..212394]
Evalue: 9e-09 | Bitscore: 55
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 42/199 (21%) |
Self |
Show Blast
|
| Ot02g07190 |
chrom02.0001 [968674..969111] inframe stop codon incomplete
Evalue: 4e-08 | Bitscore: 53
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%) |
Self |
Show Blast
|
| Ot05g01790 |
chrom05.0001 [265123..265982,266047..266056]
Evalue: 0.0001 | Bitscore: 41
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 39/160 (24%) |
Self |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| P13869 |
Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1
Evalue: 1e-17 | Bitscore: 89
Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 28/179 (15%) |
SwissP |
Show Blast
|
| P10708 |
Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
Evalue: 4e-17 | Bitscore: 88
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 28/179 (15%) |
SwissP |
Show Blast
|
| P27521 |
Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
Evalue: 6e-17 | Bitscore: 87
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%) |
SwissP |
Show Blast
|
| P27489 |
Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1
Evalue: 2e-16 | Bitscore: 86
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 34/184 (18%) |
SwissP |
Show Blast
|
| P08976 |
Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1
Evalue: 2e-16 | Bitscore: 85
Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 9/189 (4%) |
SwissP |
Show Blast
|
| P27517 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1
Evalue: 2e-16 | Bitscore: 85
Identities = 68/187 (36%), Positives = 94/187 (50%), Gaps = 39/187 (20%) |
SwissP |
Show Blast
|
| Q9SQL2 |
Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
Evalue: 5e-16 | Bitscore: 84
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 31/181 (17%) |
SwissP |
Show Blast
|
| P22686 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1
Evalue: 5e-15 | Bitscore: 81
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 33/183 (18%) |
SwissP |
Show Blast
|
| P20865 |
Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1
Evalue: 5e-15 | Bitscore: 80
Identities = 70/184 (38%), Positives = 94/184 (51%), Gaps = 34/184 (18%) |
SwissP |
Show Blast
|
| P27523 |
Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1
Evalue: 1e-14 | Bitscore: 79
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 34/184 (18%) |
SwissP |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| AT1G19150.1 |
| Symbols: LHCA2*1, LHCA6 | LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding |
Evalue: 3e-20 | Bitscore: 95
Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 28/179 (15%) |
Tair |
Show Blast
|
| AT1G45474.2 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 6e-20 | Bitscore: 94
Identities = 69/198 (34%), Positives = 96/198 (48%), Gaps = 49/198 (24%) |
Tair |
Show Blast
|
| AT1G45474.1 |
| Symbols: LHCA5 | LHCA5 (Photosystem I light harvesting complex gene 5) | chr1:17181793-17182879 FORWARD
Evalue: 6e-20 | Bitscore: 94
Identities = 69/198 (34%), Positives = 96/198 (48%), Gaps = 49/198 (24%) |
Tair |
Show Blast
|
| AT3G47470.1 |
| Symbols: CAB4, LHCA4 | LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding |
Evalue: 6e-18 | Bitscore: 87
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 30/169 (17%) |
Tair |
Show Blast
|
| AT3G61470.1 |
| Symbols: LHCA2 | LHCA2 (Photosystem I light harvesting complex gene 2); chlorophyll binding | chr3:22756711-22758007
Evalue: 3e-17 | Bitscore: 85
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 28/179 (15%) |
Tair |
Show Blast
|
| AT5G54270.1 |
| Symbols: LHCB3*1, LHCB3 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) | chr5:22055650-22056609 FORWARD
Evalue: 6e-16 | Bitscore: 80
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 34/184 (18%) |
Tair |
Show Blast
|
| AT3G54890.1 |
| Symbols: LHCA1 | LHCA1; chlorophyll binding | chr3:20350684-20351900 REVERSE
Evalue: 4e-14 | Bitscore: 74
Identities = 60/168 (35%), Positives = 81/168 (48%), Gaps = 22/168 (13%) |
Tair |
Show Blast
|
| AT2G34430.1 |
| Symbols: LHCB1.4, LHB1B1 | LHB1B1 (Photosystem II light harvesting complex gene 1.4); chlorophyll binding |
Evalue: 6e-14 | Bitscore: 73
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 31/182 (17%) |
Tair |
Show Blast
|
| AT2G34420.1 |
| Symbols: LHCB1.5, LHB1B2 | LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding |
Evalue: 6e-14 | Bitscore: 73
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 31/173 (17%) |
Tair |
Show Blast
|
| AT1G29920.1 |
| Symbols: AB165, LHCB1.1, CAB2 | CAB2 (Chlorophyll a/b-binding protein 2); chlorophyll binding | chr1:10475073-10475876
Evalue: 1e-13 | Bitscore: 73
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 31/182 (17%) |
Tair |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | OtEST02668 |
Support Model | N |
More Info |
| Comment | EST is not matching the given gene model. EST is mapped on the opposite strand |
| Mapping Location | 722629..723011,866624..866666 |
Strand + |
|
